Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287491 Sequence: fasta or formatted (229aa) NCBI GI: 239749265
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {229aa} PREDICTED: hypothetical protein XP_002342841
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         28           4
 C cysteine            2.2          5           1
 D aspartate           2.2          5           1
 E glutamate           3.9          9           1
 F phenylalanine       2.2          5           1
 G glycine             8.7         20           2
 H histidine           1.3          3           1
 I isoleucine          3.9          9           1
 K lysine              3.5          8           1
 L leucine             6.1         14           1
 M methionine          0.4          1           1
 N asparagine          1.7          4           1
 P proline            14.0         32           6
 Q glutamine           3.1          7           2
 R arginine           11.4         26           3
 S serine              7.0         16           1
 T threonine           4.8         11           1
 V valine              9.6         22           2
 W tryptophan          0.4          1           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100292485          1.000   PREDICTED: hypothetical protein 
LOC100287491          1.000   PREDICTED: hypothetical protein XP_002342841 
LOC100294080          0.829   PREDICTED: similar to RAB19, member RAS oncogene fa...
ZNF840                0.052   PREDICTED: zinc finger protein 840 
ZNF840                0.052   PREDICTED: zinc finger protein 840 
ZNF840                0.052   PREDICTED: zinc finger protein 840 
BRD4                  0.041   bromodomain-containing protein 4 isoform short 
BRD4                  0.041   bromodomain-containing protein 4 isoform long 
RANBP9                0.039   RAN binding protein 9 
JMY                   0.039   junction-mediating and regulatory protein 
UNCX                  0.039   UNC homeobox 
SAMD1                 0.036   sterile alpha motif domain containing 1 
FLJ10357              0.036   hypothetical protein LOC55701 
ARX                   0.034   aristaless related homeobox 
GGN                   0.034   gametogenetin 
BAT2                  0.032   HLA-B associated transcript-2 
FOXL2                 0.032   forkhead box L2 
C6orf132              0.032   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.032   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.032   PREDICTED: hypothetical protein LOC647024 
FMNL2                 0.032   formin-like 2 
MAZ                   0.030   MYC-associated zinc finger protein isoform 2 
MAZ                   0.030   MYC-associated zinc finger protein isoform 1 
MEGF8                 0.030   multiple EGF-like-domains 8 
SETD1B                0.030   SET domain containing 1B 
KIF26A                0.030   kinesin family member 26A 
MEPCE                 0.030   bin3, bicoid-interacting 3 
DTX1                  0.030   deltex homolog 1 
GPRIN1                0.030   G protein-regulated inducer of neurite outgrowth 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press