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Search of human proteins with 239745902
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745902 PREDICTED: hypothetical protein [Homo sapiens]
(371 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745902 PREDICTED: hypothetical protein [Homo sapiens] 764 0.0
gi|239756899 PREDICTED: hypothetical protein [Homo sapiens] 762 0.0
gi|113427491 PREDICTED: hypothetical protein [Homo sapiens] 762 0.0
gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo sapi... 55 1e-07
gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo sapi... 55 1e-07
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 54 2e-07
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 52 9e-07
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 52 9e-07
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 52 9e-07
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 51 2e-06
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 50 4e-06
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 49 6e-06
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 49 6e-06
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 49 7e-06
gi|239757749 PREDICTED: hypothetical protein [Homo sapiens] 49 9e-06
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 48 1e-05
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 48 1e-05
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 48 2e-05
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 48 2e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 47 2e-05
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 47 2e-05
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 47 2e-05
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 47 2e-05
gi|50428940 mediator complex subunit 25 [Homo sapiens] 47 2e-05
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 47 3e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 47 4e-05
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 47 4e-05
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 46 5e-05
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 46 5e-05
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 46 5e-05
>gi|239745902 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 764 bits (1974), Expect = 0.0
Identities = 371/371 (100%), Positives = 371/371 (100%)
Query: 1 MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR 60
MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR
Sbjct: 1 MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR 60
Query: 61 RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM
Sbjct: 61 RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
Query: 121 GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180
GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP
Sbjct: 121 GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180
Query: 181 TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA 240
TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA
Sbjct: 181 TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA 240
Query: 241 AGRSRHRVLLALSRESRHLSGARERGRAGRYSNRRNLDSLPRKPSTGFAALSRRVNQAIS 300
AGRSRHRVLLALSRESRHLSGARERGRAGRYSNRRNLDSLPRKPSTGFAALSRRVNQAIS
Sbjct: 241 AGRSRHRVLLALSRESRHLSGARERGRAGRYSNRRNLDSLPRKPSTGFAALSRRVNQAIS 300
Query: 301 CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV 360
CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV
Sbjct: 301 CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV 360
Query: 361 ELGPFKRTLKP 371
ELGPFKRTLKP
Sbjct: 361 ELGPFKRTLKP 371
>gi|239756899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 762 bits (1968), Expect = 0.0
Identities = 370/371 (99%), Positives = 370/371 (99%)
Query: 1 MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR 60
MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR
Sbjct: 1 MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR 60
Query: 61 RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM
Sbjct: 61 RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
Query: 121 GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180
GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP
Sbjct: 121 GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180
Query: 181 TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA 240
TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA
Sbjct: 181 TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA 240
Query: 241 AGRSRHRVLLALSRESRHLSGARERGRAGRYSNRRNLDSLPRKPSTGFAALSRRVNQAIS 300
AGRSRHRVLLALSRESRHLSGARERGRAGRYS RRNLDSLPRKPSTGFAALSRRVNQAIS
Sbjct: 241 AGRSRHRVLLALSRESRHLSGARERGRAGRYSTRRNLDSLPRKPSTGFAALSRRVNQAIS 300
Query: 301 CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV 360
CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV
Sbjct: 301 CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV 360
Query: 361 ELGPFKRTLKP 371
ELGPFKRTLKP
Sbjct: 361 ELGPFKRTLKP 371
>gi|113427491 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 762 bits (1968), Expect = 0.0
Identities = 370/371 (99%), Positives = 370/371 (99%)
Query: 1 MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR 60
MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR
Sbjct: 1 MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR 60
Query: 61 RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM
Sbjct: 61 RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
Query: 121 GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180
GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP
Sbjct: 121 GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180
Query: 181 TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA 240
TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA
Sbjct: 181 TYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRA 240
Query: 241 AGRSRHRVLLALSRESRHLSGARERGRAGRYSNRRNLDSLPRKPSTGFAALSRRVNQAIS 300
AGRSRHRVLLALSRESRHLSGARERGRAGRYS RRNLDSLPRKPSTGFAALSRRVNQAIS
Sbjct: 241 AGRSRHRVLLALSRESRHLSGARERGRAGRYSTRRNLDSLPRKPSTGFAALSRRVNQAIS 300
Query: 301 CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV 360
CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV
Sbjct: 301 CLGTESALEKAEGPTLVTQERWQDFHPSHLTWNPWINQLPLEANPETKGAVYTETGLLWV 360
Query: 361 ELGPFKRTLKP 371
ELGPFKRTLKP
Sbjct: 361 ELGPFKRTLKP 371
>gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 55.1 bits (131), Expect = 1e-07
Identities = 75/242 (30%), Positives = 90/242 (37%), Gaps = 31/242 (12%)
Query: 12 RPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLA-RRTELPGAAPAG-EPRRGDPGVAPS 69
RPP P PQ + RP S PVP + RR P P + P P
Sbjct: 282 RPPQPRVCTFSPQRVSPTTSPRPAS----PVPGSERRGSRPEMTPVSLRSTKEGPETPPR 337
Query: 70 P-----PAPEDSDARGE-DGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLP 123
P P P G+ D +A+ + P G R TG R +R G P
Sbjct: 338 PRDQLPPHPRSRRYSGDSDSSASSAQSGPL-----GTRSDDTGTGPRRERPSRRLTTGTP 392
Query: 124 DSARRPRAPRTPLRP--ERPAP-GVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180
S RRP A R+ R +R P G PGGR A + PSP RR R R A L
Sbjct: 393 ASPRRPPALRSQSRDRLDRGRPRGAPGGRGAQLSV----PSP-ARRARSQSREEQAVLLV 447
Query: 181 TYQLLGYHRAPPRA-SPGGWNTETLNTEDAR-----RRARSATQAPPLALVPARSRARPA 234
G H PR GG T T AR R +R ++ +P L PA P
Sbjct: 448 RRDRDGQHSWVPRGRGSGGSGRSTPQTPRARSPAAPRLSRVSSPSPELGTTPASIFRTPL 507
Query: 235 HL 236
L
Sbjct: 508 QL 509
Score = 38.5 bits (88), Expect = 0.010
Identities = 44/157 (28%), Positives = 58/157 (36%), Gaps = 42/157 (26%)
Query: 63 DPGVAPSPPAPEDS------------------DARGEDGAAAERRPEPRTRDLSGARGQT 104
DP AP PPAP+ + G+ G A P PR++ LS + +
Sbjct: 546 DPARAPDPPAPDSAYCSSSSSSSSLSVLGGKCGQPGDSGRTANGLPGPRSQALSSSSDEG 605
Query: 105 TGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRV--APCTCTSGSPSP 162
+ G G AP +PL P+ GR+ P S P+P
Sbjct: 606 SPCPGMGGPLD---------------APGSPLACTEPSRTWARGRMDTQPDRKPSRIPTP 650
Query: 163 RPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGW 199
R R R SG PA+L + L H PRA P W
Sbjct: 651 RGPR-RPSG---PAELGTWHAL---HSVTPRAEPDSW 680
>gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 55.1 bits (131), Expect = 1e-07
Identities = 75/242 (30%), Positives = 90/242 (37%), Gaps = 31/242 (12%)
Query: 12 RPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLA-RRTELPGAAPAG-EPRRGDPGVAPS 69
RPP P PQ + RP S PVP + RR P P + P P
Sbjct: 282 RPPQPRVCTFSPQRVSPTTSPRPAS----PVPGSERRGSRPEMTPVSLRSTKEGPETPPR 337
Query: 70 P-----PAPEDSDARGE-DGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLP 123
P P P G+ D +A+ + P G R TG R +R G P
Sbjct: 338 PRDQLPPHPRSRRYSGDSDSSASSAQSGPL-----GTRSDDTGTGPRRERPSRRLTTGTP 392
Query: 124 DSARRPRAPRTPLRP--ERPAP-GVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180
S RRP A R+ R +R P G PGGR A + PSP RR R R A L
Sbjct: 393 ASPRRPPALRSQSRDRLDRGRPRGAPGGRGAQLSV----PSP-ARRARSQSREEQAVLLV 447
Query: 181 TYQLLGYHRAPPRA-SPGGWNTETLNTEDAR-----RRARSATQAPPLALVPARSRARPA 234
G H PR GG T T AR R +R ++ +P L PA P
Sbjct: 448 RRDRDGQHSWVPRGRGSGGSGRSTPQTPRARSPAAPRLSRVSSPSPELGTTPASIFRTPL 507
Query: 235 HL 236
L
Sbjct: 508 QL 509
Score = 38.5 bits (88), Expect = 0.010
Identities = 44/157 (28%), Positives = 58/157 (36%), Gaps = 42/157 (26%)
Query: 63 DPGVAPSPPAPEDS------------------DARGEDGAAAERRPEPRTRDLSGARGQT 104
DP AP PPAP+ + G+ G A P PR++ LS + +
Sbjct: 546 DPARAPDPPAPDSAYCSSSSSSSSLSVLGGKCGQPGDSGRTANGLPGPRSQALSSSSDEG 605
Query: 105 TGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRV--APCTCTSGSPSP 162
+ G G AP +PL P+ GR+ P S P+P
Sbjct: 606 SPCPGMGGPLD---------------APGSPLACTEPSRTWARGRMDTQPDRKPSRIPTP 650
Query: 163 RPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGW 199
R R R SG PA+L + L H PRA P W
Sbjct: 651 RGPR-RPSG---PAELGTWHAL---HSVTPRAEPDSW 680
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 54.3 bits (129), Expect = 2e-07
Identities = 87/305 (28%), Positives = 119/305 (39%), Gaps = 57/305 (18%)
Query: 5 PETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVP-------LARRTELPGAAPAG 57
PE P R S R+ P+P+T+ P R P L+RR+ ++P
Sbjct: 1659 PEHPPKSRTARRGS-RSSPEPKTK-SRTPPRRRSSRSSPELTRKARLSRRSRSASSSPET 1716
Query: 58 EPRRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTRE 117
R +PP S + A + R R R S R +TT GR +
Sbjct: 1717 RSR--------TPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPR 1768
Query: 118 GKMGLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQ 177
G +RR + RT R +R +S S S R +R R R + +
Sbjct: 1769 GLQRSRSRSRREKT-RTTRRRDRSG-------------SSQSTSRRRQRSRSRSRVTRRR 1814
Query: 178 LPPTYQLLGYH-RAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHL 236
+ GYH R+P R E+ T RRR RS T PP + +RSR PA
Sbjct: 1815 RGGS----GYHSRSPAR-------QESSRTSSRRRRGRSRT--PPTSRKRSRSRTSPAPW 1861
Query: 237 RVRAAGRSRHRVLLALSRESRH----LSGARERGRAGRYSNRRNLD--SLPRKPSTGFAA 290
+ RSR R A R SR +S R R R S RR+ S+ R+ S A+
Sbjct: 1862 K-----RSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRAS 1916
Query: 291 -LSRR 294
+SRR
Sbjct: 1917 PVSRR 1921
Score = 53.9 bits (128), Expect = 2e-07
Identities = 82/302 (27%), Positives = 118/302 (39%), Gaps = 43/302 (14%)
Query: 7 TPLSLRPPDPNS----VRTVPQPETRLDHNR-PMSRPIFPVPLARRTELPGAAPAGE--- 58
TPL R +S V+ P+ R + + P S+ PL +R+ G++P +
Sbjct: 1531 TPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSR-SGSSPEVDSKS 1589
Query: 59 ---PRRGDPGVAP--------SPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGG 107
PRR G +P +P A SD+ E A A R R+R S ++G+ G
Sbjct: 1590 RLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGR---G 1646
Query: 108 EGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAP-GVPGGRVAPCTCTSGSPSPRPRR 166
EG+ + E S P RT R R +P R P +S S R+
Sbjct: 1647 PSPEGSSSTE------SSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRK 1700
Query: 167 LRVSGRGSPAQLPPTYQLLGYHRAPP--RASPGGWNTETLNTEDARRRARSATQAPPLAL 224
R+S R A P + R PP R SP + E + RR RSA+ +P
Sbjct: 1701 ARLSRRSRSASSSPETR----SRTPPRHRRSPSVSSPEPAEKSRSSRRRRSAS-SPRTKT 1755
Query: 225 VPARSRARPAHLRVRAAGRSRHRVLLALSRESRHLSGARERGRAGRYSNRRNLDSLPRKP 284
R R+ R RSR R RE + R+R + + ++RR S R
Sbjct: 1756 TSRRGRSPSPKPRGLQRSRSRSR------REKTRTTRRRDRSGSSQSTSRRRQRSRSRSR 1809
Query: 285 ST 286
T
Sbjct: 1810 VT 1811
Score = 52.0 bits (123), Expect = 9e-07
Identities = 77/304 (25%), Positives = 116/304 (38%), Gaps = 32/304 (10%)
Query: 7 TPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDPGV 66
TPLS P +P S R S P P L + + + P+ +P +
Sbjct: 384 TPLSQEPVNPPS---------EASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHA 434
Query: 67 APSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSA 126
+ SP +P+ + A G+ E P +++ S R + ++ R G+ P +A
Sbjct: 435 SSSPESPKPAPA---PGSHREISSSPTSKNRSHGRAKRDKSHSHTPSR-RMGRSRSPATA 490
Query: 127 RRPRA-PRTPLR---PERPAPGVPGGRVAPCTCTSGSP-------SP------RPRRLRV 169
+R R+ RTP + +P R A S SP SP R R +
Sbjct: 491 KRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQR 550
Query: 170 SGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARS 229
GR A+ ++ R R+ + + ARRR+RS T P +R+
Sbjct: 551 RGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRT--PTRRRSRSRT 608
Query: 230 RARPAHLRVRAAGRSRHRVLLALSRESRHLSGARERGRAGRYSNRRNLDSLPRKPSTGFA 289
AR R R R R R + R SR S AR GR+ + R S R P+
Sbjct: 609 PARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGR 668
Query: 290 ALSR 293
+ SR
Sbjct: 669 SRSR 672
Score = 49.3 bits (116), Expect = 6e-06
Identities = 63/217 (29%), Positives = 79/217 (36%), Gaps = 21/217 (9%)
Query: 65 GVAPSPPAPEDSDARGEDGAAAERRPEPRT--RDLSGARGQTTGGEGREGAQTREGKMGL 122
G + SP P S +R +RR R+ R S +R T G R R G+
Sbjct: 532 GRSRSPQRPGWSRSRN-----TQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRS 586
Query: 123 PDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSG---RGSPAQLP 179
ARR RTP R R P R S S +P RR R R S ++ P
Sbjct: 587 RTPARRRSRSRTPTR-RRSRSRTPARRGR-----SRSRTPARRRSRTRSPVRRRSRSRSP 640
Query: 180 PTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVR 239
R P R T R R+RS T A +R+ AR R R
Sbjct: 641 ARRSGRSRSRTPARRG-----RSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSR 695
Query: 240 AAGRSRHRVLLALSRESRHLSGARERGRAGRYSNRRN 276
R R R + R H + RGR+G S R+N
Sbjct: 696 TPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKN 732
Score = 42.7 bits (99), Expect = 5e-04
Identities = 75/303 (24%), Positives = 108/303 (35%), Gaps = 41/303 (13%)
Query: 5 PETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDP 64
PET S PP +V PE R P + T G +P+ +PR
Sbjct: 1714 PETR-SRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQR 1772
Query: 65 GVAPSPPAPEDSDARGEDGAAAER--RPEPRTRDLSGARGQTTGGEG------------R 110
+ S + R + +++ R R+R S + GG G R
Sbjct: 1773 SRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSR 1832
Query: 111 EGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCT-SGSPSPRPRRLRV 169
++ R G+ P ++R+ RT P + + R +P T S S +P R R
Sbjct: 1833 TSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRS----RASPATHRRSRSRTPLISRRRS 1888
Query: 170 SGRGSPAQLPPTYQLLGY--HRAPPRASPGGWNTETLNTEDA-RRRARSAT--------- 217
R SP + R+ RASP T RRR+RS T
Sbjct: 1889 RSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRS 1948
Query: 218 QAPPLALVPARSRARPAHLRVRAAGRSRHRVLLALSRESRH----LSGARERGRAGRYSN 273
+ PP+ +RSR P R RSR R R SR ++ R R R +
Sbjct: 1949 RTPPVTRRRSRSRTPPVTRR-----RSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTR 2003
Query: 274 RRN 276
RR+
Sbjct: 2004 RRS 2006
Score = 42.0 bits (97), Expect = 9e-04
Identities = 71/280 (25%), Positives = 104/280 (37%), Gaps = 41/280 (14%)
Query: 31 HNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSPPAPEDSDA--------RGED 82
H+R +R +RR P +R +P+P S A R
Sbjct: 1821 HSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRT 1880
Query: 83 GAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPA 142
+ RR RT +S R ++ R +++R P S RR R+ P+ R
Sbjct: 1881 PLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRAS----PVSRRRSRSRTPPVTRRRSR 1936
Query: 143 PGVPG------GRVAPCTCT-SGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRAS 195
P R P T S S +P R R R SP + R+ R S
Sbjct: 1937 SRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSP---------ITRRRSRSRTS 1987
Query: 196 PGGWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRAAGR--------SRHR 247
P T RR RS ++ P+ +RSR PA +R R+ R SR R
Sbjct: 1988 PVTRRRSRSRTSPVTRR-RSRSRTSPVTRRRSRSRTPPA-IRRRSRSRTPLLPRKRSRSR 2045
Query: 248 VLLALSRESRHLSGARERGRAGRYSNRRNLDSLPRKPSTG 287
LA+ R SR + RG+ S R+ ++ R+ ++G
Sbjct: 2046 SPLAIRRRSRSRTPRTARGKR---SLTRSPPAIRRRSASG 2082
Score = 37.7 bits (86), Expect = 0.017
Identities = 75/313 (23%), Positives = 108/313 (34%), Gaps = 64/313 (20%)
Query: 47 RTELPGAAPAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTG 106
+ E P+ P R G P PPAP A G+ P +++ + +
Sbjct: 342 KKEKSATRPSPSPERSSTG--PEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASP 399
Query: 107 GEGREGAQTREGKMGLPDSARRPRAPRTP----------LRPERPAPG-VPG-------- 147
R ++ E LP S+ +P +P PE P P PG
Sbjct: 400 TRDRSPPKSPE---KLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSS 456
Query: 148 --------GRVAPCTCTSGSPSPRPRRLR---VSGRGSPAQLPPT--------------- 181
GR S +PS R R R + RG PT
Sbjct: 457 PTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRS 516
Query: 182 --YQLLGYHRAPPR----ASP--GGW----NTETLNTEDARRRARSATQAPPL-ALVPAR 228
Q G R+P R SP GW NT+ + RR RS +++P +R
Sbjct: 517 RSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSR 576
Query: 229 SRARPAHLRVRAAGRSRHRVLLALSRESRHLSGARE-RGRAGRYSNRRNLDSLPRKPSTG 287
+ AR R R R R R R SR + AR R R+ + RR+ P + +
Sbjct: 577 TPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSR 636
Query: 288 FAALSRRVNQAIS 300
+ +RR ++ S
Sbjct: 637 SRSPARRSGRSRS 649
Score = 35.0 bits (79), Expect = 0.11
Identities = 50/217 (23%), Positives = 74/217 (34%), Gaps = 24/217 (11%)
Query: 7 TPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDPGV 66
+P+ R + R + +R R SR P R A +G R P
Sbjct: 629 SPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPA- 687
Query: 67 APSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSA 126
RG + RR R+R L G R G+ G S+
Sbjct: 688 -----------RRGRSRSRTPRRGRSRSRSL------VRRGRSHSRTPQRRGRSG--SSS 728
Query: 127 RRPRAPRTPLRPERP--APGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQL 184
R RT R R +P + R++ S S + R+S R S + P +
Sbjct: 729 ERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQ 788
Query: 185 LGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPP 221
+ PPR S G + + RR+RS++ PP
Sbjct: 789 KS--QTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPP 823
Score = 32.0 bits (71), Expect = 0.92
Identities = 69/263 (26%), Positives = 88/263 (33%), Gaps = 41/263 (15%)
Query: 5 PETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDP 64
P T R P ++R + T L P R PLA R P RG
Sbjct: 2012 PVTRRRSRSRTPPAIRRRSRSRTPL---LPRKRSRSRSPLAIRRRSRSRTP--RTARGKR 2066
Query: 65 GVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTG-GEGREGAQTREGKMGLP 123
+ SPPA A G + P TR+ SG+R R +R P
Sbjct: 2067 SLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALNSSRMSCFSRPSMSPTP 2126
Query: 124 -DSARRP------RAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPR-PRRLRVSGRGSP 175
D R P + RTP+ + A G P PR P R S +
Sbjct: 2127 LDRCRSPGMLEPLGSSRTPMSVLQQAGG----------SMMDGPGPRIPDHQRTSVPENH 2176
Query: 176 AQ----LPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRA 231
AQ L T LG R PP S G AR + P+ L+ R+ A
Sbjct: 2177 AQSRIALALTAISLGTARPPPSMSAAG------------LAARMSQVPAPVPLMSLRT-A 2223
Query: 232 RPAHLRVRAAGRSRHRVLLALSR 254
A+L R S + LA +R
Sbjct: 2224 PAANLASRIPAASAAAMNLASAR 2246
Score = 31.6 bits (70), Expect = 1.2
Identities = 54/191 (28%), Positives = 74/191 (38%), Gaps = 29/191 (15%)
Query: 89 RPEPRTRDLSGARGQTTGGEGREGA----QTREGKMGLPDSARRPRAPRTPLRPERPAPG 144
R P TR S +R TT R + R P + RR R+ +P+ R
Sbjct: 1926 RTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSR-- 1983
Query: 145 VPGGRVAPCTCTSGSPSPRP---RRLR-----VSGRGSPAQLPPTYQLLGYHRAP--PRA 194
R +P T P RR R V+ R S ++ PP + R P PR
Sbjct: 1984 ---SRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRK 2040
Query: 195 SPGGWNTETLNTEDARRRARSATQAPPLALVPARS--RARPAHLRVRAAGRSRHRVLLAL 252
+ + + RRR+RS T P RS R+ PA R A+G S R A
Sbjct: 2041 -----RSRSRSPLAIRRRSRSRT---PRTARGKRSLTRSPPAIRRRSASGSSSDRSRSAT 2092
Query: 253 SRESRHLSGAR 263
+R+ SG+R
Sbjct: 2093 PPATRNHSGSR 2103
Score = 31.2 bits (69), Expect = 1.6
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 4/109 (3%)
Query: 36 SRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTR 95
S P+ P +R P AP R G P P P R +++ +
Sbjct: 2567 SLPVQPEVALKRVPSPTPAPKEAVREG----RPPEPTPAKRKRRSSSSSSSSSSSSSSSS 2622
Query: 96 DLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPG 144
S + ++ + + + P+A P P++P PG
Sbjct: 2623 SSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPG 2671
Score = 30.8 bits (68), Expect = 2.0
Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 11/158 (6%)
Query: 68 PSP-PAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSA 126
PSP PAP+++ G P P R + ++ + + S+
Sbjct: 2580 PSPTPAPKEAVREGRPP-----EPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2634
Query: 127 RRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQLLG 186
+ + P+P PG + P + P P RR R + P + L
Sbjct: 2635 SSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRK--PIDSLRDSRSLS 2692
Query: 187 Y---HRAPPRASPGGWNTETLNTEDARRRARSATQAPP 221
Y R P P + ++ ++E RR + P
Sbjct: 2693 YSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSP 2730
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 52.0 bits (123), Expect = 9e-07
Identities = 81/282 (28%), Positives = 100/282 (35%), Gaps = 33/282 (11%)
Query: 12 RPPDPNSVRTVPQPETRLDHN-RPMSRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSP 70
R P P T PQP P S P P+P + +AP G G S
Sbjct: 73 RGPSPAHPWTTPQPGPPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGPTYCAGAGNSR 132
Query: 71 PAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPR 130
+ ++ R P PR L R + G G G ++R + GL + R R
Sbjct: 133 AG--GGLTKYNSAHSSSRVPRPR---LPSQRRGASCGLG-PGPESRAARQGLGGRSARAR 186
Query: 131 APRTPLRPERPAPGV--PGGRVAPCTCTSGSPSPRPR-RLRVSGRGSPAQLPPTYQLLGY 187
R P R RP PG G R A P P R R R +G GS A+ P + G
Sbjct: 187 TRRGPHRTRRPEPGPHHTGARQA-------GPLPGTRGRTRAAGTGSAARGPARHLRGGS 239
Query: 188 HRAPPRA-----SPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARP-AHLRVRAA 241
A A SP G RS+ PPL PAR P A R R
Sbjct: 240 VAAAAAARCLGLSPPG--------RSRLFSPRSSLARPPLRFPPARPALSPSARRRCRVN 291
Query: 242 -GRSRHRVLLALSRESRHL-SGARERGRAGRYSNRRNLDSLP 281
+S R +RH+ S R G R + R LD P
Sbjct: 292 WNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGP 333
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 52.0 bits (123), Expect = 9e-07
Identities = 81/282 (28%), Positives = 100/282 (35%), Gaps = 33/282 (11%)
Query: 12 RPPDPNSVRTVPQPETRLDHN-RPMSRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSP 70
R P P T PQP P S P P+P + +AP G G S
Sbjct: 73 RGPSPAHPWTTPQPGPPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGPTYCAGAGNSR 132
Query: 71 PAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPR 130
+ ++ R P PR L R + G G G ++R + GL + R R
Sbjct: 133 AG--GGLTKYNSAHSSSRVPRPR---LPSQRRGASCGLG-PGPESRAARQGLGGRSARAR 186
Query: 131 APRTPLRPERPAPGV--PGGRVAPCTCTSGSPSPRPR-RLRVSGRGSPAQLPPTYQLLGY 187
R P R RP PG G R A P P R R R +G GS A+ P + G
Sbjct: 187 TRRGPHRTRRPEPGPHHTGARQA-------GPLPGTRGRTRAAGTGSAARGPARHLRGGS 239
Query: 188 HRAPPRA-----SPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARP-AHLRVRAA 241
A A SP G RS+ PPL PAR P A R R
Sbjct: 240 VAAAAAARCLGLSPPG--------RSRLFSPRSSLARPPLRFPPARPALSPSARRRCRVN 291
Query: 242 -GRSRHRVLLALSRESRHL-SGARERGRAGRYSNRRNLDSLP 281
+S R +RH+ S R G R + R LD P
Sbjct: 292 WNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGP 333
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 52.0 bits (123), Expect = 9e-07
Identities = 81/282 (28%), Positives = 100/282 (35%), Gaps = 33/282 (11%)
Query: 12 RPPDPNSVRTVPQPETRLDHN-RPMSRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSP 70
R P P T PQP P S P P+P + +AP G G S
Sbjct: 73 RGPSPAHPWTTPQPGPPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGPTYCAGAGNSR 132
Query: 71 PAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPR 130
+ ++ R P PR L R + G G G ++R + GL + R R
Sbjct: 133 AG--GGLTKYNSAHSSSRVPRPR---LPSQRRGASCGLG-PGPESRAARQGLGGRSARAR 186
Query: 131 APRTPLRPERPAPGV--PGGRVAPCTCTSGSPSPRPR-RLRVSGRGSPAQLPPTYQLLGY 187
R P R RP PG G R A P P R R R +G GS A+ P + G
Sbjct: 187 TRRGPHRTRRPEPGPHHTGARQA-------GPLPGTRGRTRAAGTGSAARGPARHLRGGS 239
Query: 188 HRAPPRA-----SPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARP-AHLRVRAA 241
A A SP G RS+ PPL PAR P A R R
Sbjct: 240 VAAAAAARCLGLSPPG--------RSRLFSPRSSLARPPLRFPPARPALSPSARRRCRVN 291
Query: 242 -GRSRHRVLLALSRESRHL-SGARERGRAGRYSNRRNLDSLP 281
+S R +RH+ S R G R + R LD P
Sbjct: 292 WNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGP 333
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 50.8 bits (120), Expect = 2e-06
Identities = 62/231 (26%), Positives = 79/231 (34%), Gaps = 25/231 (10%)
Query: 2 QIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPG--------- 52
Q PP+ P +PP P+ PQP + P PV PG
Sbjct: 71 QPPPQQPPPQQPP-PHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASS 129
Query: 53 -AAPAGEPRRG-DPGVAPSP-PAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEG 109
A PA P G PG P P P P + GA P P + + Q G
Sbjct: 130 SAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPP---PTPPSSGVPTTPPQAGGPPP 186
Query: 110 REGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRV 169
A G P P P+ P P PG G P G P P P R
Sbjct: 187 PPAAVPGPGPG--PKQGPGPGGPKGGKMPGGPKPGGGPGLSTP----GGHPKP-PHRGGG 239
Query: 170 SGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAP 220
RG PP +Q +H+ PP PGG + E ++ + + S + P
Sbjct: 240 EPRGGRQHHPPYHQQ--HHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRP 288
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 49.7 bits (117), Expect = 4e-06
Identities = 77/267 (28%), Positives = 101/267 (37%), Gaps = 53/267 (19%)
Query: 62 GDPGVAPSPP-APEDSDARGEDGAAA---------ERRPEPRTRDLS-GARGQTTGGEGR 110
G PG A SPP P R D AAA + P PR+ S G G+ GG GR
Sbjct: 326 GRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGR 385
Query: 111 EGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRV---APCTCTSGS------PS 161
+ R + SA PR R R RPAP R A + SGS P
Sbjct: 386 RRRRRRRRRRS-RSSASAPR--RRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPG 442
Query: 162 PRPRRLRVSG-----------RGSPAQLPPTYQLLGYHRAP--------PRASPGGWNTE 202
P P R G R PA P+ G P P P W++
Sbjct: 443 PEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSS- 501
Query: 203 TLNTEDARRRARSATQAPPLALVPARSRA--RPAHLRVRAAGRSRHRVLLA--LSRESRH 258
+ ++ R+RSA + P P+RS + +P GR+RH A R SR
Sbjct: 502 --SRSPSKSRSRSAEKRPH---SPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRS 556
Query: 259 LSGARERGR-AGRYSNRRNLDSLPRKP 284
S R+R R + + R + S ++P
Sbjct: 557 YSPIRKRRRDSPSFMEPRRITSARKRP 583
Score = 44.3 bits (103), Expect = 2e-04
Identities = 71/264 (26%), Positives = 92/264 (34%), Gaps = 41/264 (15%)
Query: 16 PNSVRTVP-QPETRLDHNRPMSRPIFPVPLARRTELPG--AAPAGEPRRGDP-GVAPSPP 71
P S + P +P + R + P P AR E P +AP+ + R G G A
Sbjct: 328 PGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRR 387
Query: 72 APEDSDARGEDGAAAERR----------PEPRTRDLSGARGQTTGGEGR--------EGA 113
R A+A RR P +R LS AR + G GR G+
Sbjct: 388 RRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGS 447
Query: 114 QTREGKMGLPDSARRPRAPRTPLRP--ERPAPGVPGGRVAP-CTCTSGSPSPRPR----- 165
+ G G R PRA RP P+PG G R P +S SP P PR
Sbjct: 448 ERGHGGHGKRAKERPPRA-----RPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSS 502
Query: 166 RLRVSGRGSPAQLPPTYQLLGYHRAPP--RASPGGWNTETLNTEDARRRARSATQAPPLA 223
R R A+ P P R G E R R RS + +P
Sbjct: 503 RSPSKSRSRSAEKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRSYSP--- 559
Query: 224 LVPARSRARPAHLRVRAAGRSRHR 247
+ R R P+ + R +R R
Sbjct: 560 -IRKRRRDSPSFMEPRRITSARKR 582
Score = 42.0 bits (97), Expect = 9e-04
Identities = 63/230 (27%), Positives = 80/230 (34%), Gaps = 47/230 (20%)
Query: 28 RLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSPPAPED-SDARGEDGAAA 86
R + N+ RP TE PG R G + SP SD+R +
Sbjct: 233 RKEKNKEKKRP--------HTESPGR----RSHRHSSGSSHSPSLSSHYSDSRSPSRLSP 280
Query: 87 ERRPEPR---TRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPR---APRTPLRPER 140
+ R E R ++ SG+R + G G+ R G G A R A P +P
Sbjct: 281 KHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSS 340
Query: 141 PAPGV--PGGRVAPCTCTSGSPSPRPRRLRVS-GRGSPAQLPPTYQLLGYHRAPPRASPG 197
P+P V AP G SP PR S GRG RA+ G
Sbjct: 341 PSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGG------------------RAAGG 382
Query: 198 GWNTETLNTEDARRRARSATQAPPLALVPARSRARPAHLRVRAAGRSRHR 247
RRR+RS+ AP R R RP R + RS R
Sbjct: 383 AGRRR--RRRRRRRRSRSSASAP-----RRRGRRRPRPAPPRGSSRSLSR 425
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 49.3 bits (116), Expect = 6e-06
Identities = 46/148 (31%), Positives = 55/148 (37%), Gaps = 5/148 (3%)
Query: 34 PMSRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPR 93
P SR + VPL R PG AP RG G P P + G+ AAA R PR
Sbjct: 80 PGSRRLGRVPLTFREASPGPAPGAPRARGSCGREPGPRRRRAPSSAGKRPAAAARAAPPR 139
Query: 94 TRDLSGARGQTTGGEGREGA----QTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGR 149
R L+ ++ G R R + RR P+ P R P
Sbjct: 140 QRSLARCLPRSVGSCVRPSVGPSLPRRHCRRHCRCHCRRRPLPKPPPLQPRLGSASPPRL 199
Query: 150 VAPCT-CTSGSPSPRPRRLRVSGRGSPA 176
AP + S SP PRR R SPA
Sbjct: 200 AAPLAGSRAPSLSPFPRRCRRRAERSPA 227
Score = 42.0 bits (97), Expect = 9e-04
Identities = 72/236 (30%), Positives = 83/236 (35%), Gaps = 43/236 (18%)
Query: 59 PRRGDPGVAPSPPAPEDSDARGEDGAA-----------AERRPEPRTRDLSGARGQTTGG 107
PR PG P PE +DA G + A +RP R R+ GA G
Sbjct: 11 PRTPAPGCPEVAPQPEGTDAPGPAVCSPTARAPPPILPAPQRPPTRAREWEGA-AWAAGA 69
Query: 108 EGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRL 167
G A + LP S R R P T R P P PG A +C P PR RR
Sbjct: 70 TGVGAA-----LLALPGSRRLGRVPLT-FREASPGP-APGAPRARGSC-GREPGPRRRRA 121
Query: 168 RVSGRGSPA----QLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARR----------RA 213
S PA PP + L R PR S G ++ RR R
Sbjct: 122 PSSAGKRPAAAARAAPPRQRSLA--RCLPR-SVGSCVRPSVGPSLPRRHCRRHCRCHCRR 178
Query: 214 RSATQAPPLALVPARSRARPAHLRVRAAGRSRHRVLLALSRESRHLSGARERGRAG 269
R + PPL P A P L AG SR L R R + ER AG
Sbjct: 179 RPLPKPPPLQ--PRLGSASPPRLAAPLAG-SRAPSLSPFPRRCRRRA---ERSPAG 228
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 49.3 bits (116), Expect = 6e-06
Identities = 51/164 (31%), Positives = 57/164 (34%), Gaps = 13/164 (7%)
Query: 22 VPQPETRLDHNRPMSRPIFPVPLARRTEL---PGAAPAGEPRRGDP--GVAPSPPAPEDS 76
+P + R RP V LARR L PG PR P G P P
Sbjct: 1 MPNKASGRRQGRARGRPHSQVSLARRAPLMFGPGLRDPPPPRPAPPRPGEEPGNRHPPPP 60
Query: 77 DARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPL 136
AR G+ R P P G RG T GR+ A EG +R A R P
Sbjct: 61 AARTHPGSCRARCPSPAA---GGLRGPWTAAPGRQRAD--EGAAAARPERQRVWARRLPG 115
Query: 137 RPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPP 180
PAPG R+ P P RPR G PA P
Sbjct: 116 SAAAPAPGRDALRLPP---PPPPPPERPRLPPAGLAGGPADSAP 156
Score = 30.0 bits (66), Expect = 3.5
Identities = 40/138 (28%), Positives = 42/138 (30%), Gaps = 36/138 (26%)
Query: 128 RPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSP------------------------- 162
RP PR P P P R P +C + PSP
Sbjct: 42 RPAPPRPGEEPGNRHPPPPAARTHPGSCRARCPSPAAGGLRGPWTAAPGRQRADEGAAAA 101
Query: 163 RPRRLRVSGR---GSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQA 219
RP R RV R GS A P L R PP P E A A A
Sbjct: 102 RPERQRVWARRLPGSAAAPAPGRDAL---RLPPPPPP---PPERPRLPPAGLAGGPADSA 155
Query: 220 PPLALVPARSR--ARPAH 235
PP RSR RP H
Sbjct: 156 PPSPAPAPRSRPAPRPGH 173
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 48.9 bits (115), Expect = 7e-06
Identities = 70/251 (27%), Positives = 92/251 (36%), Gaps = 42/251 (16%)
Query: 13 PPDPNSVRTVPQ--PETRLDHNRPMSRPIF---PVPLARRTELPGAAP-----AGEPRRG 62
PP P + T Q P D + P S P P P ++ E+ AP A EP +
Sbjct: 707 PPTPQTTLTPLQESPVISKDQSPPPSPPPSYHPPPPPTKKPEVVVEAPSASETAEEPLQD 766
Query: 63 DPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGL 122
P PPAPE+ D D P P S A + G G +
Sbjct: 767 PNWPPPPPPAPEEQDLSMAD------FPPPEEAFFSVASPEPAGPSGSPELVSSPAASSS 820
Query: 123 PDSA---RRPRAPRTPLRPERPAPGVPG-GRVA------PCTCTSGSPSPRPRRLRVSGR 172
+A + P +P P P PAP G VA P C+ G PR
Sbjct: 821 SATALQIQPPGSPDPPPAPPAPAPASSAPGHVAKLPQKEPVGCSKGGGPPR------EDV 874
Query: 173 GSPAQLPPTYQLLGYHRAPPRASPGGWNTETLN---TEDARRRARSATQAPPLALVPARS 229
G+P P Q++ R +PGG T L + RRA S +P VPA S
Sbjct: 875 GAPLVTPSLLQMV---RLRSVGAPGGAPTPALGPSAPQKPLRRALSGRASP----VPAPS 927
Query: 230 RARPAHLRVRA 240
A +R++A
Sbjct: 928 SGLHAAVRLKA 938
Score = 37.0 bits (84), Expect = 0.028
Identities = 49/197 (24%), Positives = 72/197 (36%), Gaps = 19/197 (9%)
Query: 9 LSLRPPDPNSVRTVPQPETRLD--HNRPMSRPIFPVPLARRTE------LPGAAPAGEPR 60
LS R ++ P P R H R ++ P P+ L + E LP G
Sbjct: 484 LSGRSVSLRKLKRPPPPPRRTHSLHQRGLAVPDGPLGLPPKPERKQQPQLPRPPTTGGSE 543
Query: 61 RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQT--REG 118
G AP PP P +S G + R P R LS + G ++ + G T +G
Sbjct: 544 GA--GAAPCPPNPANSWVPGLSPGGSRRPPRSPERTLSPSSGYSS----QSGTPTLPPKG 597
Query: 119 KMGLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGS---PSPRPRRLRVSGRGSP 175
G P S + + P+ +PG C+S S PS R ++ G
Sbjct: 598 LAGPPASPGKAQPPKPERVTSLRSPGASVSSSLTSLCSSSSDPAPSDRSGPQILTPLGDR 657
Query: 176 AQLPPTYQLLGYHRAPP 192
+PP ++ PP
Sbjct: 658 FVIPPHPKVPAPFSPPP 674
>gi|239757749 PREDICTED: hypothetical protein [Homo sapiens]
Length = 264
Score = 48.5 bits (114), Expect = 9e-06
Identities = 58/200 (29%), Positives = 79/200 (39%), Gaps = 20/200 (10%)
Query: 64 PGVAPSPPAPEDSDARGEDGAAAERR-PEPRTR------DLSGAR-GQTTGGEGREGAQT 115
P V P + E +DA GA A+ P PR R L AR + GG GRE
Sbjct: 5 PAVGSYPWSAEPTDAEKRGGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNA 64
Query: 116 REGKMGLPDSARRPRAPRTPLRPERPAPGVPG------GRVAPCTCTSGSP-SPRPRRLR 168
+ ++ L R AP P R P G G VA C + G P SP R+ R
Sbjct: 65 QGPRLAL---QARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPR 121
Query: 169 VSGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLALVPAR 228
+ R L G+ PP+A+ W +++ A SA P PAR
Sbjct: 122 PAARAPEGALASCGLRAGWAGWPPQAAWRAWGA-SVDAAAPPSEAASAEARLPERSGPAR 180
Query: 229 SRARPAHLRVRAAGRSRHRV 248
R P + ++A G ++ V
Sbjct: 181 -RPGPECVPMKAPGLAQAAV 199
Score = 42.4 bits (98), Expect = 7e-04
Identities = 46/170 (27%), Positives = 57/170 (33%), Gaps = 31/170 (18%)
Query: 53 AAPAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEG--R 110
A P +RG +PPAP R G R +G RG+ TG R
Sbjct: 14 AEPTDAEKRGGARAKATPPAP-----RPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPR 68
Query: 111 EGAQTREGKMGLPDSARR----PRAPRT-------------------PLRPERPAPGVPG 147
Q R P ++RR PR R PLR RPA P
Sbjct: 69 LALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPE 128
Query: 148 GRVAPCTCTSG-SPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASP 196
G +A C +G + P R G A PP+ R P R+ P
Sbjct: 129 GALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGP 178
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 48.1 bits (113), Expect = 1e-05
Identities = 64/227 (28%), Positives = 79/227 (34%), Gaps = 24/227 (10%)
Query: 16 PNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPA---GEPRRGDPGVAPSPPA 72
P V P P + +P+S P P A + P APA E RRG PG + P
Sbjct: 162 PKQVLPQPMPIKKTKPQQPVSEPAAPEQPAPEPKHPARAPARGDSEDRRG-PG-QKTGPD 219
Query: 73 PEDSDARGEDGAAAERRPEPRTRDLS--GARGQTTGGEGREGAQTREGKMGLPDSARRPR 130
P + RG G R E R S +GG G + A RP
Sbjct: 220 PASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGLRRANSVQASRP- 278
Query: 131 APRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRA 190
AP + P P PG PG T P P P +GR P Q P A
Sbjct: 279 APGSVQSPAPPQPGQPG------TPGGSRPGPGP-----AGR-FPDQKPEVAPSDPGTTA 326
Query: 191 PPR----ASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARP 233
PPR GG+ + + +QA A PA +R P
Sbjct: 327 PPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQPAAARQPP 373
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 48.1 bits (113), Expect = 1e-05
Identities = 64/227 (28%), Positives = 79/227 (34%), Gaps = 24/227 (10%)
Query: 16 PNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPA---GEPRRGDPGVAPSPPA 72
P V P P + +P+S P P A + P APA E RRG PG + P
Sbjct: 158 PKQVLPQPMPIKKTKPQQPVSEPAAPEQPAPEPKHPARAPARGDSEDRRG-PG-QKTGPD 215
Query: 73 PEDSDARGEDGAAAERRPEPRTRDLS--GARGQTTGGEGREGAQTREGKMGLPDSARRPR 130
P + RG G R E R S +GG G + A RP
Sbjct: 216 PASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGLRRANSVQASRP- 274
Query: 131 APRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRA 190
AP + P P PG PG T P P P +GR P Q P A
Sbjct: 275 APGSVQSPAPPQPGQPG------TPGGSRPGPGP-----AGR-FPDQKPEVAPSDPGTTA 322
Query: 191 PPR----ASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARP 233
PPR GG+ + + +QA A PA +R P
Sbjct: 323 PPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQPAAARQPP 369
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 47.8 bits (112), Expect = 2e-05
Identities = 40/106 (37%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 50 LPGAAPAGEP-RRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGE 108
LPG P G P +GD GV P + A GE+G A E R E L G +G + G
Sbjct: 653 LPG--PPGLPGMKGDRGVVGEPGPKGEQGASGEEGEAGE-RGELGDIGLPGPKG-SAGNP 708
Query: 109 GREGAQTREGKMGLPDSARRPRAPRTP--LRPERPAPGVPGGRVAP 152
G G + EG GLP PR P P ++ E+ A G+PG + P
Sbjct: 709 GEPGLRGPEGSRGLP-GVEGPRGPPGPRGVQGEQGATGLPGVQGPP 753
Score = 45.8 bits (107), Expect = 6e-05
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 19/133 (14%)
Query: 62 GDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARG-----QTTGGEGREGAQTR 116
G+PG P AP D RG G A + R GARG G G G R
Sbjct: 490 GEPGPQGLPGAPGDQGQRGPPGEAGPK----GDRGAEGARGIPGLPGPKGDTGLPGVDGR 545
Query: 117 EGKMGLPDSARRPRAPRTP----LRPERPAPGVPGGR-VAPCTCTSGSPSPRPRRLRVSG 171
+G G+P + P P P L+ PG+PG + VA ++G+P +P ++ SG
Sbjct: 546 DGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPG-KPGQMGNSG 604
Query: 172 R----GSPAQLPP 180
+ G P ++ P
Sbjct: 605 KPGQQGPPGEVGP 617
Score = 37.7 bits (86), Expect = 0.017
Identities = 42/154 (27%), Positives = 48/154 (31%), Gaps = 34/154 (22%)
Query: 61 RGDPGVAPSPPAPEDSDARGEDGAAAERRP-----------EPRTRDLSGARGQTTGGEG 109
RG PG P P G DG +R P EP G G T G +G
Sbjct: 268 RGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPG-TPGADG 326
Query: 110 REGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPG-----------GRVAPCTCTSG 158
G G +G P P + P R PG PG GRV P G
Sbjct: 327 LTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPV----G 382
Query: 159 SPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPP 192
P R G P P +G+H P
Sbjct: 383 DPGRR-------GPPGPPGPPGPRGTIGFHDGDP 409
Score = 35.0 bits (79), Expect = 0.11
Identities = 34/101 (33%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
Query: 55 PAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAE-----RRPEPRTRDLSGARGQTTGGEG 109
PAGEP G PG P P G DG+ ++ EP + G+RG G G
Sbjct: 306 PAGEP--GKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEP---GVPGSRG--FPGRG 358
Query: 110 REGAQTREGKMGLPDSARRPRAPRTPLRPERPA-PGVPGGR 149
G G GLP R P R P PG PG R
Sbjct: 359 IPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPR 399
Score = 33.9 bits (76), Expect = 0.24
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 49 ELPGAAPAGEP-RRGDPGVAPSPPAP------EDSDARGEDGAAAERRPEPRTRDLSGAR 101
EL P G+P RRG PG P PP P D D + R P + G +
Sbjct: 374 ELGRVGPVGDPGRRGPPG-PPGPPGPRGTIGFHDGDPLCPNACPPGRSGYPGLPGMRGHK 432
Query: 102 GQ--TTGGEGREGAQTREGKMG 121
G G GR+G + EG G
Sbjct: 433 GAKGEIGEPGRQGHKGEEGDQG 454
Score = 30.8 bits (68), Expect = 2.0
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 61 RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPR-TRDLSGARG-------QTTGGEGREG 112
RG PG+ P A +G+ G ER P R L GA G + G GR+G
Sbjct: 816 RGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGPASYGRNGRDG 875
Query: 113 AQTREGKMGLPDSARRPRAPRTP 135
+ G G+P P P P
Sbjct: 876 ERGPPGVAGIPGVPGPPGPPGLP 898
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 47.8 bits (112), Expect = 2e-05
Identities = 40/106 (37%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 50 LPGAAPAGEP-RRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGE 108
LPG P G P +GD GV P + A GE+G A E R E L G +G + G
Sbjct: 410 LPG--PPGLPGMKGDRGVVGEPGPKGEQGASGEEGEAGE-RGELGDIGLPGPKG-SAGNP 465
Query: 109 GREGAQTREGKMGLPDSARRPRAPRTP--LRPERPAPGVPGGRVAP 152
G G + EG GLP PR P P ++ E+ A G+PG + P
Sbjct: 466 GEPGLRGPEGSRGLP-GVEGPRGPPGPRGVQGEQGATGLPGVQGPP 510
Score = 45.8 bits (107), Expect = 6e-05
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 19/133 (14%)
Query: 62 GDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARG-----QTTGGEGREGAQTR 116
G+PG P AP D RG G A + R GARG G G G R
Sbjct: 247 GEPGPQGLPGAPGDQGQRGPPGEAGPK----GDRGAEGARGIPGLPGPKGDTGLPGVDGR 302
Query: 117 EGKMGLPDSARRPRAPRTP----LRPERPAPGVPGGR-VAPCTCTSGSPSPRPRRLRVSG 171
+G G+P + P P P L+ PG+PG + VA ++G+P +P ++ SG
Sbjct: 303 DGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPG-KPGQMGNSG 361
Query: 172 R----GSPAQLPP 180
+ G P ++ P
Sbjct: 362 KPGQQGPPGEVGP 374
Score = 38.1 bits (87), Expect = 0.013
Identities = 42/155 (27%), Positives = 49/155 (31%), Gaps = 34/155 (21%)
Query: 60 RRGDPGVAPSPPAPEDSDARGEDGAAAERRP-----------EPRTRDLSGARGQTTGGE 108
+RG PG P P G DG +R P EP G G T G +
Sbjct: 24 QRGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPG-TPGAD 82
Query: 109 GREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPG-----------GRVAPCTCTS 157
G G G +G P P + P R PG PG GRV P
Sbjct: 83 GLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPV---- 138
Query: 158 GSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPP 192
G P R G P P +G+H P
Sbjct: 139 GDPGRR-------GPPGPPGPPGPRGTIGFHDGDP 166
Score = 35.0 bits (79), Expect = 0.11
Identities = 34/101 (33%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
Query: 55 PAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAE-----RRPEPRTRDLSGARGQTTGGEG 109
PAGEP G PG P P G DG+ ++ EP + G+RG G G
Sbjct: 63 PAGEP--GKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEP---GVPGSRG--FPGRG 115
Query: 110 REGAQTREGKMGLPDSARRPRAPRTPLRPERPA-PGVPGGR 149
G G GLP R P R P PG PG R
Sbjct: 116 IPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPR 156
Score = 33.9 bits (76), Expect = 0.24
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 49 ELPGAAPAGEP-RRGDPGVAPSPPAP------EDSDARGEDGAAAERRPEPRTRDLSGAR 101
EL P G+P RRG PG P PP P D D + R P + G +
Sbjct: 131 ELGRVGPVGDPGRRGPPG-PPGPPGPRGTIGFHDGDPLCPNACPPGRSGYPGLPGMRGHK 189
Query: 102 GQ--TTGGEGREGAQTREGKMG 121
G G GR+G + EG G
Sbjct: 190 GAKGEIGEPGRQGHKGEEGDQG 211
Score = 30.8 bits (68), Expect = 2.0
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 61 RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPR-TRDLSGARG-------QTTGGEGREG 112
RG PG+ P A +G+ G ER P R L GA G + G GR+G
Sbjct: 573 RGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGPASYGRNGRDG 632
Query: 113 AQTREGKMGLPDSARRPRAPRTP 135
+ G G+P P P P
Sbjct: 633 ERGPPGVAGIPGVPGPPGPPGLP 655
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 47.4 bits (111), Expect = 2e-05
Identities = 42/117 (35%), Positives = 49/117 (41%), Gaps = 14/117 (11%)
Query: 55 PAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQT--TGGEGREG 112
PAG+P GD G +P P + RG G E P P GA GQ GG+G G
Sbjct: 772 PAGQP--GDKGEGGAPGLPGIAGPRGSPGERGETGP-PGPAGFPGAPGQNGEPGGKGERG 828
Query: 113 AQTREGKMGLPDSARRP--RAPRTPLRP-----ERPAPGVPGGRVAPCTCTSGSPSP 162
A +G+ G P A P P P P ER +PG PG P G P P
Sbjct: 829 APGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFP--GARGLPGP 883
Score = 46.2 bits (108), Expect = 5e-05
Identities = 44/137 (32%), Positives = 53/137 (38%), Gaps = 19/137 (13%)
Query: 43 PLARRTELPGAAPAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARG 102
P + + + PAG G PG A S AP RG+ G ER + G RG
Sbjct: 1057 PAGKSGDRGESGPAGPA--GAPGPAGSRGAPGPQGPRGDKGETGER----GAAGIKGHRG 1110
Query: 103 --QTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPG--GRVAPCTCTSG 158
G G G ++G +G P P PR P+ P P PG G G P G
Sbjct: 1111 FPGNPGAPGSPGPAGQQGAIGSPG----PAGPRGPVGPSGP-PGKDGTSGHPGPI----G 1161
Query: 159 SPSPRPRRLRVSGRGSP 175
P PR R GSP
Sbjct: 1162 PPGPRGNRGERGSEGSP 1178
Score = 42.7 bits (99), Expect = 5e-04
Identities = 52/156 (33%), Positives = 61/156 (39%), Gaps = 27/156 (17%)
Query: 50 LPG--AAPAGEPRRGDPGVAPSPPAPEDSDARGEDGA-AAERRPEPRTRDLSGARGQTTG 106
LPG AP RG PG P P + ARG DGA ++ +P P G G T G
Sbjct: 289 LPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGP-----PGPPG-TAG 342
Query: 107 GEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRR 166
G GA+ G G P S P +R PG G A G P P
Sbjct: 343 FPGSPGAKGEVGPAGSPGSNGAP--------GQRGEPGPQGHAGA-----QGPPGPPGIN 389
Query: 167 LRVSGRG--SPAQLPPTYQLLGYHRAPPRASPGGWN 200
G+G PA +P L+G R PP P G N
Sbjct: 390 GSPGGKGEMGPAGIPGAPGLMG-ARGPP--GPAGAN 422
Score = 40.8 bits (94), Expect = 0.002
Identities = 46/152 (30%), Positives = 61/152 (40%), Gaps = 26/152 (17%)
Query: 13 PPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSPPA 72
PP P + P + + P P P + R PG A A G PG+
Sbjct: 382 PPGPPGINGSPGGKGEMG---PAGIPGAPGLMGARGP-PGPAGAN----GAPGLRGGAGE 433
Query: 73 PEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAP 132
P + A+GE G E R E + GA+G+ +G++G+ G GLP +A AP
Sbjct: 434 PGKNGAKGEPGPRGE-RGEAGIPGVPGAKGE----DGKDGSPGEPGANGLPGAAGERGAP 488
Query: 133 --RTPLRP-----------ERPAPGVPGGRVA 151
R P P ER APG G R A
Sbjct: 489 GFRGPAGPNGIPGEKGPAGERGAPGPAGPRGA 520
Score = 38.9 bits (89), Expect = 0.007
Identities = 50/155 (32%), Positives = 60/155 (38%), Gaps = 24/155 (15%)
Query: 50 LPG-AAPAGEP----RRGDPGVAPSPPAPEDSD---ARGEDGAAAERRP--EPRTRDLSG 99
LPG A P G P G PG A P AP + +GE GA E+ P G
Sbjct: 787 LPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPG 846
Query: 100 ARGQT-----TGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAP-GVPG--GRVA 151
G G +G G+ G G P + P P + P P P G PG G
Sbjct: 847 GSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPG 906
Query: 152 PC--TCTSGSP---SPRPRRLRVSGRGSP-AQLPP 180
P T GSP P+ + +GSP AQ PP
Sbjct: 907 PAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPP 941
Score = 38.9 bits (89), Expect = 0.007
Identities = 40/135 (29%), Positives = 50/135 (37%), Gaps = 13/135 (9%)
Query: 56 AGEPRRGDPGVAPSPPAPE-DSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQ 114
AG P P +P P + +S G +G + ER P P + L G G T G GR+G
Sbjct: 959 AGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGP-PGPQGLPGLAG-TAGEPGRDGNP 1016
Query: 115 TREGKMGLPDSAR---------RPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPR 165
+G G S P AP P P P P P G+ SG P
Sbjct: 1017 GSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGD-RGESGPAGPAGA 1075
Query: 166 RLRVSGRGSPAQLPP 180
RG+P P
Sbjct: 1076 PGPAGSRGAPGPQGP 1090
Score = 37.7 bits (86), Expect = 0.017
Identities = 37/116 (31%), Positives = 45/116 (38%), Gaps = 25/116 (21%)
Query: 55 PAGEPRRGDPGVAPSPP-APEDSDARGEDGAAAERRPEPRTRDLSGARG----------- 102
P GEP + P P PP A S G+DG + R P R L G G
Sbjct: 202 PPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESG-RPGRPGERGLPGPPGIKGPAGIPGFP 260
Query: 103 ---------QTTGGEGREGAQTREGKMGLP--DSARRPRAPRTPLRPERPAPGVPG 147
G +G GA +G+ GLP + A P PR ER PG+PG
Sbjct: 261 GMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPR-GAPGERGRPGLPG 315
Score = 37.0 bits (84), Expect = 0.028
Identities = 40/134 (29%), Positives = 48/134 (35%), Gaps = 28/134 (20%)
Query: 47 RTELPGAAPAGEPRRGDPGVAPSPPAPE-DSDARGEDGAA-------------AERRPEP 92
R E A PAG P AP P P D GE GAA A P P
Sbjct: 1064 RGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGP 1123
Query: 93 RTRD-------LSGARGQT--TGGEGREGAQTREGKMGLPDSARRPRAPR----TPLRPE 139
+ +G RG +G G++G G +G P R R R +P P
Sbjct: 1124 AGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIG-PPGPRGNRGERGSEGSPGHPG 1182
Query: 140 RPAPGVPGGRVAPC 153
+P P P G PC
Sbjct: 1183 QPGPPGPPGAPGPC 1196
Score = 36.6 bits (83), Expect = 0.037
Identities = 43/124 (34%), Positives = 50/124 (40%), Gaps = 27/124 (21%)
Query: 50 LPGAAPAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAER-RPEPRTRDLSGARGQTTGGE 108
LPGAA GE RG PG P P + GE G A ER P P +G RG G
Sbjct: 478 LPGAA--GE--RGAPGFR-GPAGP--NGIPGEKGPAGERGAPGP-----AGPRG-AAGEP 524
Query: 109 GREGAQTREGKMGLPDSARRPRAPRTPL---------RPERPAPGVPGGRVAPCTCTSGS 159
GR+G G G+P S P + P RP P P P G+ G
Sbjct: 525 GRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPG----VMGF 580
Query: 160 PSPR 163
P P+
Sbjct: 581 PGPK 584
Score = 35.0 bits (79), Expect = 0.11
Identities = 38/133 (28%), Positives = 51/133 (38%), Gaps = 28/133 (21%)
Query: 50 LPGA--APAGEPRRGDPGVA-----PSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARG 102
+PG+ P + + G PG P PP P S RG+ G P P+ D + +
Sbjct: 538 MPGSPGGPGSDGKPGPPGSQGESGRPGPPGP--SGPRGQPGVMGF--PGPKGNDGAPGKN 593
Query: 103 QTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSP 162
GG G G Q GK G P+ P P P PGG +G P P
Sbjct: 594 GERGGPGGPGPQGPPGKNG----ETGPQGP--------PGPTGPGGDKG----DTGPPGP 637
Query: 163 RPRRLRVSGRGSP 175
+ + + G G P
Sbjct: 638 QGLQ-GLPGTGGP 649
Score = 33.9 bits (76), Expect = 0.24
Identities = 57/220 (25%), Positives = 75/220 (34%), Gaps = 17/220 (7%)
Query: 55 PAGEP-RRGDPGVAPSPPAPEDSDARG--EDGAAAERRPEPRTRDLSGARGQTTGG-EGR 110
P G P R GDPG+ P +P G E + P+ G GG G
Sbjct: 113 PPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGY 172
Query: 111 EGAQTREGKMGLPDSARRPRAPRTP---LRPERPAPGVPGGRVAPCTCTSGS-PSPRPRR 166
G G G P ++ P +P +P P P P G P S P+ +
Sbjct: 173 PGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGE 232
Query: 167 LRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPPLA--- 223
GR LP + G P PG + D R + T AP L
Sbjct: 233 SGRPGRPGERGLPGPPGIKG-----PAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGEN 287
Query: 224 LVPARSRARPAHLRVRAAGRSRHRVLLALSRESRHLSGAR 263
+P + A P + R A R R L + +R GAR
Sbjct: 288 GLPGENGA-PGPMGPRGAPGERGRPGLPGAAGARGNDGAR 326
Score = 30.8 bits (68), Expect = 2.0
Identities = 44/149 (29%), Positives = 55/149 (36%), Gaps = 28/149 (18%)
Query: 68 PSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGE-GREGAQTREGKMGLPDSA 126
P+P P GE A + P TR +G Q G+ G G R G G+P
Sbjct: 75 PNPEIPF-----GECCAVCPQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQP 129
Query: 127 RRPRAP-------RTPLRPERPAP---------GVPGGRVAPCTCTSGSPSPRPRRLRVS 170
P +P P P+ +P GV G +A +G P P P S
Sbjct: 130 GSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGP-PGPPGTS 188
Query: 171 GR-GSPAQLPPTYQLLGYHRAPPRASPGG 198
G GSP P YQ G P +A P G
Sbjct: 189 GHPGSPGS--PGYQ--GPPGEPGQAGPSG 213
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 47.4 bits (111), Expect = 2e-05
Identities = 75/280 (26%), Positives = 93/280 (33%), Gaps = 53/280 (18%)
Query: 1 MQIPPETPLSL----------RPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTEL 50
+++PP P +L RPP + P + RP S+P P A
Sbjct: 151 LELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQ 210
Query: 51 PGAA------PAGEPRRG---------------------DPGVAPSPPAPEDSDARGEDG 83
PG PA E R G P +P+PPAPE + R G
Sbjct: 211 PGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRA-PG 269
Query: 84 AAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAP 143
+ A RRP PR + G T G R G R G P ++ R R R
Sbjct: 270 STAGRRPRPREPQAAEESGCATVGL-RRGDCDRAGSSQPPATSGNGERCRFCRRRRRRG- 327
Query: 144 GVPGGRVAPCTCTSGSPSPRPRR---------LRV-SGRGSPAQLPPTYQLLGYHRAPPR 193
GG T G SP RR LR SG GS L T H A R
Sbjct: 328 --GGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQR 385
Query: 194 ASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARP 233
GG N ++ R RS P + +RP
Sbjct: 386 FG-GGRNLKSNWMSTTRTPRRSGASGPKMVADQTSGISRP 424
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 47.4 bits (111), Expect = 2e-05
Identities = 75/280 (26%), Positives = 93/280 (33%), Gaps = 53/280 (18%)
Query: 1 MQIPPETPLSL----------RPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTEL 50
+++PP P +L RPP + P + RP S+P P A
Sbjct: 151 LELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQ 210
Query: 51 PGAA------PAGEPRRG---------------------DPGVAPSPPAPEDSDARGEDG 83
PG PA E R G P +P+PPAPE + R G
Sbjct: 211 PGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRA-PG 269
Query: 84 AAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAP 143
+ A RRP PR + G T G R G R G P ++ R R R
Sbjct: 270 STAGRRPRPREPQAAEESGCATVGL-RRGDCDRAGSSQPPATSGNGERCRFCRRRRRRG- 327
Query: 144 GVPGGRVAPCTCTSGSPSPRPRR---------LRV-SGRGSPAQLPPTYQLLGYHRAPPR 193
GG T G SP RR LR SG GS L T H A R
Sbjct: 328 --GGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQR 385
Query: 194 ASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARP 233
GG N ++ R RS P + +RP
Sbjct: 386 FG-GGRNLKSNWMSTTRTPRRSGASGPKMVADQTSGISRP 424
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 47.4 bits (111), Expect = 2e-05
Identities = 75/280 (26%), Positives = 93/280 (33%), Gaps = 53/280 (18%)
Query: 1 MQIPPETPLSL----------RPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTEL 50
+++PP P +L RPP + P + RP S+P P A
Sbjct: 151 LELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQ 210
Query: 51 PGAA------PAGEPRRG---------------------DPGVAPSPPAPEDSDARGEDG 83
PG PA E R G P +P+PPAPE + R G
Sbjct: 211 PGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRA-PG 269
Query: 84 AAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAP 143
+ A RRP PR + G T G R G R G P ++ R R R
Sbjct: 270 STAGRRPRPREPQAAEESGCATVGL-RRGDCDRAGSSQPPATSGNGERCRFCRRRRRRG- 327
Query: 144 GVPGGRVAPCTCTSGSPSPRPRR---------LRV-SGRGSPAQLPPTYQLLGYHRAPPR 193
GG T G SP RR LR SG GS L T H A R
Sbjct: 328 --GGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQR 385
Query: 194 ASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRARP 233
GG N ++ R RS P + +RP
Sbjct: 386 FG-GGRNLKSNWMSTTRTPRRSGASGPKMVADQTSGISRP 424
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 47.4 bits (111), Expect = 2e-05
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 60 RRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGK 119
++ PG+ P + AR R P+P+ + GA G T + + AQ G
Sbjct: 562 QQAPPGLGPIL----EDQARPSQNLLQLRPPQPQPQGTVGASGATGQPQPQGTAQPPPGA 617
Query: 120 -MGLPDSARRPRAPRTPLRPERPA--PGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPA 176
G P +A P P LRP+ P P + + P +G P P+ + G+PA
Sbjct: 618 PQGPPGAASGPPPPGPILRPQNPGANPQLRSLLLNPPPPQTGVPPPQASLHHLQPPGAPA 677
Query: 177 QLPPTYQLLGYHR-APPRASP 196
LPP +Q LG + PP P
Sbjct: 678 LLPPPHQGLGQPQLGPPLLHP 698
Score = 28.9 bits (63), Expect = 7.8
Identities = 50/184 (27%), Positives = 65/184 (35%), Gaps = 46/184 (25%)
Query: 4 PPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGD 63
P + L LRPP P QP+ + + +P + + P G P+ G
Sbjct: 578 PSQNLLQLRPPQP-------QPQGTVGASGATGQP--------QPQGTAQPPPGAPQ-GP 621
Query: 64 PGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLP 123
PG A PP P GA P+ R+ L+ QT G+P
Sbjct: 622 PGAASGPPPPGPILRPQNPGA----NPQLRSLLLNPPPPQT----------------GVP 661
Query: 124 DSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGS-PAQLPPTY 182
P+A L+P PG P + P G P P L S PAQLPP
Sbjct: 662 P----PQASLHHLQP----PGAP-ALLPPPHQGLGQPQLGPPLLHPPPAQSWPAQLPPRA 712
Query: 183 QLLG 186
L G
Sbjct: 713 PLPG 716
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 47.0 bits (110), Expect = 3e-05
Identities = 49/179 (27%), Positives = 70/179 (39%), Gaps = 23/179 (12%)
Query: 5 PETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDP 64
P P R P P R P P ++ P+ R P P +R A+P P+R
Sbjct: 573 PTPPPRRRTPSPPPRRRSPSPRR---YSPPIQRRYSPSPPPKRRT---ASPPPPPKRR-- 624
Query: 65 GVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQ----TREGKM 120
+PSPP + P+ R+ ++ R + + R+G+ TRE +
Sbjct: 625 -ASPSPPPKRR--------VSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARS 675
Query: 121 GLPDSARRPRA-PRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQL 178
P+ P PR P P P G +P S SPS RP R RVS P ++
Sbjct: 676 PQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIR-RVSRTPEPKKI 733
Score = 42.7 bits (99), Expect = 5e-04
Identities = 70/292 (23%), Positives = 95/292 (32%), Gaps = 26/292 (8%)
Query: 4 PPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGD 63
PP TP PP T PQ R +R P RT G +R
Sbjct: 403 PPATP----PPKTRHSPT-PQQSNRTRKSRVSVSP-------GRTSGKVTKHKGTEKRES 450
Query: 64 PGVAPSPPAPEDSDARGEDG---AAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
P AP P E S++ + G AAA+ + R + + G R +
Sbjct: 451 PSPAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRS 510
Query: 121 GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSPAQLP- 179
+ + R +P R P+P +P SPSP P R R S SPA P
Sbjct: 511 HVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRS--PSPAPPPR 568
Query: 180 ----PTYQLLGYHRAPP----RASPGGWNTETLNTEDARRRARSATQAPPLALVPARSRA 231
PT +PP SP ++ + T +PP S +
Sbjct: 569 RRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 628
Query: 232 RPAHLRVRAAGRSRHRVLLALSRESRHLSGARERGRAGRYSNRRNLDSLPRK 283
P RV + + R R S LS +G + S R P K
Sbjct: 629 PPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNK 680
Score = 40.0 bits (92), Expect = 0.003
Identities = 63/261 (24%), Positives = 91/261 (34%), Gaps = 38/261 (14%)
Query: 12 RPPDPNSVRTVPQPETRLDHNRP---MSRPIFPVPLARRTELPGAAPAGEPRRGDPGV-- 66
R P P + + E + H+R ++ P P + E P + +P V
Sbjct: 178 RSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQE 237
Query: 67 ---------APSP-PAPEDSDARGEDGAAAERRPE---PRTRDLSGARGQT-------TG 106
P P P PE + E + E+ E PR+R S +R +T T
Sbjct: 238 ATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTR 297
Query: 107 GEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRR 166
R +++R S RR +PR P R P P S SP R RR
Sbjct: 298 PRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPP-------PPRHRRSRSPVRRRRR 350
Query: 167 LRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETL--NTEDARRRARSATQAPPLAL 224
S GS + + + P R S T L + RRR R + A P
Sbjct: 351 SSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATP--- 407
Query: 225 VPARSRARPAHLRVRAAGRSR 245
P ++R P + +SR
Sbjct: 408 -PPKTRHSPTPQQSNRTRKSR 427
Score = 35.0 bits (79), Expect = 0.11
Identities = 56/242 (23%), Positives = 76/242 (31%), Gaps = 38/242 (15%)
Query: 74 EDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPR 133
ED D R ++ + R R+R + ++ R RE K S R R
Sbjct: 149 EDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSR 208
Query: 134 TPL--------RPERPAPGVPGGRVAPCTCTSGS---------PSPRPR----------- 165
+P PE P P V + TS S P P P+
Sbjct: 209 SPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKE 268
Query: 166 ----RLRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAPP 221
+ R R T H P R + + + RR S + P
Sbjct: 269 KEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTP 328
Query: 222 LALVPARSRARPAHLRVRAAGRSRHRVLLALSRESRHLSGARERGRAGRYSNRRNLDSLP 281
P R P H R R+ R R R +LS S S +R R + R + S P
Sbjct: 329 ----PRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTS--SPP 382
Query: 282 RK 283
RK
Sbjct: 383 RK 384
Score = 28.9 bits (63), Expect = 7.8
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 14 PDPNSVRTVPQPETRLDHNRPMSR--PIFPVPLARRTELPGAAPAGEPRRGDPGVAPSPP 71
P P SVR V + P ++ P P P+ ++ +PA P + PSP
Sbjct: 739 PSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPA-VPVKKAKSPTPSPS 797
Query: 72 APEDSDARGEDGAAAERRPEPRTRD 96
P +SD G +++ + +D
Sbjct: 798 PPRNSDQEGGGKKKKKKKDKKHKKD 822
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 46.6 bits (109), Expect = 4e-05
Identities = 57/208 (27%), Positives = 70/208 (33%), Gaps = 35/208 (16%)
Query: 52 GAAPAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGRE 111
GA PA P G PG AP PP R G +RP P S R G
Sbjct: 72 GAGPAA-PAEGAPGAAPEPPPA----GRARPGGGGPQRPGPP----SPRRPLVPAGPAPP 122
Query: 112 GAQTR---EGKMG----LPDSARRPRAPR-TPLRPERPA-PGVPGGRVAPCTCTSGSPSP 162
A+ R EG G +P +A P P P +PA P R P P P
Sbjct: 123 AAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGP 182
Query: 163 RPRRLRVSGRGSPAQLPPTYQLLGYHRAP-----------------PRASPGGWNTETLN 205
P + +G G+ L + LL H A P+ + G +T
Sbjct: 183 GPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPP 242
Query: 206 TEDARRRARSATQAPPLALVPARSRARP 233
A A +PP A PA A P
Sbjct: 243 FVGAAAPPAPAAPSPPAAPAPAAPAAAP 270
Score = 34.7 bits (78), Expect = 0.14
Identities = 51/184 (27%), Positives = 63/184 (34%), Gaps = 25/184 (13%)
Query: 1 MQIPPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPR 60
+Q PP + PP P + P P P P LAR P G P
Sbjct: 238 IQTPPFVGAAA-PPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLAR--------PPGHP- 287
Query: 61 RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
G P AP+ P P + G GAA P P +G GQ G G A G
Sbjct: 288 AGPPTAAPAVPPPAAAQNGGSAGAAP--APAPAAGGPAGVSGQP--GPGAAAAAPAPGVK 343
Query: 121 GLPDSARR-----PRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSP 175
+S +R P A +T L PA + P T P P + G+P
Sbjct: 344 A--ESPKRVVQAAPPAAQT-LAASGPASTAASMVIGP---TMQGALPSPAAVPPPAPGTP 397
Query: 176 AQLP 179
LP
Sbjct: 398 TGLP 401
Score = 33.5 bits (75), Expect = 0.31
Identities = 47/171 (27%), Positives = 57/171 (33%), Gaps = 28/171 (16%)
Query: 5 PETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDP 64
P P + PP P P P T RP P P A P AA G P
Sbjct: 263 PAAPAAAPPPPP------PAPATLA---RPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAP 313
Query: 65 GVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGAR--------GQTTGGEGREG---- 112
AP+ P + GAAA P P + S R QT G
Sbjct: 314 APAPAAGGPAGVSGQPGPGAAA-AAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAAS 372
Query: 113 ---AQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGRVA--PCTCTSG 158
T +G + P +A P AP TP + A G ++ P TSG
Sbjct: 373 MVIGPTMQGALPSP-AAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSG 422
Score = 33.1 bits (74), Expect = 0.41
Identities = 44/205 (21%), Positives = 63/205 (30%), Gaps = 20/205 (9%)
Query: 34 PMSRPIFPVPLARRTELPGAAPAGEPRRGDPGVAPSPPAPEDSDARGEDGAAAERRP--- 90
P+ +P P + + GAA P P AP+P AP + A RP
Sbjct: 227 PLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGH 286
Query: 91 -------EPRTRDLSGARGQTTGGEGREGAQTREGKMGL---PDSARRPRAPRTPLRPER 140
P + A+ + G A G G+ P AP ++ E
Sbjct: 287 PAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAES 346
Query: 141 PAPGVPGGRVAPCTCTSGSPSPRPRRLRV-----SGRGSPAQLPPTYQLLGYHRAPPRAS 195
P V A T + P+ + + SPA +PP G P+ +
Sbjct: 347 PKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAP--GTPTGLPKGA 404
Query: 196 PGGWNTETLNTEDARRRARSATQAP 220
G T A AT P
Sbjct: 405 AGAVTQSLSRTPTATTSGIRATLTP 429
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 46.6 bits (109), Expect = 4e-05
Identities = 61/210 (29%), Positives = 74/210 (35%), Gaps = 34/210 (16%)
Query: 13 PPDPNSV--RTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGE-PRRGDPGVAPS 69
PP P + T PET + P +P P+P R P G+ P RG P
Sbjct: 385 PPTPKTAWAETSRPPET--EPGPPAPKP--PLPPPHRGPAGNWGPPGDYPDRGGPPC--K 438
Query: 70 PPAPEDSD---------ARGEDGAAAER---RPEPRTRDLSGARGQTTGGEGREGAQTRE 117
PPAPED D + E A ER R E R + R E + +
Sbjct: 439 PPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACA----EKLKRLD 494
Query: 118 GKMGLPDSARRPRAPRTPLRPERPA--PGVPGGRVAPCTCTSGSPSPRPRRLRVSGRGSP 175
K G PD + P P PA P VP AP +P P + P
Sbjct: 495 EKFGAPDKRLKAEPAAPPAAPSTPAPPPAVPKELPAP-----PAPPPASAPTPETEPEEP 549
Query: 176 AQLPPTYQ--LLGYHRAPPRASPGGWNTET 203
AQ PP G AP S GG + T
Sbjct: 550 AQAPPAQSTPTPGVAAAPTLVSGGGSTSST 579
Score = 40.4 bits (93), Expect = 0.003
Identities = 53/193 (27%), Positives = 67/193 (34%), Gaps = 50/193 (25%)
Query: 62 GDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGE---------GREG 112
G P P+P S+ R E G+ E P+ R + RG TG E +E
Sbjct: 1071 GGPNHPPAPRGRTASETRSE-GSEYEEIPKRRRQ-----RGSETGSETHESDLAPSDKEA 1124
Query: 113 AQTREGKMGLPDSARRPRAPRTPLRPERPAP--------------GVP------GGRVAP 152
+EG + + P AP P P PAP GVP GGR P
Sbjct: 1125 PTPKEGTL-----TQVPLAPPPPGAPPSPAPARFTARGGRVFTPRGVPSRRGRGGGRPPP 1179
Query: 153 CTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASP-------GGWNTETLN 205
C SP P + + LPP+ + L P SP GG N +
Sbjct: 1180 QVCPGWSP---PAKSLAPKKPPTGPLPPSKEPLKEKLIPGPLSPVARGGSNGGSNVGMED 1236
Query: 206 TEDARRRARSATQ 218
E RRR Q
Sbjct: 1237 GERPRRRRHGRAQ 1249
Score = 38.9 bits (89), Expect = 0.007
Identities = 49/180 (27%), Positives = 63/180 (35%), Gaps = 35/180 (19%)
Query: 38 PIFPVPLARRTELPGAAPAGEPRRG-------DPGVAPSP-PAPEDSDARGEDGAAAERR 89
P P P PG G P +PG P P P D A+ + +
Sbjct: 826 PPVPPPPPYLASYPGFPENGAPGPPISRFPLEEPGPRPLPWPPGSDEVAKIQTPPPKKEP 885
Query: 90 PEPRTRDLSG-------ARGQTTGGEG-----REG-AQTREGKMGLPDSARRPRAPRTPL 136
P+ T L+G ARG +GG+G RE +TR G P S+RR P P
Sbjct: 886 PKEETAQLTGPEAGRKPARGVGSGGQGPPPPRRESRTETRWGPR--PGSSRRGIPPEEPG 943
Query: 137 RPER-------PAPGVPGGRVAPCTCTSGS-----PSPRPRRLRVSGRGSPAQLPPTYQL 184
P R P P + P G P P P ++ G P + PP L
Sbjct: 944 APPRRAGPIKKPPPPTKVEELPPKPLEQGDETPKPPKPDPLKITKGKLGGPKETPPNGNL 1003
Score = 36.6 bits (83), Expect = 0.037
Identities = 64/266 (24%), Positives = 88/266 (33%), Gaps = 51/266 (19%)
Query: 5 PETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPG---------AAP 55
P TP+ PP P ++ VP P+ P + ++P L R +P P
Sbjct: 673 PPTPVPPSPPQPVTLGAVPAPQA----PPPPPKALYPGALGRPPPMPPMNFDPRWMMIPP 728
Query: 56 AGEPR--RG-------DPGVAPSPPAP-EDSDARGEDGAAAERRPEPRTRDLS------- 98
+PR +G PGV PS P E SD+ G +R R+
Sbjct: 729 YVDPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPFDRHAPAMLRERGTPPVDPK 788
Query: 99 ----GARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPA--PGVPGGRVAP 152
G T E R D R P P P A PG P
Sbjct: 789 LAWVGDVFTATPAEPRPLTSPLRQAADEDDKGMRSETPPVPPPPPYLASYPGFP------ 842
Query: 153 CTCTSGSPSPRPRRLRVSGRG-SPAQLPP-TYQLLGYHRAPPRASPGGWNTETLNTEDAR 210
+G+P P R + G P PP + ++ PP+ P T L +A
Sbjct: 843 ---ENGAPGPPISRFPLEEPGPRPLPWPPGSDEVAKIQTPPPKKEPPKEETAQLTGPEAG 899
Query: 211 RR----ARSATQAPPLALVPARSRAR 232
R+ S Q PP +R+ R
Sbjct: 900 RKPARGVGSGGQGPPPPRRESRTETR 925
Score = 34.3 bits (77), Expect = 0.18
Identities = 53/226 (23%), Positives = 70/226 (30%), Gaps = 47/226 (20%)
Query: 4 PPETPLSLRPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGD 63
PP P L P + P PET + P A+ T PG A A G
Sbjct: 521 PPAVPKELPAPPAPPPASAPTPETEPEEPAQ-------APPAQSTPTPGVAAAPTLVSGG 573
Query: 64 PGVAP--------SPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTG-GEGREGAQ 114
+ SP P+ G + E P P T + + G G R+
Sbjct: 574 GSTSSTSSGSFEASPVEPQLPSKEGPE--PPEEVPPPTTPPVPKVEPKGDGIGPTRQPPS 631
Query: 115 TREG----KMGLPDSARRPR--------------------APRTPLRPERPAPGVPGGRV 150
G + LP +R + AP TP+ P P P G
Sbjct: 632 QGLGYPKYQKSLPPRFQRQQQEQLLKQQQQHQWQQHQQGSAPPTPVPPSPPQPVTLGAVP 691
Query: 151 APCTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASP 196
AP +P P P+ L G P +PP + PP P
Sbjct: 692 AP-----QAPPPPPKALYPGALGRPPPMPPMNFDPRWMMIPPYVDP 732
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 46.2 bits (108), Expect = 5e-05
Identities = 84/323 (26%), Positives = 111/323 (34%), Gaps = 82/323 (25%)
Query: 45 ARRTELP----GAAPAGEPRRGDPGVAPSPPAPEDSDARGED----GAAAERRPEPRTRD 96
AR+ +LP G P P RG G++ +P P + AR + + R PEP
Sbjct: 105 ARQAQLPRPVSGVRP---PPRGRVGLSQAPGRPLGACARAKGIRLVNPSPPRPPEPIPAS 161
Query: 97 LSGARGQTTGGEG-------REGAQTREGKMGLPDSARRPRAPRTPLRPERP-------- 141
+ G T G ++G + E +P +R AP P RP P
Sbjct: 162 AAVTSGLTARGPNTSATPGPQKGRGSAERTNHIPKDKQRVAAPPPPERPRVPFCRGSSGL 221
Query: 142 ----APGVPGGRVAPCTCT----------SGSPSPRPRRLRVSGRG-------------S 174
P GGR T T S PS RP S S
Sbjct: 222 SVPTPPEHAGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSSSHSAPLPFFWSPLRNPS 281
Query: 175 PAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAP--------PLALVP 226
P P +L +PPRA GG ++ + D++ R A AP P A P
Sbjct: 282 PRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKHRTLPAPPAPTAWPAAGAPGAPNP 341
Query: 227 ARSRARPAHLRVRAAGRSRHRVLLALSRESRHLSGARERGRAGRYSNRRNLDSLPRKPST 286
A SR P + + R R R + ARE GR G P +
Sbjct: 342 AESRRGPGPAQGPPSRRDEPR---------RVVIAARECGREG-----------SELPPS 381
Query: 287 GFAALSRRVNQAISC-LGTESAL 308
G RR + + SC G ES L
Sbjct: 382 GEETPGRRKSPSQSCKKGGESIL 404
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 46.2 bits (108), Expect = 5e-05
Identities = 84/323 (26%), Positives = 111/323 (34%), Gaps = 82/323 (25%)
Query: 45 ARRTELP----GAAPAGEPRRGDPGVAPSPPAPEDSDARGED----GAAAERRPEPRTRD 96
AR+ +LP G P P RG G++ +P P + AR + + R PEP
Sbjct: 105 ARQAQLPRPVSGVRP---PPRGRVGLSQAPGRPLGACARAKGIRLVNPSPPRPPEPIPAS 161
Query: 97 LSGARGQTTGGEG-------REGAQTREGKMGLPDSARRPRAPRTPLRPERP-------- 141
+ G T G ++G + E +P +R AP P RP P
Sbjct: 162 AAVTSGLTARGPNTSATPGPQKGRGSAERTNHIPKDKQRVAAPPPPERPRVPFCRGSSGL 221
Query: 142 ----APGVPGGRVAPCTCT----------SGSPSPRPRRLRVSGRG-------------S 174
P GGR T T S PS RP S S
Sbjct: 222 SVPTPPEHAGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSSSHSAPLPFFWSPLRNPS 281
Query: 175 PAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARRRARSATQAP--------PLALVP 226
P P +L +PPRA GG ++ + D++ R A AP P A P
Sbjct: 282 PRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKHRTLPAPPAPTAWPAAGAPGAPNP 341
Query: 227 ARSRARPAHLRVRAAGRSRHRVLLALSRESRHLSGARERGRAGRYSNRRNLDSLPRKPST 286
A SR P + + R R R + ARE GR G P +
Sbjct: 342 AESRRGPGPAQGPPSRRDEPR---------RVVIAARECGREG-----------SELPPS 381
Query: 287 GFAALSRRVNQAISC-LGTESAL 308
G RR + + SC G ES L
Sbjct: 382 GEETPGRRKSPSQSCKKGGESIL 404
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 46.2 bits (108), Expect = 5e-05
Identities = 46/144 (31%), Positives = 56/144 (38%), Gaps = 22/144 (15%)
Query: 12 RPPDPNSVRTVPQPETRLDHNRPMSRPIFPVPLARRTELPGAAPAGEPRRGDP---GVAP 68
R P T P E P + P + PL R LP P P P GV+P
Sbjct: 313 RAGTPPQQPTAPSSEWPGPQRSPGTGPRWTAPLPRPAPLPAKRPGDSPASKRPRPGGVSP 372
Query: 69 ---SPPAPED----SDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKMG 121
PP E+ S+A GE G R P+ L G R Q G+GREG EG
Sbjct: 373 EARDPPKGENPLCSSEAAGETGPTQVRGPDA----LGGGRLQ---GKGREGKAPGEGVSP 425
Query: 122 LPDSARRPRAPRTPLRPERPAPGV 145
P R + PR+ RP G+
Sbjct: 426 RPAPPRLGKPPRS-----RPPQGL 444
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,672,317
Number of Sequences: 37866
Number of extensions: 1319417
Number of successful extensions: 9982
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 1291
Number of HSP's that attempted gapping in prelim test: 6782
Number of HSP's gapped (non-prelim): 3605
length of query: 371
length of database: 18,247,518
effective HSP length: 104
effective length of query: 267
effective length of database: 14,309,454
effective search space: 3820624218
effective search space used: 3820624218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.