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Search of human proteins with 239745938
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
(336 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745938 PREDICTED: hypothetical protein [Homo sapiens] 704 0.0
gi|239751430 PREDICTED: hypothetical protein [Homo sapiens] 154 1e-37
gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo ... 154 1e-37
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 58 1e-08
gi|21618325 forkhead box E1 [Homo sapiens] 53 4e-07
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 45 7e-05
gi|115511036 alpha-kinase 3 [Homo sapiens] 45 7e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 45 1e-04
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 45 1e-04
gi|38788260 bromodomain PHD finger transcription factor isoform ... 44 3e-04
gi|38788274 bromodomain PHD finger transcription factor isoform ... 44 3e-04
gi|39812378 RAN binding protein 9 [Homo sapiens] 43 5e-04
gi|169208819 PREDICTED: similar to kinase D-interacting substrat... 42 6e-04
gi|169208593 PREDICTED: similar to kinase D-interacting substrat... 42 6e-04
gi|169208169 PREDICTED: similar to kinase D-interacting substrat... 42 6e-04
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 42 8e-04
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 42 8e-04
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens] 41 0.001
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 41 0.001
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 41 0.002
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens] 41 0.002
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens] 41 0.002
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 41 0.002
gi|33457350 OTU domain containing 5 isoform a [Homo sapiens] 41 0.002
gi|209977021 OTU domain containing 5 isoform b [Homo sapiens] 41 0.002
gi|209977019 OTU domain containing 5 isoform b [Homo sapiens] 41 0.002
gi|169211844 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|109452587 family with sequence similarity 98, member B isofor... 40 0.002
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 40 0.002
>gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 704 bits (1816), Expect = 0.0
Identities = 336/336 (100%), Positives = 336/336 (100%)
Query: 1 MQSPFLTMRLFPLVNLVFCHLMCPRISPLFGGEAGLGGDRSRMHSTRVSKGGGQRRWGRS 60
MQSPFLTMRLFPLVNLVFCHLMCPRISPLFGGEAGLGGDRSRMHSTRVSKGGGQRRWGRS
Sbjct: 1 MQSPFLTMRLFPLVNLVFCHLMCPRISPLFGGEAGLGGDRSRMHSTRVSKGGGQRRWGRS 60
Query: 61 LQQLGWVGTWSAAVGTMAPEAAFCAVTGVVVVFQLLQIIGISLVLLHLMLLVVLRLLGLL 120
LQQLGWVGTWSAAVGTMAPEAAFCAVTGVVVVFQLLQIIGISLVLLHLMLLVVLRLLGLL
Sbjct: 61 LQQLGWVGTWSAAVGTMAPEAAFCAVTGVVVVFQLLQIIGISLVLLHLMLLVVLRLLGLL 120
Query: 121 DVAVLFLLAPVVIVHHFVHGPPGRGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPAT 180
DVAVLFLLAPVVIVHHFVHGPPGRGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPAT
Sbjct: 121 DVAVLFLLAPVVIVHHFVHGPPGRGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPAT 180
Query: 181 AAPPWASSATAWRLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQ 240
AAPPWASSATAWRLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQ
Sbjct: 181 AAPPWASSATAWRLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQ 240
Query: 241 RSAAEAAGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAGGGKRLI 300
RSAAEAAGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAGGGKRLI
Sbjct: 241 RSAAEAAGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAGGGKRLI 300
Query: 301 PNCWGPTQDRLQPPSCFIPLPQRGHVRCATEEPETE 336
PNCWGPTQDRLQPPSCFIPLPQRGHVRCATEEPETE
Sbjct: 301 PNCWGPTQDRLQPPSCFIPLPQRGHVRCATEEPETE 336
>gi|239751430 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 154 bits (389), Expect = 1e-37
Identities = 118/253 (46%), Positives = 138/253 (54%), Gaps = 42/253 (16%)
Query: 69 TWSAAVGTMAPEAAFCAVTGVVVV-FQLLQIIGISLVLLHLMLLVVLRLLGLLDVAVLFL 127
TWSAAVGTMAPEAAF AVTGVVVV F LL+IIG+ +VL HL+LLVVLR+LGLL VAVL L
Sbjct: 8 TWSAAVGTMAPEAAFRAVTGVVVVVFHLLRIIGVIVVLFHLILLVVLRILGLLGVAVLLL 67
Query: 128 L-------------APVVIVHHFVHGPPGRGGPGQVAAAAAAAPAS-SPLPPGR--WCLG 171
L A VVIVHHFV GPPGRGGPGQVAAAA A PAS +P PGR C G
Sbjct: 68 LLLGDHVLLFLLLLALVVIVHHFVDGPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPG 127
Query: 172 DQRRLPPATAAP----PWASSATAWRLPQPRRRRRPTCPCCSRCRELSPPMGPDLG---- 223
R A+ AP WA++A A + +R P + S GP+ G
Sbjct: 128 CCR--GAASGAPRWVRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAGPERGHVSC 185
Query: 224 --GGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGL 281
G +GA A G+ +++ G LG R + R GRGW G
Sbjct: 186 AADEPGTERSGAAAARGSAGASSRGRGALGAWARHSAV-----------RLDSGRGWRGK 234
Query: 282 RGRAGGPRSAEAG 294
AGG +AE G
Sbjct: 235 TPGAGG--AAERG 245
>gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo
sapiens]
Length = 303
Score = 154 bits (389), Expect = 1e-37
Identities = 118/253 (46%), Positives = 138/253 (54%), Gaps = 42/253 (16%)
Query: 69 TWSAAVGTMAPEAAFCAVTGVVVV-FQLLQIIGISLVLLHLMLLVVLRLLGLLDVAVLFL 127
TWSAAVGTMAPEAAF AVTGVVVV F LL+IIG+ +VL HL+LLVVLR+LGLL VAVL L
Sbjct: 8 TWSAAVGTMAPEAAFRAVTGVVVVVFHLLRIIGVIVVLFHLILLVVLRILGLLGVAVLLL 67
Query: 128 L-------------APVVIVHHFVHGPPGRGGPGQVAAAAAAAPAS-SPLPPGR--WCLG 171
L A VVIVHHFV GPPGRGGPGQVAAAA A PAS +P PGR C G
Sbjct: 68 LLLGDHVLLFLLLLALVVIVHHFVDGPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPG 127
Query: 172 DQRRLPPATAAP----PWASSATAWRLPQPRRRRRPTCPCCSRCRELSPPMGPDLG---- 223
R A+ AP WA++A A + +R P + S GP+ G
Sbjct: 128 CCR--GAASGAPRWVRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAGPERGHVSC 185
Query: 224 --GGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGL 281
G +GA A G+ +++ G LG R + R GRGW G
Sbjct: 186 AADEPGTERSGAAAARGSAGASSRGRGALGAWARHSAV-----------RLDSGRGWRGK 234
Query: 282 RGRAGGPRSAEAG 294
AGG +AE G
Sbjct: 235 TPGAGG--AAERG 245
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 58.2 bits (139), Expect = 1e-08
Identities = 50/153 (32%), Positives = 65/153 (42%), Gaps = 21/153 (13%)
Query: 145 GGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPRR---RR 201
G P + A ++PL P G + + A AAP +A R P P R
Sbjct: 90 GPPASIRGGGGGAEKATPLAPKGAAPGAVQPVAGAEAAPAATLAALGGRRPGPPEEPPRE 149
Query: 202 RPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPLMSE 261
+ P S+ E PP+G GGGGGG G GAG G+G + A P+ P
Sbjct: 150 LESVP--SKLGE-PPPLGE--GGGGGGEGGGAGGGSGEREGGA---------PQPP---- 191
Query: 262 PRTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAG 294
P G +GK R RG G G + P S+ AG
Sbjct: 192 PPRGWRGKGVRAQQRGGSGGEGASPSPSSSSAG 224
Score = 33.9 bits (76), Expect = 0.21
Identities = 54/193 (27%), Positives = 70/193 (36%), Gaps = 37/193 (19%)
Query: 141 PPGRGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPA-------------TAAPPWAS 187
P G P AA+ AAA + L P QR PA T +P A
Sbjct: 5 PIGGAAPATAAASPAAAATEARLHPEGSSRKQQRAQSPARPRDSSLRQTIAATRSPVGAG 64
Query: 188 SA-TAWRLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGA---------GAGAGAG- 236
+ + R Q +++++ SR PP + GGGGGA GA GA
Sbjct: 65 TKLNSVRQQQLQQQQQQGNKTGSRT---GPPAS--IRGGGGGAEKATPLAPKGAAPGAVQ 119
Query: 237 --AGAQRSAAEAAGCLGCLPRLPLMSEPRTGEKGKRRRRD------GRGWGGLRGRAGGP 288
AGA+ + A LG P PR E + + G G GG G AGG
Sbjct: 120 PVAGAEAAPAATLAALGGRRPGPPEEPPRELESVPSKLGEPPPLGEGGGGGGEGGGAGGG 179
Query: 289 RSAEAGGGKRLIP 301
GG + P
Sbjct: 180 SGEREGGAPQPPP 192
>gi|21618325 forkhead box E1 [Homo sapiens]
Length = 373
Score = 52.8 bits (125), Expect = 4e-07
Identities = 54/165 (32%), Positives = 63/165 (38%), Gaps = 17/165 (10%)
Query: 137 FVHGPPGRGGPGQVAAAAAA-----APASSPLPPGRWCLGDQRRLPPATAAPPWASSATA 191
++H AAAAAA PA+ P PG G PP+ AAPP A
Sbjct: 160 YMHDAAAAAAAAAAAAAAAAIFPGAVPAARPPYPGAVYAG---YAPPSLAAPPPVYYPAA 216
Query: 192 WRLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLG 251
P P P LSP +GP G GG A A AGA A + + AGC G
Sbjct: 217 SPGPCRVFGLVPERP-------LSPELGPAPSGPGGSC-AFASAGAPATTTGYQPAGCTG 268
Query: 252 CLPRLP-LMSEPRTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAGG 295
P P + G G + G GR GP S AGG
Sbjct: 269 ARPANPSAYAAAYAGPDGAYPQGAGSAIFAAAGRLAGPASPPAGG 313
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 45.4 bits (106), Expect = 7e-05
Identities = 47/148 (31%), Positives = 57/148 (38%), Gaps = 13/148 (8%)
Query: 144 RGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRL-PPATAAP-------PWASSATAWRLP 195
RG G+ + AA P P P + D+ PPA A P P A++ATA P
Sbjct: 985 RGAAGRPLSPPAAQPPQKPPPSYFAIVRDKEPAEPPAGAFPGFPSPPAPPAAAATAVGPP 1044
Query: 196 QPRRR-RRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLP 254
R + P +R P P LG G GGAG GAG GA A C P
Sbjct: 1045 LCRLAFEDESPPAPARWPRSDPESQPLLGPGAGGAGGTGGAGGGA---PAAPPPCRAAPP 1101
Query: 255 RLPLMS-EPRTGEKGKRRRRDGRGWGGL 281
P + EP + G GGL
Sbjct: 1102 PCPYLDLEPSPSDSEDSESLGGASLGGL 1129
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 45.4 bits (106), Expect = 7e-05
Identities = 54/163 (33%), Positives = 62/163 (38%), Gaps = 33/163 (20%)
Query: 142 PGRGGPGQVAAAAAAAPASSPLPPG-----RWCLGDQRRLPPATAAPPWASSATAWRLPQ 196
PG G V A P PPG R+C R+ A P A W P
Sbjct: 77 PGSSTKGPVLHDQDTRCAFLPRPPGPLQTRRYCRHQGRQGSGLGAGP----GAGTWA-PA 131
Query: 197 PRRRRRPTCPCCSRCRE----LSPPMGPDLGGGG-----GGAGAGAGAGAGAQRSAAEAA 247
P +P CP +R E ++ P + G G A AG G GAGA R+ EAA
Sbjct: 132 PPGVSKPRCPGRARPGEGQQQVTTARPPAINRGARQPRAGAAAAGRGPGAGAWRT-GEAA 190
Query: 248 GCLGCLPRLPLMSEPRTGEKGK--RRRRDGRGWG-GLRGRAGG 287
G P GE G RR RGWG G R AGG
Sbjct: 191 ASAG----------PAVGEGGAMGSRRAPSRGWGAGGRSGAGG 223
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 44.7 bits (104), Expect = 1e-04
Identities = 54/198 (27%), Positives = 70/198 (35%), Gaps = 39/198 (19%)
Query: 140 GPPGRGG-PGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWAS----------S 188
G PG G PG+ + A+ P P G PP A PP S S
Sbjct: 974 GLPGPSGEPGKQGPSGASGERGPPGPMG----------PPGLAGPPGESGREGAPGAEGS 1023
Query: 189 ATAWRLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAG 248
P + R T P PP P G G G +G + A AG
Sbjct: 1024 PGRDGSPGAKGDRGETGPA-------GPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAG 1076
Query: 249 CLGCL-------PRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAGGGKRLIP 301
+G + P+ P + TGE+G R + RG+ GL+G G P S G++
Sbjct: 1077 PVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSP----GEQGPS 1132
Query: 302 NCWGPTQDRLQPPSCFIP 319
GP R P S P
Sbjct: 1133 GASGPAGPRGPPGSAGAP 1150
Score = 40.0 bits (92), Expect = 0.003
Identities = 52/182 (28%), Positives = 61/182 (33%), Gaps = 33/182 (18%)
Query: 140 GPPGRGGP-------GQVAAAAAAAPASSPLPPGRWCL-GDQRRL----PPATAAPPWAS 187
GPPG GP G V A A S PPG G R+ P A PP
Sbjct: 839 GPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP 898
Query: 188 SATAWRLPQ-PRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEA 246
+ PR P R E+ PP P G G GA AGA
Sbjct: 899 GPAGKEGGKGPRGETGPA----GRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGI 954
Query: 247 AGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAG--GPRSAEAGGGKRLIPNCW 304
AG + G G +R RG+ GL G +G G + G+R P
Sbjct: 955 AG--------------QRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPM 1000
Query: 305 GP 306
GP
Sbjct: 1001 GP 1002
Score = 37.0 bits (84), Expect = 0.025
Identities = 49/167 (29%), Positives = 56/167 (33%), Gaps = 32/167 (19%)
Query: 140 GPPG-RGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPR 198
GP G RG PG A AA PA +P G Q A AP A +
Sbjct: 365 GPQGVRGEPGPPGPAGAAGPAGNPGADG------QPGAKGANGAPGIAGA---------- 408
Query: 199 RRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPL 258
P R S P GP GG G G GA + A G G P+
Sbjct: 409 -------PGFPGARGPSGPQGP--GGPPGPKGNSGEPGAPGSKGDTGAKGEPG-----PV 454
Query: 259 MSEPRTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAGGGKRLIPNCWG 305
+ G G+ +R RG G G GP G G R P G
Sbjct: 455 GVQGPPGPAGEEGKRGARGEPGPTG-LPGPPGERGGPGSRGFPGADG 500
Score = 35.8 bits (81), Expect = 0.056
Identities = 54/184 (29%), Positives = 63/184 (34%), Gaps = 31/184 (16%)
Query: 140 GPPGRGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLP--PATAAPPWASSATAWR---- 193
GPPG PG+ A+ P P PPG+ + P P PP A
Sbjct: 203 GPPGE--PGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAG 260
Query: 194 LPQPRRRRR---------PTCPCCSRCRELSP-------PMGP-DLGGGGGGAGAGAGAG 236
LP + R P + SP MGP L G G GA AG
Sbjct: 261 LPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAG 320
Query: 237 AGAQRSAAEAAGCLGCL-----PRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAGGPRSA 291
A A AAG G P P + GE G + R G G+RG G P A
Sbjct: 321 ARGNDGATGAAGPPGPTGPAGPPGFPGAVGAK-GEAGPQGPRGSEGPQGVRGEPGPPGPA 379
Query: 292 EAGG 295
A G
Sbjct: 380 GAAG 383
Score = 33.5 bits (75), Expect = 0.28
Identities = 52/174 (29%), Positives = 59/174 (33%), Gaps = 21/174 (12%)
Query: 140 GPPGRGGPGQVAAAAAAAPAS---SPLPPG-RWCLGDQRRLPPATAAPPWASSATAWR-L 194
GP RG PG A PA SP P G + G+ R P A P A T
Sbjct: 489 GPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGR--PGEAGLPGAKGLTGSPGS 546
Query: 195 PQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGAG-AGAGAGAGAQRSAAE-------- 245
P P + P P R PP P G G G G AG A E
Sbjct: 547 PGPDGKTGPPGPAGQDGRP-GPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPG 605
Query: 246 AAGCLGCLPRLPLMSEPR----TGEKGKRRRRDGRGWGGLRGRAGGPRSAEAGG 295
A G G P GE+G++ G+ GL G AG P A G
Sbjct: 606 AVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPG 659
Score = 33.1 bits (74), Expect = 0.36
Identities = 47/184 (25%), Positives = 58/184 (31%), Gaps = 24/184 (13%)
Query: 140 GPPGRGG-PGQVAAAAAAAPASSPLPPG-------RWCLGDQRRLPPATAAPPWASSATA 191
GPPGR G PGQ P P PPG + G + + P +
Sbjct: 127 GPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGP 186
Query: 192 WRLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLG 251
LP P P P + PP P G G G G + AG G
Sbjct: 187 RGLPGP-----PGAPGPQGFQ--GPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPG 239
Query: 252 CL----PRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAG-----GPRSAEAGGGKRLIPN 302
P P + G G + RG+ GL G G GP+ G+ P
Sbjct: 240 RPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPG 299
Query: 303 CWGP 306
GP
Sbjct: 300 QMGP 303
Score = 32.7 bits (73), Expect = 0.47
Identities = 50/184 (27%), Positives = 62/184 (33%), Gaps = 30/184 (16%)
Query: 138 VHGPPGRGGP-GQVAAAAAAAPASSPLPPGRWCLGDQ--------RRLPPATAAPPWASS 188
V GPPG GP G+ A A P P G G+Q + LP P A
Sbjct: 600 VPGPPGAVGPAGKDGEAGAQGPPGPAGPAGE--RGEQGPAGSPGFQGLPGPAGPPGEAGK 657
Query: 189 ATAWRLPQPRRRRRPTCPCCSRC----RELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAA 244
+P P+ R R + P GP G G GA GA A
Sbjct: 658 PGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGP--AGPRGANGAPGNDGAKGDAGAP 715
Query: 245 EAAGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAG--GPRSAEAGGGKRLIPN 302
A G S+ G +G R G G +G G GP+ A+ GK +
Sbjct: 716 GAPG-----------SQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRG 764
Query: 303 CWGP 306
GP
Sbjct: 765 LTGP 768
Score = 31.2 bits (69), Expect = 1.4
Identities = 47/173 (27%), Positives = 56/173 (32%), Gaps = 27/173 (15%)
Query: 140 GPPG-RGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPR 198
GP G RG PG PA PPG D + P A P A + P P
Sbjct: 791 GPTGARGAPGDRGEPGPPGPAGFAGPPG----ADGQ--PGAKGEPGDAGAKGDAGPPGPA 844
Query: 199 RRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPL 258
P P + G G GA AG AAG +G P P
Sbjct: 845 GPAGPPGPIGN-------------VGAPGAKGARGSAGPPGATGFPGAAGRVG--PPGPS 889
Query: 259 MSEPRTGEKGKRRRRDGRGWGGLRGRAG-----GPRSAEAGGGKRLIPNCWGP 306
+ G G + G+G G G AG GP G++ P GP
Sbjct: 890 GNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGP 942
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 44.7 bits (104), Expect = 1e-04
Identities = 56/177 (31%), Positives = 68/177 (38%), Gaps = 21/177 (11%)
Query: 138 VHGPPGRGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSA-----TAW 192
V PG P + A+A +A S +P G G RLP + +++ +A
Sbjct: 83 VSSGPGAAPPAEFRASARSAQGSRDVPAGP---GFPPRLPRPFTSASFSNQTRLRRRSAS 139
Query: 193 RLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAG----AGAGAGAQRSAAEAA- 247
LP PR + P CS P G GG A A AG G RSA A
Sbjct: 140 ALPAPRLCPQRASPGCSSPGVRGPGGGASPRARGGNAAAALAARQAAGGGRSRSAFVAGR 199
Query: 248 -GCLGC--LPRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAGGGKRLIP 301
L C LPR P + R G RRR G G R GP A A G + L P
Sbjct: 200 DAALACAQLPRRPRGAGARRG----MRRRLGAG-ERPAPRPRGPPRAPARGARWLRP 251
Score = 32.3 bits (72), Expect = 0.61
Identities = 24/79 (30%), Positives = 28/79 (35%), Gaps = 19/79 (24%)
Query: 178 PATAAPPWASSATAWRLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGA---- 233
P+ P + R+PQP R P GP GGGGG AG G
Sbjct: 10 PSLCTPRVQCIRGSQRVPQPPAARSPR--------------GPRAGGGGGDAGGGGAPVR 55
Query: 234 -GAGAGAQRSAAEAAGCLG 251
G G A + A C G
Sbjct: 56 RARGGGCWARAYQDARCFG 74
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 44.7 bits (104), Expect = 1e-04
Identities = 56/177 (31%), Positives = 68/177 (38%), Gaps = 21/177 (11%)
Query: 138 VHGPPGRGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSA-----TAW 192
V PG P + A+A +A S +P G G RLP + +++ +A
Sbjct: 83 VSSGPGAAPPAEFRASARSAQGSRDVPAGP---GFPPRLPRPFTSASFSNQTRLRRRSAS 139
Query: 193 RLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAG----AGAGAGAQRSAAEAA- 247
LP PR + P CS P G GG A A AG G RSA A
Sbjct: 140 ALPAPRLCPQRASPGCSSPGVRGPGGGASPRARGGNAAAALAARQAAGGGRSRSAFVAGR 199
Query: 248 -GCLGC--LPRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAGGGKRLIP 301
L C LPR P + R G RRR G G R GP A A G + L P
Sbjct: 200 DAALACAQLPRRPRGAGARRG----MRRRLGAG-ERPAPRPRGPPRAPARGARWLRP 251
Score = 32.3 bits (72), Expect = 0.61
Identities = 24/79 (30%), Positives = 28/79 (35%), Gaps = 19/79 (24%)
Query: 178 PATAAPPWASSATAWRLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGA---- 233
P+ P + R+PQP R P GP GGGGG AG G
Sbjct: 10 PSLCTPRVQCIRGSQRVPQPPAARSPR--------------GPRAGGGGGDAGGGGAPVR 55
Query: 234 -GAGAGAQRSAAEAAGCLG 251
G G A + A C G
Sbjct: 56 RARGGGCWARAYQDARCFG 74
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 43.5 bits (101), Expect = 3e-04
Identities = 40/117 (34%), Positives = 51/117 (43%), Gaps = 14/117 (11%)
Query: 144 RGGPGQVAAAAAA-----APASSPLPPGRWCLGDQRRLPPATAAPPWASS----ATAWRL 194
RG P + AA AA AP P PP +G R ++ WA++ A RL
Sbjct: 5 RGRPPKQPAAPAAERCAPAPPPPPPPPTSGPIGGLRSRHRGSSRGRWAAAQAEVAPKTRL 64
Query: 195 PQPR----RRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAA 247
PR RR+P P + +P G GGGGG G G G G A+ +AA A
Sbjct: 65 SSPRGGSSSRRKPPPPPPAPPSTSAPGRG-GRGGGGGRTGGGGGGGHLARTTAARRA 120
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 43.5 bits (101), Expect = 3e-04
Identities = 40/117 (34%), Positives = 51/117 (43%), Gaps = 14/117 (11%)
Query: 144 RGGPGQVAAAAAA-----APASSPLPPGRWCLGDQRRLPPATAAPPWASS----ATAWRL 194
RG P + AA AA AP P PP +G R ++ WA++ A RL
Sbjct: 5 RGRPPKQPAAPAAERCAPAPPPPPPPPTSGPIGGLRSRHRGSSRGRWAAAQAEVAPKTRL 64
Query: 195 PQPR----RRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAA 247
PR RR+P P + +P G GGGGG G G G G A+ +AA A
Sbjct: 65 SSPRGGSSSRRKPPPPPPAPPSTSAPGRG-GRGGGGGRTGGGGGGGHLARTTAARRA 120
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 42.7 bits (99), Expect = 5e-04
Identities = 37/105 (35%), Positives = 39/105 (37%), Gaps = 23/105 (21%)
Query: 140 GPPGRGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPRR 199
G PG G G+ AAAAA P PP PPATAAPP P P
Sbjct: 49 GSPGGGAGGEGLGAAAAALLLHPPPPP----------PPATAAPP----------PPP-- 86
Query: 200 RRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAA 244
P P + PP P L G G AG A SAA
Sbjct: 87 -PPPPPPASAAAPASGPPAPPGLAAGPGPAGGAPTPALVAGSSAA 130
>gi|169208819 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 42.4 bits (98), Expect = 6e-04
Identities = 48/150 (32%), Positives = 58/150 (38%), Gaps = 35/150 (23%)
Query: 146 GP-GQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPRRRRRPT 204
GP G+ AAAAAA ++S PPGR PA AA P R P PRR RP
Sbjct: 175 GPWGRAAAAAAARGSNSDSPPGR----------PAPAASP------EHRRPSPRRLPRPL 218
Query: 205 CPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPLMSEPRT 264
+R GG GG AG +G R+ LG L L + T
Sbjct: 219 LARFARA-----------AGGHGGEAGSAGKNSGRHRAQGSERPELGRSMSLALGAV--T 265
Query: 265 GEKGKRRRRDGRGWGGLRGRAGGPRSAEAG 294
E+ R R G L P+S+ G
Sbjct: 266 EEEAARLRA-----GALMALPNSPQSSGTG 290
>gi|169208593 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 42.4 bits (98), Expect = 6e-04
Identities = 48/150 (32%), Positives = 58/150 (38%), Gaps = 35/150 (23%)
Query: 146 GP-GQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPRRRRRPT 204
GP G+ AAAAAA ++S PPGR PA AA P R P PRR RP
Sbjct: 175 GPWGRAAAAAAARGSNSDSPPGR----------PAPAASP------EHRRPSPRRLPRPL 218
Query: 205 CPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPLMSEPRT 264
+R GG GG AG +G R+ LG L L + T
Sbjct: 219 LARFARA-----------AGGHGGEAGSAGKNSGRHRAQGSERPELGRSMSLALGAV--T 265
Query: 265 GEKGKRRRRDGRGWGGLRGRAGGPRSAEAG 294
E+ R R G L P+S+ G
Sbjct: 266 EEEAARLRA-----GALMALPNSPQSSGTG 290
>gi|169208169 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 42.4 bits (98), Expect = 6e-04
Identities = 48/150 (32%), Positives = 58/150 (38%), Gaps = 35/150 (23%)
Query: 146 GP-GQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPRRRRRPT 204
GP G+ AAAAAA ++S PPGR PA AA P R P PRR RP
Sbjct: 175 GPWGRAAAAAAARGSNSDSPPGR----------PAPAASP------EHRRPSPRRLPRPL 218
Query: 205 CPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPLMSEPRT 264
+R GG GG AG +G R+ LG L L + T
Sbjct: 219 LARFARA-----------AGGHGGEAGSAGKNSGRHRAQGSERPELGRSMSLALGAV--T 265
Query: 265 GEKGKRRRRDGRGWGGLRGRAGGPRSAEAG 294
E+ R R G L P+S+ G
Sbjct: 266 EEEAARLRA-----GALMALPNSPQSSGTG 290
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 42.0 bits (97), Expect = 8e-04
Identities = 52/171 (30%), Positives = 68/171 (39%), Gaps = 19/171 (11%)
Query: 149 QVAAAAAAAPASSPLPPG---RWCLGDQRRLPPATAAPPWASSATAWRLPQPRRRRRPTC 205
QVA AAA++ + P PP + QR AA A+ + + P
Sbjct: 4 QVAPAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAV 63
Query: 206 -PCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPLMSEPRT 264
P +EL G + GGGGG GAG+G G GA+ + G G PR P ++ T
Sbjct: 64 GPPQPLGKELQD--GAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAG--PR-PALNNNLT 118
Query: 265 GEKGKRRRRDGRGWGGLRGRAGGPRSAEAGGGKRLIPNCWGPTQDRLQPPS 315
G G G G G P SA A L P +G Q + PS
Sbjct: 119 EPPG------GGGGGSSDGVGAPPHSAAAA----LPPPAYGFGQPYGRSPS 159
Score = 32.3 bits (72), Expect = 0.61
Identities = 54/195 (27%), Positives = 66/195 (33%), Gaps = 24/195 (12%)
Query: 142 PGRGGPGQVAAAAAAAP----ASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQP 197
P G PG AAAAA + +S+ QR P A T P
Sbjct: 234 PRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATP 293
Query: 198 RRRRRPTCPCCSRCRELSP----PMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCL 253
+ T P +R + P GP GG G G A GA +AA AA G
Sbjct: 294 TLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGA 353
Query: 254 PRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAGGGKRLIPNCWGPTQDRLQ- 312
+ + G G G G R P S GK + P +G T Q
Sbjct: 354 QQRSHHAPMSPGSSG--------GGGQPLARTPQPSSPMDQMGK-MRPQPYGGTNPYSQQ 404
Query: 313 --PPSCFIPLPQRGH 325
PPS PQ+GH
Sbjct: 405 QGPPSG----PQQGH 415
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 42.0 bits (97), Expect = 8e-04
Identities = 52/171 (30%), Positives = 68/171 (39%), Gaps = 19/171 (11%)
Query: 149 QVAAAAAAAPASSPLPPG---RWCLGDQRRLPPATAAPPWASSATAWRLPQPRRRRRPTC 205
QVA AAA++ + P PP + QR AA A+ + + P
Sbjct: 4 QVAPAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAV 63
Query: 206 -PCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPLMSEPRT 264
P +EL G + GGGGG GAG+G G GA+ + G G PR P ++ T
Sbjct: 64 GPPQPLGKELQD--GAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAG--PR-PALNNNLT 118
Query: 265 GEKGKRRRRDGRGWGGLRGRAGGPRSAEAGGGKRLIPNCWGPTQDRLQPPS 315
G G G G G P SA A L P +G Q + PS
Sbjct: 119 EPPG------GGGGGSSDGVGAPPHSAAAA----LPPPAYGFGQPYGRSPS 159
Score = 32.3 bits (72), Expect = 0.61
Identities = 54/195 (27%), Positives = 66/195 (33%), Gaps = 24/195 (12%)
Query: 142 PGRGGPGQVAAAAAAAP----ASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQP 197
P G PG AAAAA + +S+ QR P A T P
Sbjct: 234 PRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATP 293
Query: 198 RRRRRPTCPCCSRCRELSP----PMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCL 253
+ T P +R + P GP GG G G A GA +AA AA G
Sbjct: 294 TLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGA 353
Query: 254 PRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAGGGKRLIPNCWGPTQDRLQ- 312
+ + G G G G R P S GK + P +G T Q
Sbjct: 354 QQRSHHAPMSPGSSG--------GGGQPLARTPQPSSPMDQMGK-MRPQPYGGTNPYSQQ 404
Query: 313 --PPSCFIPLPQRGH 325
PPS PQ+GH
Sbjct: 405 QGPPSG----PQQGH 415
>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]
Length = 326
Score = 41.2 bits (95), Expect = 0.001
Identities = 32/86 (37%), Positives = 40/86 (46%), Gaps = 20/86 (23%)
Query: 141 PPGRGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPRRR 200
PPG GP ++++ +P+SSP PPG D P A +A P P R
Sbjct: 200 PPGLAGPS--LSSSSFSPSSSPPPPG-----DLPLSPSAFSAAPGT----------PLAR 242
Query: 201 RRPTCPCCSRCRELSP--PMGPDLGG 224
R PT CC CR +P GP LGG
Sbjct: 243 RDPTPVCCPSCRRATPISVWGP-LGG 267
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 41.2 bits (95), Expect = 0.001
Identities = 35/115 (30%), Positives = 39/115 (33%), Gaps = 16/115 (13%)
Query: 147 PGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPRRRRRPTCP 206
PG A AAAA +S A AA ASSA A P +C
Sbjct: 341 PGLYQAPAAAAGLNSAASAAA----------AAAAAAAAASSAAAAGAPPSGGSAPCSCL 390
Query: 207 CCSRCRELSPPMGP------DLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPR 255
C + + GGGGGG G G G G GA GC PR
Sbjct: 391 SCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAGGGSDFGCSAAAPR 445
Score = 36.6 bits (83), Expect = 0.033
Identities = 46/160 (28%), Positives = 52/160 (32%), Gaps = 30/160 (18%)
Query: 150 VAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSA----TAWRLPQPRRRRRPTC 205
V AAAAAA AS A A+ P+A+S T L P R C
Sbjct: 292 VTAAAAAAAASGAA---------------AAASSPFATSIRPLDTFRALSHPYSRPELLC 336
Query: 206 PCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAA---------GCLGCLPRL 256
+P L A A A A A A +AA A CL C
Sbjct: 337 SFRHPGLYQAPAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQ 396
Query: 257 PLMSEPRTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAGGG 296
+ R G G GG G GG A AGGG
Sbjct: 397 SAAAAAAAAAAALGSRGGGGGGGG--GGGGGGGGAGAGGG 434
Score = 35.8 bits (81), Expect = 0.056
Identities = 36/106 (33%), Positives = 39/106 (36%), Gaps = 17/106 (16%)
Query: 151 AAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLP--QPRRRRRPTCPCC 208
AAAAAAA ASS G APP SA L +
Sbjct: 362 AAAAAAAAASSAAAAG---------------APPSGGSAPCSCLSCHSSQSAAAAAAAAA 406
Query: 209 SRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLP 254
+ G GGGGGG GAGAG G+ SAA G LP
Sbjct: 407 AALGSRGGGGGGGGGGGGGGGGAGAGGGSDFGCSAAAPRSESGFLP 452
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 40.8 bits (94), Expect = 0.002
Identities = 52/166 (31%), Positives = 65/166 (39%), Gaps = 30/166 (18%)
Query: 143 GRGGPGQVAAAAAA------APASSPLPPGRWCLGD-----QRRLPPATAAPPWASSATA 191
G GG G+ AAAAAA A A++ LP G D + R P A+A+ A+SA+A
Sbjct: 222 GGGGGGKAAAAAAASFAAEQAGAAALLPLG--AAADHHSLYKARTPSASASASSAASASA 279
Query: 192 WRLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRS------AAE 245
L P + E GG G + G GAGA S E
Sbjct: 280 -ALAAPGK----------HLAEKKVKRVYLFGGLGTSSSPVGGVGAGADPSDPLGLYEEE 328
Query: 246 AAGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAGGPRSA 291
AGC P L S + R D RG+ LR + P SA
Sbjct: 329 GAGCSPDAPSLSGRSSAASSPAAGRSPADHRGYASLRAASPAPSSA 374
Score = 29.6 bits (65), Expect = 4.0
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 221 DLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGG 280
D GG GG G G G G G+ + G G S+P + + G G G
Sbjct: 156 DKVGGSGGGGHGGGGGGGSSNAGGGGGGASGG----GANSKPAQKKSCGSKVAGGAGGGV 211
Query: 281 LRGRAGGPRSAEAGGGK 297
+ A + GGGK
Sbjct: 212 SKPHAKLILAGGGGGGK 228
Score = 29.3 bits (64), Expect = 5.2
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 222 LGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLP 254
L GGGGG G A A A AAE AG LP
Sbjct: 220 LAGGGGG---GKAAAAAAASFAAEQAGAAALLP 249
>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
Length = 920
Score = 40.8 bits (94), Expect = 0.002
Identities = 29/88 (32%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 176 LPPATAAPPWASSATAWRLPQPRRRRRPTCPCCSRCRELSPPMG-------PDLGGGGGG 228
+P + PP A A A + P S LSPP+ P GGGGGG
Sbjct: 698 IPDSVLTPPGADGAAARKTQFGASATAALAPVASD--PLSPPLSASPRDKHPGNGGGGGG 755
Query: 229 AGAGAGAGAGAQRSAAEAAGCLGCLPRL 256
G GAG G + ++ G L L RL
Sbjct: 756 GGGGAGGGGPSASNSLLYTGDLEALQRL 783
Score = 36.2 bits (82), Expect = 0.043
Identities = 43/154 (27%), Positives = 52/154 (33%), Gaps = 22/154 (14%)
Query: 187 SSATAWRLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEA 246
+ ++ W P R R P S + S P GGGGG G G G S
Sbjct: 647 NDSSIWNYPPNREISRNESPY-SMTKPPSSEHFPSPQGGGGGGGGGGGLHVAIPDSVLTP 705
Query: 247 AGCLGCLPR------------LPLMSEPRTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAG 294
G G R P+ S+P + R G GG G GG AG
Sbjct: 706 PGADGAAARKTQFGASATAALAPVASDPLSPPLSASPRDKHPGNGGGGGGGGG----GAG 761
Query: 295 GGKRLIPNCWGPTQD-----RLQPPSCFIPLPQR 323
GG N T D RLQ + +PL R
Sbjct: 762 GGGPSASNSLLYTGDLEALQRLQAGNVVLPLVHR 795
>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
Length = 901
Score = 40.8 bits (94), Expect = 0.002
Identities = 29/88 (32%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 176 LPPATAAPPWASSATAWRLPQPRRRRRPTCPCCSRCRELSPPMG-------PDLGGGGGG 228
+P + PP A A A + P S LSPP+ P GGGGGG
Sbjct: 679 IPDSVLTPPGADGAAARKTQFGASATAALAPVASD--PLSPPLSASPRDKHPGNGGGGGG 736
Query: 229 AGAGAGAGAGAQRSAAEAAGCLGCLPRL 256
G GAG G + ++ G L L RL
Sbjct: 737 GGGGAGGGGPSASNSLLYTGDLEALQRL 764
Score = 36.2 bits (82), Expect = 0.043
Identities = 43/154 (27%), Positives = 52/154 (33%), Gaps = 22/154 (14%)
Query: 187 SSATAWRLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEA 246
+ ++ W P R R P S + S P GGGGG G G G S
Sbjct: 628 NDSSIWNYPPNREISRNESPY-SMTKPPSSEHFPSPQGGGGGGGGGGGLHVAIPDSVLTP 686
Query: 247 AGCLGCLPR------------LPLMSEPRTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAG 294
G G R P+ S+P + R G GG G GG AG
Sbjct: 687 PGADGAAARKTQFGASATAALAPVASDPLSPPLSASPRDKHPGNGGGGGGGGG----GAG 742
Query: 295 GGKRLIPNCWGPTQD-----RLQPPSCFIPLPQR 323
GG N T D RLQ + +PL R
Sbjct: 743 GGGPSASNSLLYTGDLEALQRLQAGNVVLPLVHR 776
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 40.8 bits (94), Expect = 0.002
Identities = 48/169 (28%), Positives = 56/169 (33%), Gaps = 33/169 (19%)
Query: 141 PPGRGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPRRR 200
P GG GQ + A P S+ PP + R A AA P P R +
Sbjct: 311 PQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAP---------TPPARGK 361
Query: 201 RRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQ------RSAAEAAGCLGCLP 254
P SP P G GG A GAG + RS+A A G
Sbjct: 362 ESP-----------SPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRG--R 408
Query: 255 RLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAG-----GPRSAEAGGGKR 298
R P + PR + R R G RG G G G GKR
Sbjct: 409 RRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKR 457
Score = 36.6 bits (83), Expect = 0.033
Identities = 49/212 (23%), Positives = 70/212 (33%), Gaps = 39/212 (18%)
Query: 139 HGPPGRGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPR 198
H PP + AA A++P PP R R P++ ++ A R + R
Sbjct: 332 HSPPDKPSSPSPRVRDKAA-AAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRR 390
Query: 199 RRRRPTCPCCSRCREL-------SPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLG 251
RRRR + S R +PP G + + +G+G GA E
Sbjct: 391 RRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPG---- 446
Query: 252 CLPRLPLMSEPRTGEKGKR-RRRDGRGWG-------GLRGRAGGPRSAEAGGGKRLIPNC 303
SE G GKR + R R G GR GGP + P
Sbjct: 447 --------SERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRS 498
Query: 304 WGPTQDRLQPPSCFIPLPQRGHVRCATEEPET 335
W ++ P + R A + P +
Sbjct: 499 WSSSRS-----------PSKSRSRSAEKRPHS 519
>gi|33457350 OTU domain containing 5 isoform a [Homo sapiens]
Length = 571
Score = 40.8 bits (94), Expect = 0.002
Identities = 44/154 (28%), Positives = 56/154 (36%), Gaps = 25/154 (16%)
Query: 143 GRGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPRRRRR 202
G G + + A P +SP P G LP PP A A +P
Sbjct: 46 GGGDRDRDSGVVGARPRASPPPQGP--------LP----GPPGALHRWALAVP------- 86
Query: 203 PTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPLMSEP 262
P R ++ SPP GG GGG G GA A +A G G + +
Sbjct: 87 PGAVAGPRPQQASPPPCGGPGGPGGGPGDALGAAAAGVGAAGVVVGVGGAVG----VGGC 142
Query: 263 RTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAGGG 296
+G +RRR G G + G G P E G G
Sbjct: 143 CSGPGHSKRRRQAPGVGAVGG--GSPEREEVGAG 174
Score = 33.9 bits (76), Expect = 0.21
Identities = 34/114 (29%), Positives = 40/114 (35%), Gaps = 20/114 (17%)
Query: 200 RRRPTCPCCSRCRELSPP----MGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPR 255
+++P P E PP P GGG G G G G G G +G +G PR
Sbjct: 6 KKKPPPPDADPANEPPPPGPMPPAPRRGGGVGVGGGGTGVGGG---DRDRDSGVVGARPR 62
Query: 256 L-PLMSEPRTGEKGKRRRRDGRGWGGL--RGRAGGPRSAEAGGGKRLIPNCWGP 306
P P G G R W G GPR +A P C GP
Sbjct: 63 ASPPPQGPLPGPPGALHR-----WALAVPPGAVAGPRPQQASP-----PPCGGP 106
>gi|209977021 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 40.8 bits (94), Expect = 0.002
Identities = 44/154 (28%), Positives = 56/154 (36%), Gaps = 25/154 (16%)
Query: 143 GRGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPRRRRR 202
G G + + A P +SP P G LP PP A A +P
Sbjct: 46 GGGDRDRDSGVVGARPRASPPPQGP--------LP----GPPGALHRWALAVP------- 86
Query: 203 PTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPLMSEP 262
P R ++ SPP GG GGG G GA A +A G G + +
Sbjct: 87 PGAVAGPRPQQASPPPCGGPGGPGGGPGDALGAAAAGVGAAGVVVGVGGAVG----VGGC 142
Query: 263 RTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAGGG 296
+G +RRR G G + G G P E G G
Sbjct: 143 CSGPGHSKRRRQAPGVGAVGG--GSPEREEVGAG 174
Score = 33.9 bits (76), Expect = 0.21
Identities = 34/114 (29%), Positives = 40/114 (35%), Gaps = 20/114 (17%)
Query: 200 RRRPTCPCCSRCRELSPP----MGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPR 255
+++P P E PP P GGG G G G G G G +G +G PR
Sbjct: 6 KKKPPPPDADPANEPPPPGPMPPAPRRGGGVGVGGGGTGVGGG---DRDRDSGVVGARPR 62
Query: 256 L-PLMSEPRTGEKGKRRRRDGRGWGGL--RGRAGGPRSAEAGGGKRLIPNCWGP 306
P P G G R W G GPR +A P C GP
Sbjct: 63 ASPPPQGPLPGPPGALHR-----WALAVPPGAVAGPRPQQASP-----PPCGGP 106
>gi|209977019 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 40.8 bits (94), Expect = 0.002
Identities = 44/154 (28%), Positives = 56/154 (36%), Gaps = 25/154 (16%)
Query: 143 GRGGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPRRRRR 202
G G + + A P +SP P G LP PP A A +P
Sbjct: 46 GGGDRDRDSGVVGARPRASPPPQGP--------LP----GPPGALHRWALAVP------- 86
Query: 203 PTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPLMSEP 262
P R ++ SPP GG GGG G GA A +A G G + +
Sbjct: 87 PGAVAGPRPQQASPPPCGGPGGPGGGPGDALGAAAAGVGAAGVVVGVGGAVG----VGGC 142
Query: 263 RTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAGGG 296
+G +RRR G G + G G P E G G
Sbjct: 143 CSGPGHSKRRRQAPGVGAVGG--GSPEREEVGAG 174
Score = 33.9 bits (76), Expect = 0.21
Identities = 34/114 (29%), Positives = 40/114 (35%), Gaps = 20/114 (17%)
Query: 200 RRRPTCPCCSRCRELSPP----MGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPR 255
+++P P E PP P GGG G G G G G G +G +G PR
Sbjct: 6 KKKPPPPDADPANEPPPPGPMPPAPRRGGGVGVGGGGTGVGGG---DRDRDSGVVGARPR 62
Query: 256 L-PLMSEPRTGEKGKRRRRDGRGWGGL--RGRAGGPRSAEAGGGKRLIPNCWGP 306
P P G G R W G GPR +A P C GP
Sbjct: 63 ASPPPQGPLPGPPGALHR-----WALAVPPGAVAGPRPQQASP-----PPCGGP 106
>gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 40.4 bits (93), Expect = 0.002
Identities = 49/166 (29%), Positives = 58/166 (34%), Gaps = 31/166 (18%)
Query: 140 GPPGRGGPGQVAAAAAAAPASSPLP------PGRWCLGDQRRLPPATAAPP-WASSATAW 192
G G G G+ A A A A P+ PG G R+ P WA
Sbjct: 39 GGGGLGSGGRSAQRRAGAGARRPIGAAPSVGPGGELQGWGRKSGCRPPGPEGWAGGRKLR 98
Query: 193 RLPQPRRRRRPTC--PCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCL 250
R PRR C PC P G G GAGAG G A + E A
Sbjct: 99 RWLPPRRFSNFCCRSPCAQTAVRRRRRRAPSPRGAGWREGAGAGRGTPATMAGGEWA--- 155
Query: 251 GCLPRLPLMSEP-RTGEKGKRRR---------RDGRGWGGLRGRAG 286
+EP ++G+RRR R GRG G L G +G
Sbjct: 156 ---------AEPLHLPQRGRRRRFTCRSGRPPRRGRGGGALGGASG 192
Score = 36.6 bits (83), Expect = 0.033
Identities = 37/105 (35%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 196 QPRRRRRPTCPCCSRCRELSPPMGPDLGG--GGGGAGAGAGAGAGAQRSAAEAAGCLGCL 253
QP RR +P + +P G G GGGG G G+G G AQR A A
Sbjct: 6 QPARRLQPRKSSFPGDGDEAPGPGGGEGAAAGGGGGGLGSG-GRSAQRRAGAGA------ 58
Query: 254 PRLPLMSEPRTGEKGKRRRRDGRGWGGLRG-RAGGPRSAEAGGGK 297
R P+ + P G G+ +GWG G R GP AGG K
Sbjct: 59 -RRPIGAAPSVGPGGEL-----QGWGRKSGCRPPGP-EGWAGGRK 96
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 40.4 bits (93), Expect = 0.002
Identities = 26/73 (35%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 224 GGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGLRG 283
GGGGG G G G G G R + G G G G R GRG+G G
Sbjct: 367 GGGGGGGGGWGGGGGGGRGGFQGRGDYG-----------GRGGYGGRGGYGGRGYGDPYG 415
Query: 284 RAGGPRSAEAGGG 296
GG GGG
Sbjct: 416 GGGGGGGGGGGGG 428
Score = 32.3 bits (72), Expect = 0.61
Identities = 26/82 (31%), Positives = 28/82 (34%), Gaps = 20/82 (24%)
Query: 216 PPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPLMSEPRTGEKGKRRRRDG 275
PP GGGG G G G G G + G R G G G
Sbjct: 323 PPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGG--------------RGGWGG-----GG 363
Query: 276 RGWGGLRGRAGGPRSAEAGGGK 297
GWGG G GG GGG+
Sbjct: 364 GGWGG-GGGGGGGWGGGGGGGR 384
Score = 32.3 bits (72), Expect = 0.61
Identities = 23/74 (31%), Positives = 24/74 (32%), Gaps = 21/74 (28%)
Query: 223 GGGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGLR 282
GGGGGG G G G G G + G G G G GG
Sbjct: 339 GGGGGGGGRGGGGGGGGRGGWGGGGGGWG---------------------GGGGGGGGWG 377
Query: 283 GRAGGPRSAEAGGG 296
G GG R G G
Sbjct: 378 GGGGGGRGGFQGRG 391
Score = 29.3 bits (64), Expect = 5.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 224 GGGGGAGAGAGAGAGAQR 241
GGGGG G G G G G +R
Sbjct: 415 GGGGGGGGGGGGGGGYRR 432
Score = 28.9 bits (63), Expect = 6.8
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 219 GPDLGGGGGGAGAGAGAG 236
G GGGGGG G G G G
Sbjct: 411 GDPYGGGGGGGGGGGGGG 428
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 40.4 bits (93), Expect = 0.002
Identities = 49/170 (28%), Positives = 59/170 (34%), Gaps = 15/170 (8%)
Query: 141 PPGRGGPGQVAAA----AAAAPASSPLPPGRW--CLGDQRRLPPATAAPPWASSATAWRL 194
P G GGP V +AAPAS P GR C ++SA A
Sbjct: 160 PGGGGGPAAVPEFNNYYGSAAPASGG-PGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGA 218
Query: 195 P---QPRRRRRPTCPC--CSRCRELSPPMGPDLGGGGGGAGAGAGAGAGAQRSAAEAAGC 249
P P + P C+ S P GGGGGG G G+G G G + A AG
Sbjct: 219 PGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGA 278
Query: 250 LGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGL---RGRAGGPRSAEAGGG 296
+ G G G+G L R + GG GGG
Sbjct: 279 GAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGG 328
Score = 38.5 bits (88), Expect = 0.009
Identities = 30/86 (34%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 223 GGGGGGAGAGAGAGAGAQRSAAEAA----------GCLGCLPRLPLMSEPRTGEKGKRRR 272
GGGGGG GAGAGA +AA AA G G ++S PR G
Sbjct: 264 GGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMM- 322
Query: 273 RDGRGWGGLRGRAGGPRSAEAGGGKR 298
G G GG + + AGG +R
Sbjct: 323 --GPGGGGAASLSKAAAGSAAGGFQR 346
Score = 29.6 bits (65), Expect = 4.0
Identities = 48/182 (26%), Positives = 53/182 (29%), Gaps = 48/182 (26%)
Query: 148 GQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPRRRRRPTCPC 207
G +AA A P PP GD+ PP P R P
Sbjct: 102 GGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGG---------------RYEHPG 146
Query: 208 CSRCRELSPPMGPDLGGGG------------------GGAGAGAG-----------AGAG 238
PP+ GGGG GG G AG G G
Sbjct: 147 LGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMG 206
Query: 239 AQRSA-AEAAGCLGCLPRLPLMSEPRTGEKGKR---RRRDGRGWGGLRGRAGGPRSAEAG 294
SA A AAG G + L E + R G G GG G GG S G
Sbjct: 207 MMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGG 266
Query: 295 GG 296
GG
Sbjct: 267 GG 268
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.141 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,084,617
Number of Sequences: 37866
Number of extensions: 1071905
Number of successful extensions: 16909
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 789
Number of HSP's that attempted gapping in prelim test: 9855
Number of HSP's gapped (non-prelim): 4719
length of query: 336
length of database: 18,247,518
effective HSP length: 103
effective length of query: 233
effective length of database: 14,347,320
effective search space: 3342925560
effective search space used: 3342925560
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.