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Search of human proteins with 239745917
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo
sapiens]
(522 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo ... 1078 0.0
gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo ... 933 0.0
gi|239756916 PREDICTED: hypothetical protein [Homo sapiens] 915 0.0
gi|169183786 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|169179717 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|169180121 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|169172209 PREDICTED: hypothetical protein [Homo sapiens] 40 0.007
gi|169170953 PREDICTED: hypothetical protein [Homo sapiens] 40 0.007
gi|239508753 PREDICTED: hypothetical protein [Homo sapiens] 40 0.007
gi|116089331 human immunodeficiency virus type I enhancer bindin... 40 0.007
gi|189181750 human immunodeficiency virus type I enhancer bindin... 39 0.009
gi|32307166 Rho guanine exchange factor 15 [Homo sapiens] 39 0.012
gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens] 39 0.015
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 38 0.020
gi|116686120 periaxin isoform 2 [Homo sapiens] 38 0.020
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 37 0.044
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 37 0.044
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 37 0.044
gi|40018612 MyoD family inhibitor domain containing protein isof... 37 0.057
gi|148833508 notch1 preproprotein [Homo sapiens] 36 0.075
gi|239754516 PREDICTED: hypothetical protein [Homo sapiens] 36 0.075
gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo ... 36 0.075
gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo ... 36 0.075
gi|239508758 PREDICTED: hypothetical protein [Homo sapiens] 36 0.075
gi|148536864 SWI/SNF-related matrix-associated actin-dependent r... 36 0.075
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 36 0.075
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 36 0.098
gi|145309328 papilin [Homo sapiens] 36 0.098
gi|224458284 Rho GTPase activating protein 23 [Homo sapiens] 35 0.17
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 35 0.17
>gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo
sapiens]
Length = 522
Score = 1078 bits (2788), Expect = 0.0
Identities = 522/522 (100%), Positives = 522/522 (100%)
Query: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS
Sbjct: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
Query: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALR 120
LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALR
Sbjct: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALR 120
Query: 121 PQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELGKGPGPPEARAGIRPRLTVDV 180
PQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELGKGPGPPEARAGIRPRLTVDV
Sbjct: 121 PQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELGKGPGPPEARAGIRPRLTVDV 180
Query: 181 GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTLDGA 240
GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTLDGA
Sbjct: 181 GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTLDGA 240
Query: 241 EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGVDLCRGWTG 300
EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGVDLCRGWTG
Sbjct: 241 EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGVDLCRGWTG 300
Query: 301 ARPLASGHQRLPSPSTLRRNPLKPRVLGVHRDQQMRHWPLRVWSPRSRVPGLDMLLVRAP 360
ARPLASGHQRLPSPSTLRRNPLKPRVLGVHRDQQMRHWPLRVWSPRSRVPGLDMLLVRAP
Sbjct: 301 ARPLASGHQRLPSPSTLRRNPLKPRVLGVHRDQQMRHWPLRVWSPRSRVPGLDMLLVRAP 360
Query: 361 RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW 420
RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW
Sbjct: 361 RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW 420
Query: 421 AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA 480
AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA
Sbjct: 421 AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA 480
Query: 481 AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 522
AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL
Sbjct: 481 AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 522
>gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo
sapiens]
Length = 490
Score = 933 bits (2412), Expect = 0.0
Identities = 466/522 (89%), Positives = 469/522 (89%), Gaps = 32/522 (6%)
Query: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS
Sbjct: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
Query: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALR 120
LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLP + P G A
Sbjct: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPSNQYQPRPGLPVQAAGCAGARC 120
Query: 121 PQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELGKGPGPPEARAGIRPRLTVDV 180
PQ ++ GKGPGPPEARAGIRPRLTVDV
Sbjct: 121 PQGW--------------------------------LKSGKGPGPPEARAGIRPRLTVDV 148
Query: 181 GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTLDGA 240
GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTLDGA
Sbjct: 149 GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTLDGA 208
Query: 241 EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGVDLCRGWTG 300
EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGVDLCRGWTG
Sbjct: 209 EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGVDLCRGWTG 268
Query: 301 ARPLASGHQRLPSPSTLRRNPLKPRVLGVHRDQQMRHWPLRVWSPRSRVPGLDMLLVRAP 360
ARPLASGHQRLPSPSTLRRNPLKPRVLGVHRDQQMRHWPLRVWSPRSRVPGLDMLLVRAP
Sbjct: 269 ARPLASGHQRLPSPSTLRRNPLKPRVLGVHRDQQMRHWPLRVWSPRSRVPGLDMLLVRAP 328
Query: 361 RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW 420
RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW
Sbjct: 329 RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW 388
Query: 421 AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA 480
AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA
Sbjct: 389 AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA 448
Query: 481 AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 522
AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL
Sbjct: 449 AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 490
>gi|239756916 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 915 bits (2365), Expect = 0.0
Identities = 460/522 (88%), Positives = 460/522 (88%), Gaps = 58/522 (11%)
Query: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS
Sbjct: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
Query: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALR 120
LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALR
Sbjct: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALR 120
Query: 121 PQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELGKGPGPPEARAGIRPRLTVDV 180
PQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVEL GPGPPEARAGIRPRLTVDV
Sbjct: 121 PQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELYPGPGPPEARAGIRPRLTVDV 180
Query: 181 GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTLDGA 240
GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAA LTLDGA
Sbjct: 181 GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAA---------------VTLTLDGA 225
Query: 241 EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGVDLCRGWTG 300
EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDG
Sbjct: 226 EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDG--------- 276
Query: 301 ARPLASGHQRLPSPSTLRRNPLKPRVLGVHRDQQMRHWPLRVWSPRSRVPGLDMLLVRAP 360
MRHWPLRVWSPRSRVPGLDMLLVRAP
Sbjct: 277 ----------------------------------MRHWPLRVWSPRSRVPGLDMLLVRAP 302
Query: 361 RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW 420
RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW
Sbjct: 303 RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW 362
Query: 421 AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA 480
AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA
Sbjct: 363 AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA 422
Query: 481 AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 522
AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL
Sbjct: 423 AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 464
>gi|169183786 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 427 QAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEAR 486
+ G+ P S SPWL R+ GRRP G G G G R G A A
Sbjct: 9 RGGILSWRAPQRSPGSLSPWLLGRR-------GRRPWGSSRGLGGGDRWLGMEEAKPRAF 61
Query: 487 ARGPAGRAPSPSAALSGRGDRGRTGATRCG 516
+ PAG +PS A DR R CG
Sbjct: 62 SPAPAGDFQAPSTA-----DRARARGRWCG 86
>gi|169179717 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 427 QAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEAR 486
+ G+ P S SPWL R+ GRRP G G G G R G A A
Sbjct: 9 RGGILSWRAPQRSPGSLSPWLLGRR-------GRRPWGSSRGLGGGDRWLGMEEAKPRAF 61
Query: 487 ARGPAGRAPSPSAALSGRGDRGRTGATRCG 516
+ PAG +PS A DR R CG
Sbjct: 62 SPAPAGDFQAPSTA-----DRARARGRWCG 86
>gi|169180121 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 427 QAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEAR 486
+ G+ P S SPWL R+ GRRP G G G G R G A A
Sbjct: 9 RGGILSWRAPQRSPGSLSPWLLGRR-------GRRPWGSSRGLGGGDRWLGMEEAKPRAF 61
Query: 487 ARGPAGRAPSPSAALSGRGDRGRTGATRCG 516
+ PAG +PS A DR R CG
Sbjct: 62 SPAPAGDFQAPSTA-----DRARARGRWCG 86
>gi|169172209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 39.7 bits (91), Expect = 0.007
Identities = 43/151 (28%), Positives = 54/151 (35%), Gaps = 17/151 (11%)
Query: 368 PSVRQCQRRFSASRSH---SYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRWAGRL 424
P V +C + + R PR V+ P+PR ++P S R GR
Sbjct: 3 PQVEKCHKAGNEERDQVLADARPRRCCVVEAPGPMPRGWILPGARSEERGARLAESRGR- 61
Query: 425 VLQAGVTLTCPPWASRQPCSPWLKMRKTLAPY----PGGRRPQGRRDGRGAGTRGAGRSA 480
GVT W SRQP L L P GG R+G G G +
Sbjct: 62 ----GVTPRA-SW-SRQPAGGPLSSEGHLLPLVQRDGGGLAEHRGREGEEGVRAGGGGTG 115
Query: 481 AGDEARARGPAGRAPSPSAALSGRGDRGRTG 511
E R G GR P AA++G G G
Sbjct: 116 ---EVRGGGSPGRQPVGRAAVTGEAGAGAAG 143
>gi|169170953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 39.7 bits (91), Expect = 0.007
Identities = 43/151 (28%), Positives = 54/151 (35%), Gaps = 17/151 (11%)
Query: 368 PSVRQCQRRFSASRSH---SYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRWAGRL 424
P V +C + + R PR V+ P+PR ++P S R GR
Sbjct: 3 PQVEKCHKAGNEERDQVLADARPRRCCVVEAPGPMPRGWILPGARSEERGARLAESRGR- 61
Query: 425 VLQAGVTLTCPPWASRQPCSPWLKMRKTLAPY----PGGRRPQGRRDGRGAGTRGAGRSA 480
GVT W SRQP L L P GG R+G G G +
Sbjct: 62 ----GVTPRA-SW-SRQPAGGPLSSEGHLLPLVQRDGGGLAEHRGREGEEGVRAGGGGTG 115
Query: 481 AGDEARARGPAGRAPSPSAALSGRGDRGRTG 511
E R G GR P AA++G G G
Sbjct: 116 ---EVRGGGSPGRQPVGRAAVTGEAGAGAAG 143
>gi|239508753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 39.7 bits (91), Expect = 0.007
Identities = 43/151 (28%), Positives = 54/151 (35%), Gaps = 17/151 (11%)
Query: 368 PSVRQCQRRFSASRSH---SYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRWAGRL 424
P V +C + + R PR V+ P+PR ++P S R GR
Sbjct: 3 PQVEKCHKAGNEERDQVLADARPRRCCVVEAPGPMPRGWILPGARSEERGARLAESRGR- 61
Query: 425 VLQAGVTLTCPPWASRQPCSPWLKMRKTLAPY----PGGRRPQGRRDGRGAGTRGAGRSA 480
GVT W SRQP L L P GG R+G G G +
Sbjct: 62 ----GVTPRA-SW-SRQPAGGPLSSEGHLLPLVQRDGGGLAEHRGREGEEGVRAGGGGTG 115
Query: 481 AGDEARARGPAGRAPSPSAALSGRGDRGRTG 511
E R G GR P AA++G G G
Sbjct: 116 ---EVRGGGSPGRQPVGRAAVTGEAGAGAAG 143
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 39.7 bits (91), Expect = 0.007
Identities = 48/158 (30%), Positives = 58/158 (36%), Gaps = 27/158 (17%)
Query: 38 PRREKLTPWLPGPCSEPPTS-------LCSLGSLSQFGKPGAQLQLRPRPRGPPRFLTWV 90
PR W PG PP S L GS S G+ G L L PR PP L
Sbjct: 2064 PRYSPTRRWSPGQAESPPRSAPPGKWALAGPGSPSA-GEHGPGLGLDPRVLFPPAPLPH- 2121
Query: 91 HVALNLLPRGHEE-RSPWEAKSPRGPYAALRP-QPCAS-PLSQLRYLRGELSDHCQPPLV 147
LL R E SPW+ R P + P P +S P S L G + + +
Sbjct: 2122 ----KLLSRSPETCASPWQKAESRSPSCSPGPAHPLSSRPFSALHDFHGHILARTEENIF 2177
Query: 148 SKSFKPIHRVELGKGPGP---------PEARAGIRPRL 176
S P+H L + P P +AR G P L
Sbjct: 2178 --SHLPLHSQHLTRAPCPLIPIGGIQMVQARPGAHPTL 2213
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 39.3 bits (90), Expect = 0.009
Identities = 50/158 (31%), Positives = 61/158 (38%), Gaps = 28/158 (17%)
Query: 38 PRREKLTPWLPGPCSEPPTS-------LCSLGSLSQFGKPGAQLQLRPRPRGPPRFLTWV 90
PR W PG PP S L GS S G+ G L L PR PP L
Sbjct: 2064 PRYSPTRRWSPGQAESPPRSAPPGKWALAGPGSPSA-GEHGPGLGLDPRVLFPPAPLPH- 2121
Query: 91 HVALNLLPRGHEE-RSPWEAKSPRGPYAALRP-QPCAS-PLSQLRYLRGELSDHCQPPLV 147
LL R E SPW+A+S R P + P P +S P S L G + + +
Sbjct: 2122 ----KLLSRSPETCASPWKAES-RSPSCSPGPAHPLSSRPFSALHDFHGHILARTEENIF 2176
Query: 148 SKSFKPIHRVELGKGPGP---------PEARAGIRPRL 176
S P+H L + P P +AR G P L
Sbjct: 2177 --SHLPLHSQHLTRAPCPLIPIGGIQMVQARPGAHPTL 2212
>gi|32307166 Rho guanine exchange factor 15 [Homo sapiens]
Length = 841
Score = 38.9 bits (89), Expect = 0.012
Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 435 PPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRA 494
PP S PC+P L M LA G G R AGR G E RA+
Sbjct: 120 PPKPSGSPCTPLLPMAGVLA-------QNGSASAPGTVRRLAGRFEGGAEGRAQDADAPE 172
Query: 495 PSPSAALSGRGDRGR----TGATRCGSPEAGL 522
P A G+R +G+ G+P+AGL
Sbjct: 173 PGLQARADVNGEREAPLTGSGSQENGAPDAGL 204
>gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens]
Length = 739
Score = 38.5 bits (88), Expect = 0.015
Identities = 63/226 (27%), Positives = 85/226 (37%), Gaps = 34/226 (15%)
Query: 60 SLGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHE---ERSPWEAKSPRGPY 116
SLG L G GA P P+ P+ + +L L P+ E E + EA +G
Sbjct: 355 SLGPLLLTGGGGA-----PPPQPSPQGASETKTSLVLDPQTGEVRLEEAQSEAPETKGAQ 409
Query: 117 AALRPQPCAS-----PLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELGKGPGPPEARAG 171
A P P PL+Q+ + PP + V L PG P +
Sbjct: 410 VAA-PGPALGEEVLGPLAQVVPGPPTAATFPLPPGPVPAVAAPQVVPLSPPPGYPTGLSP 468
Query: 172 IRPRLTVDVGLLVDLRDAQQIRTL--------LLAAGPGLPPRQRGLEVKLVAAHQPPSR 223
P L L + Q+ TL LLAAGPG P VK+ AA P +
Sbjct: 469 TSPLLN-----LPQVVPTSQVVTLPQAVGPLQLLAAGPGSP-------VKVAAAAGPANV 516
Query: 224 NTAPAPTAPTALTLDGAEAPALVFAVVLGGGTPQVTILAARAGAAV 269
+ + TAL L A AP G+P VT +A + G +
Sbjct: 517 HLINSGVGVTALQLPSATAPGNFLLANPVSGSPIVTGVAVQQGKII 562
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 38.1 bits (87), Expect = 0.020
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 436 PWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAP 495
P A QP +P + + + P +RP+G GR A + GA AG A+AR R P
Sbjct: 127 PAAPAQPPAPRPESQLSDRPQSWEQRPRG--PGRSARSAGAAAPPAGGLAQARQARRRRP 184
Query: 496 SPSAALSGR 504
+AAL+GR
Sbjct: 185 RAAAALTGR 193
>gi|116686120 periaxin isoform 2 [Homo sapiens]
Length = 1461
Score = 38.1 bits (87), Expect = 0.020
Identities = 98/354 (27%), Positives = 132/354 (37%), Gaps = 62/354 (17%)
Query: 105 SPWEAKSPRGPYAALRPQPCASPLSQLRYLRGELSDHCQ--PPLVSKSFKPIHRVELG-- 160
S +E K PR A L Q SP+ + + + G L P V SF R+ G
Sbjct: 113 SGYEIKGPRAKVAKLNIQSL-SPVKKKKMVPGALGVPADLAPVDVEFSFPKFSRLRRGLK 171
Query: 161 ----KGPGP--PEARAGIRPRLTV-DVGLLVDLRDAQQIRTLLLAAGPGLPPRQRGLE-- 211
KGP P P R PRL V +V +AQ R L AA P PPR+ +E
Sbjct: 172 AEAVKGPVPAAPARRRLQLPRLRVREVA-----EEAQAAR--LAAAAP--PPRKAKVEAE 222
Query: 212 -----------VKLVAAHQPPSRNTAPAPTAPTAL--------------TLD-GAEAPAL 245
V+LV P + P +AP A TL GA AP
Sbjct: 223 VAAGARFTAPQVELVGPRLPGAEVGVPQVSAPKAAPSAEAAGGFALHLPTLGLGAPAPPA 282
Query: 246 VFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGVDLCRGWTGARPLA 305
V A +G PQV + A + + L + +GA V +LD G A P A
Sbjct: 283 VEAPAVGIQVPQVELPALPSLPTLPTLPCLETREGAVSVVVPTLDVAAPTVGVDLALPGA 342
Query: 306 SGHQRLPSPSTLRRNP------LKPRVLGVHRDQQMRHWP-LRVWSPRSRVP--GLDMLL 356
R +P + P R V + + P RV PR R+P GL +L
Sbjct: 343 EVEARGEAPEVALKMPRLSFPRFGARAKEVAEAKVAKVSPEARVKGPRLRMPTFGLSLLE 402
Query: 357 VR--APRSKDS--WSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVP 406
R AP +S P+++ S +P+ V +P P + VP
Sbjct: 403 PRPAAPEVVESKLKLPTIKMPSLGIGVSGPEVKVPKGPEVKLPKAPEVKLPKVP 456
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 37.0 bits (84), Expect = 0.044
Identities = 28/73 (38%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 448 KMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDR 507
+ R +P GRR + R G G RG GR+ G RG GRAP + GRG R
Sbjct: 56 RSRAAGSPRTRGRRTEERPSGSRLGDRGRGRALPGGRLGGRG-RGRAPE---RVGGRG-R 110
Query: 508 GRTGATRCGSPEA 520
GR A +P A
Sbjct: 111 GRGTAAPRAAPAA 123
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 37.0 bits (84), Expect = 0.044
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 436 PWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAP 495
P A QP +P + + + P ++P+G GR A + GA AG A+AR R P
Sbjct: 127 PAAPAQPPAPRPESQLSDRPQSWEQKPRG--PGRSARSAGAAAPPAGGLAQARQARRRRP 184
Query: 496 SPSAALSGR 504
+AAL+GR
Sbjct: 185 RAAAALTGR 193
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 37.0 bits (84), Expect = 0.044
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 436 PWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAP 495
P A QP +P + + + P ++P+G GR A + GA AG A+AR R P
Sbjct: 127 PAAPAQPPAPRPESQLSDRPQSWEQKPRG--PGRSARSAGAAAPPAGGLAQARQARRRRP 184
Query: 496 SPSAALSGR 504
+AAL+GR
Sbjct: 185 RAAAALTGR 193
>gi|40018612 MyoD family inhibitor domain containing protein isoform
p40 [Homo sapiens]
Length = 355
Score = 36.6 bits (83), Expect = 0.057
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 451 KTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDRGRT 510
+ LA +PG +R + RR G GA T G G + + + PA +PS R R R
Sbjct: 47 RRLANFPGRKRRRRRRKGLGATTGGCGEAVS-----SLHPAPHSPSSVRPAGRRARRQRR 101
Query: 511 GATRCGSPEAG 521
GA P +G
Sbjct: 102 GAGSAERPMSG 112
Score = 32.3 bits (72), Expect = 1.1
Identities = 27/66 (40%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 454 APY-PGGRRPQG---RRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDRGR 509
AP+ P RP G RR RGAG+ S AG EA A GP G A +G G G
Sbjct: 82 APHSPSSVRPAGRRARRQRRGAGSAERPMSGAG-EALAPGPVG---PQRVAEAGGGQLGS 137
Query: 510 TGATRC 515
T +C
Sbjct: 138 TAQGKC 143
>gi|148833508 notch1 preproprotein [Homo sapiens]
Length = 2555
Score = 36.2 bits (82), Expect = 0.075
Identities = 41/130 (31%), Positives = 49/130 (37%), Gaps = 25/130 (19%)
Query: 50 PCSEPPTSLCS----LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERS 105
P PP LCS LGSL KPG Q + +P L G +E
Sbjct: 2133 PTLSPP--LCSPNGYLGSL----KPGVQGKKVRKPSSKG------------LACGSKEAK 2174
Query: 106 PWEA---KSPRGPYAALRPQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELGKG 162
+A KS G L SP+ L G LSD PPL+ F+ V L
Sbjct: 2175 DLKARRKKSQDGKGCLLDSSGMLSPVDSLESPHGYLSDVASPPLLPSPFQQSPSVPLNHL 2234
Query: 163 PGPPEARAGI 172
PG P+ GI
Sbjct: 2235 PGMPDTHLGI 2244
>gi|239754516 PREDICTED: hypothetical protein [Homo sapiens]
Length = 334
Score = 36.2 bits (82), Expect = 0.075
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 462 PQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGR 504
P+ ++ G AG RG GR AA R GR P+P A+ R
Sbjct: 216 PRAKKAGANAGARGQGRGAAAGPERPPHVQGRRPAPRGAVGAR 258
>gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo
sapiens]
Length = 334
Score = 36.2 bits (82), Expect = 0.075
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 462 PQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGR 504
P+ ++ G AG RG GR AA R GR P+P A+ R
Sbjct: 216 PRAKKAGANAGARGQGRGAAAGPERPPHVQGRRPAPRGAVGAR 258
>gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo
sapiens]
Length = 329
Score = 36.2 bits (82), Expect = 0.075
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 462 PQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGR 504
P+ ++ G AG RG GR AA R GR P+P A+ R
Sbjct: 211 PRAKKAGANAGARGQGRGAAAGPERPPHVQGRRPAPRGAVGAR 253
>gi|239508758 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 36.2 bits (82), Expect = 0.075
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 462 PQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGR 504
P+ ++ G AG RG GR AA R GR P+P A+ R
Sbjct: 211 PRAKKAGANAGARGQGRGAAAGPERPPHVQGRRPAPRGAVGAR 253
>gi|148536864 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d2 isoform 1 [Homo sapiens]
Length = 531
Score = 36.2 bits (82), Expect = 0.075
Identities = 46/172 (26%), Positives = 69/172 (40%), Gaps = 30/172 (17%)
Query: 68 GKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGP-YAALRPQPCAS 126
G A L P P GP +LP G R P A GP AA RP A
Sbjct: 19 GAVAAALGAPPPPAGP-----------GMLP-GPALRGPGPAGGVGGPGAAAFRPMGPAG 66
Query: 127 PLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELGKGPGPP-EARAGIRPRLTVDVGLLVD 185
P +Q + +P + + P+ +++G G P A A +RP G+
Sbjct: 67 PAAQYQ----------RPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRP------GMPPT 110
Query: 186 LRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTL 237
+ D + R L+ A P +P ++RGL+ + +A P R P + + L
Sbjct: 111 MMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDL 162
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 36.2 bits (82), Expect = 0.075
Identities = 54/210 (25%), Positives = 71/210 (33%), Gaps = 33/210 (15%)
Query: 31 GRAGRQHPRREKLTPW---LPGPCSEPPTSLCSLGSLSQFGKPGAQLQLRPRPRG----- 82
G G HP + P + GP S+ P L L G PG + P P+G
Sbjct: 748 GMQGPPHPHGIQGGPGSQGIQGPVSQGP--LMGLNPRGMQGPPGPRENQGPAPQGMIMGH 805
Query: 83 PPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALRPQPCASPLSQLRYLRGELSDHC 142
PP+ + H LL G P E + P+ P P S L + LRG
Sbjct: 806 PPQEMRGPHPPGGLLGHG-----PQEMRGPQEIRGMQGPPPQGSMLGPPQELRGPPGSQS 860
Query: 143 QPPLVSKSFKPIHRVELGKGPGPPEARAGIRPRLTVDVGLLVDLRDAQQIRTLLLAAGPG 202
Q S P + + PGP + R + QQ +T LL GP
Sbjct: 861 QQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPI-----PFQQQKTPLLGDGPR 915
Query: 203 LPPRQRGLEVKLVAAHQPPSRNTAPAPTAP 232
P Q G ++T P P P
Sbjct: 916 APFNQEG-------------QSTGPPPLIP 932
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 35.8 bits (81), Expect = 0.098
Identities = 24/67 (35%), Positives = 28/67 (41%)
Query: 455 PYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDRGRTGATR 514
P PG R + R G+ G+G AG E RAR R S RG R R A R
Sbjct: 753 PAPGESRDRARGAGQPGPGSGSGAERAGPERRARDTQTRTRRDKLTDSARGGRARLTAGR 812
Query: 515 CGSPEAG 521
E+G
Sbjct: 813 RVRRESG 819
Score = 30.0 bits (66), Expect = 5.4
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 23/81 (28%)
Query: 460 RRPQGRRDGRGAGTRGAGRSAAG----DEARARGPAGRA-----PSPSAALSGRGD---- 506
RR GRR GA ++GA R AA E+R PA A PSP+AA S RG
Sbjct: 815 RRESGRRRA-GATSQGAIRRAASRARKGESRRPLPANSAGRPALPSPAAARSARGSWGLR 873
Query: 507 ---------RGRTGATRCGSP 518
RG RC +P
Sbjct: 874 ASRPSRAAPRGPPNFQRCPAP 894
>gi|145309328 papilin [Homo sapiens]
Length = 1251
Score = 35.8 bits (81), Expect = 0.098
Identities = 36/128 (28%), Positives = 44/128 (34%), Gaps = 25/128 (19%)
Query: 389 EAVVLVPGQPVPRHCMVPRLNSRFRETHFQRWAGRLVLQAGVTLTCPPW----------- 437
E V P P C++P + + WA R A V W
Sbjct: 713 EGCVGQPSHAYPVRCLLPSAHGSCAD-----WAARWYFVASVGQCNRFWYGGCHGNANNF 767
Query: 438 ASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAG----R 493
AS Q C M G RRPQ GR T G G S AG++ ++ G R
Sbjct: 768 ASEQEC-----MSSCQGSLHGPRRPQPGASGRSTHTDGGGSSPAGEQEPSQHRTGAAVQR 822
Query: 494 APSPSAAL 501
P PS L
Sbjct: 823 KPWPSGGL 830
>gi|224458284 Rho GTPase activating protein 23 [Homo sapiens]
Length = 1397
Score = 35.0 bits (79), Expect = 0.17
Identities = 61/232 (26%), Positives = 89/232 (38%), Gaps = 28/232 (12%)
Query: 16 ITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCSLGSLSQFGKPGAQLQ 75
++P+F G W+ R+ + P T LPGP + PP+ L L L G
Sbjct: 277 VSPRFERCG---WASQRSSARTPACP--TRDLPGPQAPPPSGLQGLDDLGYIGYRSYSPS 331
Query: 76 LRPRPRGPPRFLTWVHVALNLLPRGHEERSPWE-AKSPRGPYAALRPQPCASPLSQLRYL 134
+ R G L++ LP + +SP P +RP+P L
Sbjct: 332 FQ-RRTGLLHALSFRDSPFGGLPTFNLAQSPASFPPEASEPPRVVRPEPSTRALEPPAED 390
Query: 135 RG-ELSDHCQPPLVSK-SFKPIHRVELGKGPGPPEARA-GIRPRLTVDVGLLVDLRDAQQ 191
RG E+ +PP K P ++ LG G PE A G RL V L D+
Sbjct: 391 RGDEVVLRQKPPTGRKVQLTPARQMNLGFGDESPEPEASGRGERLGRKVAPLATTEDS-- 448
Query: 192 IRTLLLAAGPGLPPRQRGLEVKLVAAHQPPS------RNTAP----APTAPT 233
+ ++ P P + L A H P S N+AP +P++PT
Sbjct: 449 LASIPFIDEPTSP------SIDLQAKHVPASAVVSSAMNSAPVLGTSPSSPT 494
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 35.0 bits (79), Expect = 0.17
Identities = 55/214 (25%), Positives = 80/214 (37%), Gaps = 40/214 (18%)
Query: 64 LSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALRPQP 123
LS G+ + L P +GPP HV GHE R P P LR P
Sbjct: 335 LSVTGEVEPRGYLGPPHQGPPMH----HVP------GHESRGP--------PPHELRGGP 376
Query: 124 CASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELGKGPGPPEARAGIRPRLTVDVGLL 183
P + RG + D PPL + G+ P +AR G+ R GL
Sbjct: 377 LPEPRPLMAEPRGPMLDQRGPPLDGRG---------GRDPRGIDAR-GMEARAMEARGL- 425
Query: 184 VDLRD----AQQIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTLDG 239
D R A + R + A R +EV+ + A +R P P P G
Sbjct: 426 -DARGLEARAMEARAMEARAMEARAMEARAMEVRGMEARGMDTRGPVPGPRGPIP---SG 481
Query: 240 AEAPALV-FAVVLGGGTPQVTIL--AARAGAAVE 270
+ P+ + V+ G+ QV ++ GA+++
Sbjct: 482 MQGPSPINMGAVVPQGSRQVPVMQGTGMQGASIQ 515
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,627,205
Number of Sequences: 37866
Number of extensions: 1636498
Number of successful extensions: 8583
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 273
Number of HSP's that attempted gapping in prelim test: 7871
Number of HSP's gapped (non-prelim): 941
length of query: 522
length of database: 18,247,518
effective HSP length: 107
effective length of query: 415
effective length of database: 14,195,856
effective search space: 5891280240
effective search space used: 5891280240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.