Guide to the Human Genome
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Name: LOC442142 Sequence: fasta or formatted (134aa) NCBI GI: 239748690
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {134aa} PREDICTED: hypothetical protein
alt mRNA {134aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         15           3
 C cysteine            6.0          8           2
 D aspartate           0.0          0           0
 E glutamate           4.5          6           1
 F phenylalanine       0.7          1           1
 G glycine             6.7          9           1
 H histidine           1.5          2           1
 I isoleucine          0.7          1           1
 K lysine              2.2          3           1
 L leucine             9.7         13           3
 M methionine          1.5          2           1
 N asparagine          0.0          0           0
 P proline            19.4         26           3
 Q glutamine           3.7          5           2
 R arginine            7.5         10           1
 S serine             12.7         17           2
 T threonine           4.5          6           1
 V valine              6.0          8           1
 W tryptophan          0.7          1           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC442142             1.000   PREDICTED: hypothetical protein 
LOC442142             0.988   PREDICTED: hypothetical protein 
SOX30                 0.345   SRY (sex determining region Y)-box 30 isoform b [Homo...
SOX30                 0.345   SRY (sex determining region Y)-box 30 isoform a [Hom...
SEC24C                0.058   SEC24-related protein C 
SEC24C                0.058   SEC24-related protein C 
OTOG                  0.054   PREDICTED: otogelin isoform 1 
OTOG                  0.054   PREDICTED: otogelin isoform 2 
OTOG                  0.054   PREDICTED: otogelin isoform 2 
OTOG                  0.054   PREDICTED: otogelin isoform 1 
OTOG                  0.054   PREDICTED: otogelin isoform 2 
OTOG                  0.054   PREDICTED: otogelin isoform 1 
SNRPN                 0.054   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.054   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.054   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.054   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.054   small nuclear ribonucleoprotein polypeptide N 
SNRPB                 0.054   small nuclear ribonucleoprotein polypeptide B/B' iso...
SNRPB                 0.054   small nuclear ribonucleoprotein polypeptide B/B' isof...
TNKS                  0.054   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
FOXB2                 0.054   forkhead box B2 
KIAA0754              0.047   hypothetical protein LOC643314 
MYPOP                 0.047   Myb protein P42POP 
SRCAP                 0.047   Snf2-related CBP activator protein 
KRBA1                 0.047   KRAB A domain containing 1 
LOC100289949          0.043   PREDICTED: hypothetical protein XP_002346877 
LAMC3                 0.039   laminin, gamma 3 precursor 
FLJ22184              0.039   PREDICTED: hypothetical protein FLJ22184 
WIPF3                 0.039   WAS/WASL interacting protein family, member 3 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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