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Search of human proteins with 239745558
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745558 PREDICTED: hypothetical protein XP_002344162 [Homo
sapiens]
(210 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756579 PREDICTED: hypothetical protein [Homo sapiens] 440 e-124
gi|239751071 PREDICTED: hypothetical protein XP_002347706 [Homo ... 440 e-124
gi|169165985 PREDICTED: hypothetical protein [Homo sapiens] 440 e-124
gi|239745558 PREDICTED: hypothetical protein XP_002344162 [Homo ... 440 e-124
gi|169165598 PREDICTED: hypothetical protein [Homo sapiens] 439 e-123
gi|239742122 PREDICTED: hypothetical protein isoform 2 [Homo sap... 439 e-123
gi|169165184 PREDICTED: hypothetical protein isoform 1 [Homo sap... 439 e-123
gi|19924099 synapsin I isoform Ia [Homo sapiens] 42 4e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 42 4e-04
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 42 5e-04
gi|5730045 solute carrier family 16, member 2 [Homo sapiens] 41 8e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 40 0.001
gi|58218966 hypothetical protein LOC339201 [Homo sapiens] 40 0.001
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 40 0.002
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 40 0.002
gi|19924103 synapsin II isoform IIa [Homo sapiens] 39 0.004
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 38 0.007
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 38 0.007
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 37 0.012
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 37 0.012
gi|37622910 cholinergic receptor, muscarinic 1 [Homo sapiens] 37 0.016
gi|157388929 epsin 3 [Homo sapiens] 37 0.016
gi|169171580 PREDICTED: hypothetical protein [Homo sapiens] 36 0.021
gi|113419324 PREDICTED: hypothetical protein [Homo sapiens] 36 0.021
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 36 0.021
gi|239747677 PREDICTED: hypothetical protein [Homo sapiens] 36 0.021
gi|113418864 PREDICTED: hypothetical protein [Homo sapiens] 36 0.021
gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo ... 36 0.021
gi|239509076 PREDICTED: hypothetical protein [Homo sapiens] 36 0.021
gi|14993776 skeletal myosin light chain kinase [Homo sapiens] 36 0.021
>gi|239756579 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 440 bits (1131), Expect = e-124
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA
Sbjct: 1 MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
Query: 61 HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY
Sbjct: 61 HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
Query: 121 PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC
Sbjct: 121 PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
Query: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
RMMSSVATLRKASSTLLESLADVSMAHRMS
Sbjct: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
>gi|239751071 PREDICTED: hypothetical protein XP_002347706 [Homo
sapiens]
Length = 210
Score = 440 bits (1131), Expect = e-124
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA
Sbjct: 1 MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
Query: 61 HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY
Sbjct: 61 HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
Query: 121 PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC
Sbjct: 121 PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
Query: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
RMMSSVATLRKASSTLLESLADVSMAHRMS
Sbjct: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
>gi|169165985 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 440 bits (1131), Expect = e-124
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA
Sbjct: 1 MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
Query: 61 HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY
Sbjct: 61 HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
Query: 121 PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC
Sbjct: 121 PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
Query: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
RMMSSVATLRKASSTLLESLADVSMAHRMS
Sbjct: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
>gi|239745558 PREDICTED: hypothetical protein XP_002344162 [Homo
sapiens]
Length = 210
Score = 440 bits (1131), Expect = e-124
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA
Sbjct: 1 MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
Query: 61 HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY
Sbjct: 61 HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
Query: 121 PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC
Sbjct: 121 PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
Query: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
RMMSSVATLRKASSTLLESLADVSMAHRMS
Sbjct: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
>gi|169165598 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 439 bits (1128), Expect = e-123
Identities = 209/210 (99%), Positives = 210/210 (100%)
Query: 1 MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA
Sbjct: 1 MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
Query: 61 HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY
Sbjct: 61 HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
Query: 121 PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
PGGLALEGWAWQAGESKEVG+PQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC
Sbjct: 121 PGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
Query: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
RMMSSVATLRKASSTLLESLADVSMAHRMS
Sbjct: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
>gi|239742122 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 210
Score = 439 bits (1128), Expect = e-123
Identities = 209/210 (99%), Positives = 210/210 (100%)
Query: 1 MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA
Sbjct: 1 MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
Query: 61 HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY
Sbjct: 61 HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
Query: 121 PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
PGGLALEGWAWQAGESKEVG+PQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC
Sbjct: 121 PGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
Query: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
RMMSSVATLRKASSTLLESLADVSMAHRMS
Sbjct: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
>gi|169165184 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 210
Score = 439 bits (1128), Expect = e-123
Identities = 209/210 (99%), Positives = 210/210 (100%)
Query: 1 MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA
Sbjct: 1 MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
Query: 61 HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY
Sbjct: 61 HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
Query: 121 PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
PGGLALEGWAWQAGESKEVG+PQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC
Sbjct: 121 PGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
Query: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
RMMSSVATLRKASSTLLESLADVSMAHRMS
Sbjct: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 42.0 bits (97), Expect = 4e-04
Identities = 46/150 (30%), Positives = 53/150 (35%), Gaps = 25/150 (16%)
Query: 32 PQVKQTHERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGG----PAAGWQGGPPG 87
P Q H PAG L PT A G G P AG G PP
Sbjct: 486 PPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPA 545
Query: 88 Y--PASPS-SRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEG-------------WAW 131
PASPS R+A PQ + S +P S PGG +G A
Sbjct: 546 ARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQAS 605
Query: 132 QAGESKEVG-----SPQSAGPAPGQHPQPQ 156
QAG G P+ +GP P P+PQ
Sbjct: 606 QAGPVPRTGPPTTQQPRPSGPGPAGRPKPQ 635
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 42.0 bits (97), Expect = 4e-04
Identities = 46/150 (30%), Positives = 53/150 (35%), Gaps = 25/150 (16%)
Query: 32 PQVKQTHERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGG----PAAGWQGGPPG 87
P Q H PAG L PT A G G P AG G PP
Sbjct: 486 PPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPA 545
Query: 88 Y--PASPS-SRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEG-------------WAW 131
PASPS R+A PQ + S +P S PGG +G A
Sbjct: 546 ARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQAS 605
Query: 132 QAGESKEVG-----SPQSAGPAPGQHPQPQ 156
QAG G P+ +GP P P+PQ
Sbjct: 606 QAGPVPRTGPPTTQQPRPSGPGPAGRPKPQ 635
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 41.6 bits (96), Expect = 5e-04
Identities = 39/128 (30%), Positives = 47/128 (36%), Gaps = 11/128 (8%)
Query: 32 PQVKQTHERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPAS 91
PQ + RS P G QG PP + P + G P G G P P
Sbjct: 226 PQGDNKSQSARSPP-GKPQG---PPPQGGNQPQGPPPPPGKPQGPPPQG--GNKPQGPPP 279
Query: 92 PSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPAPGQ 151
P + PQ G + +SSR+ PG P G +G G G PQ P G
Sbjct: 280 PGKPQGPPPQGGSKSRSSRSPPG-----KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 334
Query: 152 HPQPQPSP 159
PQ P P
Sbjct: 335 KPQGPPPP 342
Score = 40.4 bits (93), Expect = 0.001
Identities = 36/128 (28%), Positives = 44/128 (34%), Gaps = 10/128 (7%)
Query: 32 PQVKQTHERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPAS 91
P R P G QG PP + P + G P G G P P
Sbjct: 163 PPQGDNKSRSSRSPPGKPQG---PPPQGGNQPQGPPPPPGKPQGPPPQG--GNKPQGPPP 217
Query: 92 PSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPAPGQ 151
P + PQ ++ QS+R+ PG P G +G G G PQ P G
Sbjct: 218 PGKPQGPPPQGDNKSQSARSPPG-----KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 272
Query: 152 HPQPQPSP 159
PQ P P
Sbjct: 273 KPQGPPPP 280
Score = 39.7 bits (91), Expect = 0.002
Identities = 36/128 (28%), Positives = 45/128 (35%), Gaps = 10/128 (7%)
Query: 32 PQVKQTHERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPAS 91
P + R P G QG PP + P + G P G G P P
Sbjct: 101 PPPQGDKSRSPRSPPGKPQG---PPPQGGNQPQGPPPPPGKPQGPPPQG--GNKPQGPPP 155
Query: 92 PSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPAPGQ 151
P + PQ ++ +SSR+ PG P G +G G G PQ P G
Sbjct: 156 PGKPQGPPPQGDNKSRSSRSPPG-----KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 210
Query: 152 HPQPQPSP 159
PQ P P
Sbjct: 211 KPQGPPPP 218
Score = 34.7 bits (78), Expect = 0.060
Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 85 PPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQS 144
PPG P P P G + +S R+ PG P G +G G G PQ
Sbjct: 94 PPGKPQGP-------PPQGDKSRSPRSPPG-----KPQGPPPQGGNQPQGPPPPPGKPQG 141
Query: 145 AGPAPGQHPQPQPSP 159
P G PQ P P
Sbjct: 142 PPPQGGNKPQGPPPP 156
Score = 32.3 bits (72), Expect = 0.30
Identities = 31/120 (25%), Positives = 42/120 (35%), Gaps = 20/120 (16%)
Query: 40 RKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASI 99
R P G QG PP + P + G P G G P P P +
Sbjct: 295 RSSRSPPGKPQG---PPPQGGNQPQGPPPPPGKPQGPPPQG--GNKPQGPPPPGKPQGPP 349
Query: 100 PQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSP 159
PQ G + +S+R+ PG Q +E +PQ P G +PQ +P
Sbjct: 350 PQGGSKSRSARSPPG---------------KPQGPPQQEGNNPQGPPPPAGGNPQQPQAP 394
Score = 30.0 bits (66), Expect = 1.5
Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 15/77 (19%)
Query: 83 GGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSP 142
G P G P PQ G++ Q + PG P G +G G G P
Sbjct: 34 GNPQGAP----------PQGGNKPQGPPSPPG-----KPQGPPPQGGNQPQGPPPPPGKP 78
Query: 143 QSAGPAPGQHPQPQPSP 159
Q P G PQ P P
Sbjct: 79 QGPPPQGGNKPQGPPPP 95
>gi|5730045 solute carrier family 16, member 2 [Homo sapiens]
Length = 613
Score = 40.8 bits (94), Expect = 8e-04
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 72 EDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAW 131
E GGG + PP +S SSR PQ G SS + P + + +G W
Sbjct: 32 EPGGGGSGSGSSSPPS-SSSCSSRNKYQPQSGSSGPSSHSPPAAMALQSQASEEAKG-PW 89
Query: 132 QAGESKE---VGSPQSAG-----------PAPGQHPQPQPSPM 160
Q + ++ VGSP+ P P PQP+P P+
Sbjct: 90 QEADQEQQEPVGSPEPESEPEPEPEPEPVPVPPPEPQPEPQPL 132
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 40.4 bits (93), Expect = 0.001
Identities = 34/120 (28%), Positives = 46/120 (38%), Gaps = 8/120 (6%)
Query: 42 RSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGP-PGYPASPSSRRASIP 100
R EP G G PP +P + E G A G G P P PA P ++
Sbjct: 802 RGEPGPPGPAGFAGPPGADG----QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVG 857
Query: 101 QPGHR-MQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSP 159
PG + + S PG +PG G +G + G P AG G+ P+ + P
Sbjct: 858 APGAKGARGSAGPPGATG--FPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGP 915
Score = 38.5 bits (88), Expect = 0.004
Identities = 46/144 (31%), Positives = 54/144 (37%), Gaps = 22/144 (15%)
Query: 29 NLLPQVKQTHERKR----SEPAGMGQGG---LLAPPTVAHTGGFR--PVLECEDGGGPAA 79
N PQ+ ++ K S P MG G L PP GF+ P E G
Sbjct: 158 NFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPM 217
Query: 80 GWQG--GPPGY---------PASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGL-ALE 127
G +G GPPG P P R PQ + + PG R GL +
Sbjct: 218 GPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAK 277
Query: 128 GWAWQAGESKEVGSPQSAGPAPGQ 151
G A AG E GSP G APGQ
Sbjct: 278 GDAGPAGPKGEPGSPGENG-APGQ 300
Score = 35.0 bits (79), Expect = 0.046
Identities = 40/132 (30%), Positives = 49/132 (37%), Gaps = 16/132 (12%)
Query: 42 RSEPAGMGQGGLLAPPTVAHTGGFRPVLECE----DGGGPAAGWQGGPPGYPASPSSR-R 96
R E G+ G+ PP A G + D G P A G PG P R
Sbjct: 676 RGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGA 735
Query: 97 ASIPQP-GHR----MQSSRASPGCCSCR-YPGGLALEGWAWQAGESKEVGSPQSAGP--- 147
A +P P G R + + SPG R G + G A G+ E G AGP
Sbjct: 736 AGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGA 795
Query: 148 --APGQHPQPQP 157
APG +P P
Sbjct: 796 RGAPGDRGEPGP 807
Score = 34.3 bits (77), Expect = 0.079
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 75 GGPAAGWQGGPPGYPASPSSRRASIPQPGHR----MQSSRASPGCCSCRYPGGLALEGWA 130
G P GPPG PA +R + +PG R PG S +PG +G A
Sbjct: 449 GEPGPVGVQGPPG-PAGEEGKRGARGEPGPTGLPGPPGERGGPG--SRGFPGA---DGVA 502
Query: 131 WQAGESKEVGSPQSAGP--APGQHPQP 155
G + E GSP AGP +PG+ +P
Sbjct: 503 GPKGPAGERGSPGPAGPKGSPGEAGRP 529
Score = 32.7 bits (73), Expect = 0.23
Identities = 34/111 (30%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Query: 39 ERKRSEPAG-MGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRA 97
ER PAG G G P A G + + G P + GPPG PA R
Sbjct: 510 ERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSP--GSPGPDGKTGPPG-PAGQDGRPG 566
Query: 98 SIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPA 148
PG R Q+ +PG G +AGE G P + GPA
Sbjct: 567 PPGPPGARGQAGVMG-------FPGPKGAAGEPGKAGERGVPGPPGAVGPA 610
Score = 32.7 bits (73), Expect = 0.23
Identities = 31/108 (28%), Positives = 38/108 (35%), Gaps = 3/108 (2%)
Query: 42 RSEPAGMGQGGLLAPPTVAHTGGFR-PVLECEDGGGPAAGWQGGPPGYPASPSSRRASIP 100
+ EP G G PP A G P+ G A GPPG P + +
Sbjct: 826 KGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAA-GRVG 884
Query: 101 QPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPA 148
PG + P + + GG G AG EVG P GPA
Sbjct: 885 PPGPSGNAGPPGPPGPAGK-EGGKGPRGETGPAGRPGEVGPPGPPGPA 931
Score = 32.3 bits (72), Expect = 0.30
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 75 GGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCR-YPGGLALEGWAWQA 133
G P Q G PG P P +R + + + PG R PG G A +
Sbjct: 554 GPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKD 613
Query: 134 GESKEVGSPQSAGPAPGQHPQ-PQPSP 159
GE+ G P AGPA + Q P SP
Sbjct: 614 GEAGAQGPPGPAGPAGERGEQGPAGSP 640
Score = 32.0 bits (71), Expect = 0.39
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 75 GGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAG 134
G P + GP G PA P+ R + PG R + P + G +G G
Sbjct: 776 GAPGDKGESGPSG-PAGPTGARGA---PGDRGEPGPPGPA----GFAGPPGADGQPGAKG 827
Query: 135 ESKEVGSPQSAGPAPGQHPQPQPSPM 160
E + G+ AGP P P P+
Sbjct: 828 EPGDAGAKGDAGPPGPAGPAGPPGPI 853
Score = 32.0 bits (71), Expect = 0.39
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 79 AGWQG--GPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCR-YPGGLALEGWAWQAGE 135
+G QG GPPG P AS P S +PG PG + G + G+
Sbjct: 1114 SGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGD 1173
Query: 136 SKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWM 167
+ VG P GP PG P P FS++
Sbjct: 1174 AGPVGPPGPPGP-PG---PPGPPSAGFDFSFL 1201
Score = 31.6 bits (70), Expect = 0.51
Identities = 35/140 (25%), Positives = 50/140 (35%), Gaps = 25/140 (17%)
Query: 32 PQVKQTHERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPAS 91
P K+ + R E G+ G + PP G + G P A G PG P
Sbjct: 900 PAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAG--------EKGSPGADGPAGAPGTPGP 951
Query: 92 P--SSRRASIPQPGHRMQSS------------RASPGCCSCRY--PGGLALEGWAWQAGE 135
+ +R + PG R + + P S PG + G A GE
Sbjct: 952 QGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE 1011
Query: 136 SKEVGSPQSAGPAPGQHPQP 155
S G+P + G +PG+ P
Sbjct: 1012 SGREGAPGAEG-SPGRDGSP 1030
Score = 31.2 bits (69), Expect = 0.67
Identities = 32/108 (29%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 41 KRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIP 100
+R P MG GL PP E G A G +G P G SP ++
Sbjct: 993 ERGPPGPMGPPGLAGPPG-------------ESGREGAPGAEGSP-GRDGSPGAK----- 1033
Query: 101 QPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPA 148
G R ++ A P PG G AG+S + G AGPA
Sbjct: 1034 --GDRGETGPAGPPGA----PGAPGAPGPVGPAGKSGDRGETGPAGPA 1075
Score = 29.3 bits (64), Expect = 2.5
Identities = 32/113 (28%), Positives = 37/113 (32%), Gaps = 20/113 (17%)
Query: 41 KRSEPAGMGQGGLLAPPTVAHTG-----GFRPVLECEDGGGPAAGWQGGPPGYPASPSSR 95
+R P G GL P T G GF + + GPA GP G P SP
Sbjct: 243 ERGPPGPQGARGL--PGTAGLPGMKGHRGFSGLDGAKGDAGPA-----GPKGEPGSPGEN 295
Query: 96 RASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPA 148
A + R PG PG G G + G P GPA
Sbjct: 296 GAPGQMGPRGLPGERGRPGA-----PGPAGARG---NDGATGAAGPPGPTGPA 340
Score = 28.9 bits (63), Expect = 3.3
Identities = 35/115 (30%), Positives = 43/115 (37%), Gaps = 17/115 (14%)
Query: 45 PAGMGQGGLLAPPTVAHTGGFRPV-LECEDGGGPAAGWQG-----GPPGYPASPSSRRAS 98
P MG GL P G P DG AAG G GPPG+P + ++ +
Sbjct: 298 PGQMGPRGL--PGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEA 355
Query: 99 IPQ---PGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPAPG 150
PQ Q R PG PG G A G + G+ + A APG
Sbjct: 356 GPQGPRGSEGPQGVRGEPG-----PPGPAGAAGPAGNPGADGQPGA-KGANGAPG 404
>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
Length = 193
Score = 40.0 bits (92), Expect = 0.001
Identities = 38/124 (30%), Positives = 48/124 (38%), Gaps = 15/124 (12%)
Query: 43 SEPAGMGQGGLLAP--PTVAHTGGFRPVLECEDGGGPAAG--WQGGPPGYPASPSSRRAS 98
S P QG L AP P V G P G PAA W GPP + R A+
Sbjct: 2 SGPPSAPQGALAAPRSPAVRRKGLQAP--SWGSPGRPAAHSPWACGPPHWGPQRGPRNAA 59
Query: 99 IPQPGHRMQ-SSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQP 157
+PG R + R + C +C P G L + G+PQ P+PQ
Sbjct: 60 AARPGPRSRWHKRCAAACGACARPPGHQL--------QPPGAGAPQPGVACSYLGPRPQR 111
Query: 158 SPMS 161
+P S
Sbjct: 112 TPCS 115
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 39.7 bits (91), Expect = 0.002
Identities = 34/121 (28%), Positives = 39/121 (32%), Gaps = 8/121 (6%)
Query: 45 PAGMGQ----GGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIP 100
P G G G AP H G PV G GP G P SR A P
Sbjct: 1028 PGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGP 1087
Query: 101 QPGHRMQSSRASPGCCSCR----YPGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQ 156
Q + G + +PG G AG+ +GSP AGP P
Sbjct: 1088 QGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGP 1147
Query: 157 P 157
P
Sbjct: 1148 P 1148
Score = 38.5 bits (88), Expect = 0.004
Identities = 36/126 (28%), Positives = 44/126 (34%), Gaps = 14/126 (11%)
Query: 42 RSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQ 101
+ EP G G G+ P G P+ G P +GG PG P R +
Sbjct: 743 KGEPGGPGADGV--PGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGS---- 796
Query: 102 PGHRMQSSRASPGCCSCR-----YPGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQ 156
PG R ++ P PGG G GE E G P AGP G P
Sbjct: 797 PGERGETGPPGPAGFPGAPGQNGEPGGKGERG---APGEKGEGGPPGVAGPPGGSGPAGP 853
Query: 157 PSPMSL 162
P P +
Sbjct: 854 PGPQGV 859
Score = 38.1 bits (87), Expect = 0.005
Identities = 34/117 (29%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 49 GQGGLLAPPTVAHTGGFRPVLECEDGG-----GPAAGWQGGPPGYPASPSSRRASIPQPG 103
G+ G PP A G P E GG P +GGPPG P + P
Sbjct: 798 GERGETGPPGPAGFPG-APGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGP 856
Query: 104 HRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGP--APGQHPQPQPS 158
++ R SPG PG G G G+P GP +PG+ P P+
Sbjct: 857 QGVKGERGSPG-----GPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPA 908
Score = 37.7 bits (86), Expect = 0.007
Identities = 40/123 (32%), Positives = 48/123 (39%), Gaps = 16/123 (13%)
Query: 41 KRSEPAGMGQGGLLAPPTVAHT-GGFRPV-------LECEDG--GGPAAGWQGGPPGYPA 90
+R P G+GG PP VA GG P ++ E G GGP A G G P
Sbjct: 826 ERGAPGEKGEGG---PPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPG 882
Query: 91 SPSSRRASIPQPGHRMQSSRASPGCC-SCRYPGGLALEGWAWQAGESKEVGSPQSAGP-- 147
P S P PG + PG + G AG+ E GSP + GP
Sbjct: 883 PPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPG 942
Query: 148 APG 150
APG
Sbjct: 943 APG 945
Score = 33.1 bits (74), Expect = 0.18
Identities = 32/112 (28%), Positives = 38/112 (33%), Gaps = 11/112 (9%)
Query: 44 EPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPG 103
+P G G PP G + GP GP G P P + +PG
Sbjct: 928 QPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPG--MPGPRGSPG-PQGVKGESGKPG 984
Query: 104 HRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQP 155
S P PG L G A AGE G+P S G PG+ P
Sbjct: 985 ANGLSGERGP-------PGPQGLPGLAGTAGEPGRDGNPGSDG-LPGRDGSP 1028
Score = 32.0 bits (71), Expect = 0.39
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 45 PAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQG--GPPGYPASPSSRRASIPQP 102
P G G G+ P GG P + + G + G G GPPG P+ P + + P
Sbjct: 530 PGGPGMRGMPGSP-----GG--PGSDGKPGPPGSQGESGRPGPPG-PSGPRGQPGVMGFP 581
Query: 103 GHRMQSSRASPGCCSCRY-PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMS 161
G + + +PG R PGG +G + GE+ G P GP + P P
Sbjct: 582 GPK--GNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQG 639
Query: 162 L 162
L
Sbjct: 640 L 640
Score = 29.6 bits (65), Expect = 1.9
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
Query: 73 DGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY-----PGGLALE 127
D G P + G PG P P S P P +S P S +Y G+A+
Sbjct: 110 DPGPPGIPGRNGDPGIPGQPGS--PGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVG 167
Query: 128 GWAWQAGESKEVGSPQSAGPAPGQHPQPQPSP 159
G A G + G P P HP SP
Sbjct: 168 GLAGYPGPAGPPGPP--GPPGTSGHPGSPGSP 197
Score = 28.9 bits (63), Expect = 3.3
Identities = 29/106 (27%), Positives = 35/106 (33%), Gaps = 19/106 (17%)
Query: 41 KRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIP 100
K EP G G AP G D G P + GPPG +P R + P
Sbjct: 655 KPGEPGPKGDAG--APGAPGGKG---------DAGAPG---ERGPPGLAGAPGLRGGAGP 700
Query: 101 QPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAG 146
+ + PG PG G GE +GSP G
Sbjct: 701 PGPEGGKGAAGPPG-----PPGAAGTPGLQGMPGERGGLGSPGPKG 741
Score = 28.5 bits (62), Expect = 4.3
Identities = 25/106 (23%), Positives = 33/106 (31%), Gaps = 25/106 (23%)
Query: 41 KRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIP 100
+R EP G G PP G P + GP G P +P
Sbjct: 367 QRGEPGPQGHAGAQGPPGPPGING-----------SPGGKGEMGPAGIPGAPG------- 408
Query: 101 QPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAG 146
+ +R PG G L G A + G++ G P G
Sbjct: 409 -----LMGARGPPGPAGAN--GAPGLRGGAGEPGKNGAKGEPGPRG 447
Score = 28.5 bits (62), Expect = 4.3
Identities = 33/122 (27%), Positives = 40/122 (32%), Gaps = 14/122 (11%)
Query: 41 KRSEPAGMGQGGLLAPPTVAHTGGFRPVL-----ECEDGGGPAAGWQGGP--PGYPASPS 93
K P G+ G PP + G V+ + DG G +GGP PG P
Sbjct: 550 KPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPG 609
Query: 94 SRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGP-----A 148
+ PQ G PG L+G G E G P GP A
Sbjct: 610 KNGETGPQGPPGPTGPGGDKG--DTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGA 667
Query: 149 PG 150
PG
Sbjct: 668 PG 669
Score = 27.7 bits (60), Expect = 7.4
Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 12/100 (12%)
Query: 72 EDGGGPAAGWQG-----GPPGYPASP--SSRRASIPQPGHRMQSSRASPGCCSCR----- 119
E G AAG +G G PG P SP + ++ +I PG P +
Sbjct: 1096 ETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSG 1155
Query: 120 YPGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSP 159
+PG + G GE GSP G P P P
Sbjct: 1156 HPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGP 1195
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 39.7 bits (91), Expect = 0.002
Identities = 36/122 (29%), Positives = 42/122 (34%), Gaps = 13/122 (10%)
Query: 44 EPAGMGQGGLLAPP----TVAHTGGFRPVLECEDGGGPAAGWQGGPPGYP--ASPSSRRA 97
EP G GL P V G P D G P Q GP G P A + +R
Sbjct: 934 EPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRG 993
Query: 98 SIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQP 157
+ PG R R PG PG G G + + G P GP P +P
Sbjct: 994 IVGMPGQR--GERGMPGL-----PGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEP 1046
Query: 158 SP 159
P
Sbjct: 1047 GP 1048
Score = 33.5 bits (75), Expect = 0.13
Identities = 30/113 (26%), Positives = 40/113 (35%), Gaps = 23/113 (20%)
Query: 49 GQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGY--PASPSSRRASIPQPGHRM 106
G+ G + P + + GF G P + GP G P P +R PG
Sbjct: 363 GKPGPMGPLGIPGSSGFP--------GNPGMKGEAGPTGARGPEGPQGQRGETGPPG--- 411
Query: 107 QSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSP 159
SPG PG + +G G GSP ++GP P P P
Sbjct: 412 --PVGSPGL-----PGAIGTDG---TPGAKGPTGSPGTSGPPGSAGPPGSPGP 454
Score = 30.8 bits (68), Expect = 0.87
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
Query: 75 GGPAAGWQGGPPGYPASP---------SSRRASIPQP---GHRMQSSRASPGCCSCRYPG 122
G P GPPG+P+ P S++ A + + G ++ S G R P
Sbjct: 165 GVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQ 224
Query: 123 GL-ALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQP 157
GL +G A G E G P GP + P+ P
Sbjct: 225 GLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPP 260
Score = 30.4 bits (67), Expect = 1.1
Identities = 42/143 (29%), Positives = 52/143 (36%), Gaps = 33/143 (23%)
Query: 44 EPAGMGQGGLLAPPTVAHTGGFRPV-LECEDGG-GPAAGWQGGPPGYPASPS------SR 95
E +G+G L P +V G P L+ + GG GP GPPG P P SR
Sbjct: 200 EKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPT-----GPPGEPGDPGPMGPIGSR 254
Query: 96 RASIP--QPGHRMQSSR----------ASPGCCSCRYPGGLALEGWAWQAGESK------ 137
P +PG + R SPG +PG L G G
Sbjct: 255 GPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARG--FPGAPGLPGLKGHRGHKGLEGPKG 312
Query: 138 EVGSPQSAGPAPGQHPQPQPSPM 160
EVG+P S G A P P+
Sbjct: 313 EVGAPGSKGEAGPTGPMGAMGPL 335
Score = 28.5 bits (62), Expect = 4.3
Identities = 35/135 (25%), Positives = 48/135 (35%), Gaps = 27/135 (20%)
Query: 41 KRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQG-----GPPGYPASPSS- 94
++ EP G GL+ PP G R E+G A G+ G G PG P
Sbjct: 814 EKGEP---GPRGLVGPPGSRGNPGSRG----ENGPTGAVGFAGPQGPDGQPGVKGEPGEP 866
Query: 95 -RRASIPQPGHRMQSSRASP-----------GCCSCRYPGGLALEGWAWQAGESKEVGSP 142
++ PG + + P G + PG G A + G G+P
Sbjct: 867 GQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAP 926
Query: 143 QSAGP--APGQHPQP 155
AGP PG+ P
Sbjct: 927 GPAGPLGEPGKEGPP 941
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 38.5 bits (88), Expect = 0.004
Identities = 50/186 (26%), Positives = 67/186 (36%), Gaps = 13/186 (6%)
Query: 17 EPRALDTSLESSNLLPQVKQTHERKRSEP--AGMGQGGLLAPPTVAHTGGFRPVLECEDG 74
E R L T L S + + +T P Q G L P + T RP +
Sbjct: 401 EDRQLITELVISKMNQLLSRTPALSPQRPLTTQQPQSGTLKDPDSSKTPPQRPPPQ---- 456
Query: 75 GGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSC-RYPGGLALEGWAWQA 133
GGP PPG P R P P SS +S S + PGG G A +
Sbjct: 457 GGPGQPQGMQPPGKVLPP---RRLPPGPSLPPSSSSSSSSSSSAPQRPGGPTTHGDAPSS 513
Query: 134 GESKEVGSPQSAGPAPGQHPQPQPSPMSLL---FSWMWSGLFSLNKGPPCRMMSSVATLR 190
S P A P P PQ + L FS+ S F + ++ +LR
Sbjct: 514 SSSLAEAQPPLAAPPQKPQPHPQLNKSQSLTNAFSFSESSFFRSSANEDEAKAETIRSLR 573
Query: 191 KASSTL 196
K+ ++L
Sbjct: 574 KSFASL 579
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 37.7 bits (86), Expect = 0.007
Identities = 40/147 (27%), Positives = 53/147 (36%), Gaps = 28/147 (19%)
Query: 46 AGMGQGGLLAPPTVAHTGGF---RPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQP 102
AG G GG A P + ++ G RP L P G G G A P S A++P P
Sbjct: 88 AGSG-GGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPP 146
Query: 103 G----------------------HRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVG 140
H+ + SPG + + GG LE +A S + G
Sbjct: 147 AYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGLEPYAGPQQNSHDHG 206
Query: 141 SP--QSAGPAPGQHPQPQPSPMSLLFS 165
P Q P + P P+P L S
Sbjct: 207 FPNHQYNSYYPNRSAYPPPAPAYALSS 233
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 37.7 bits (86), Expect = 0.007
Identities = 40/147 (27%), Positives = 53/147 (36%), Gaps = 28/147 (19%)
Query: 46 AGMGQGGLLAPPTVAHTGGF---RPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQP 102
AG G GG A P + ++ G RP L P G G G A P S A++P P
Sbjct: 88 AGSG-GGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPP 146
Query: 103 G----------------------HRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVG 140
H+ + SPG + + GG LE +A S + G
Sbjct: 147 AYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGLEPYAGPQQNSHDHG 206
Query: 141 SP--QSAGPAPGQHPQPQPSPMSLLFS 165
P Q P + P P+P L S
Sbjct: 207 FPNHQYNSYYPNRSAYPPPAPAYALSS 233
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 37.0 bits (84), Expect = 0.012
Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 44 EPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPG 103
EP G GL P G P + G P + GPPG P + + PG
Sbjct: 553 EPGLPGARGLTGRP-----GDAGPQGKVGPSGAPGEDGRPGPPG-PQGARGQPGVMGFPG 606
Query: 104 HRMQSSRASPGCCSCR-YPGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSP 159
+ + PG + PG L G + GE+ G P AGPA + Q P P
Sbjct: 607 PK--GANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGP 661
Score = 35.4 bits (80), Expect = 0.035
Identities = 34/111 (30%), Positives = 41/111 (36%), Gaps = 14/111 (12%)
Query: 45 PAGM-GQGGLLAPPTVAHTGGFR----PVLECEDGGGPAAGWQGGPPGYPASPSSRRASI 99
P G+ GQ G++ P GF P E G P A GPPG P P
Sbjct: 973 PQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG-PVGPPGLTGPA 1031
Query: 100 PQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPAPG 150
+PG P PG G GE+ VG+P + GP PG
Sbjct: 1032 GEPGREGSPGADGP-------PGRDGAAGVKGDRGETGAVGAPGAPGP-PG 1074
Score = 32.7 bits (73), Expect = 0.23
Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 19/112 (16%)
Query: 41 KRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIP 100
++ EP G G PP G R ++ G P + G PG P PS
Sbjct: 955 EKGEPGDDGPSGAEGPPGPQGLAGQRGIV-----GLPGQRGERGFPGLPG-PSG------ 1002
Query: 101 QPGHRMQSSRASPGCCSCRYPGG-LALEGWAWQAGESKEVGSPQSAGPAPGQ 151
+PG + +PG R P G + G AGE GSP + GP PG+
Sbjct: 1003 EPG-----KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP-PGR 1048
Score = 32.0 bits (71), Expect = 0.39
Identities = 38/139 (27%), Positives = 49/139 (35%), Gaps = 37/139 (26%)
Query: 39 ERKRSEPAGM-------GQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPAS 91
ER R+ PAG GQ G PP PV GPA G PG+P +
Sbjct: 331 ERGRTGPAGAAGARGNDGQPGPAGPPG--------PV-------GPAGG-----PGFPGA 370
Query: 92 PSSRRASIP---QPGHRMQSSRASPGCCSCRYPGGLA-------LEGWAWQAGESKEVGS 141
P ++ + P + Q R PG P G + + G AG G+
Sbjct: 371 PGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGA 430
Query: 142 PQSAGPAPGQHPQPQPSPM 160
P GP PQ P+
Sbjct: 431 PGFPGPRGPPGPQGATGPL 449
Score = 32.0 bits (71), Expect = 0.39
Identities = 32/113 (28%), Positives = 39/113 (34%), Gaps = 22/113 (19%)
Query: 47 GMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRM 106
G G G + PP A G E G + GPPG S +R A PG R
Sbjct: 784 GRGLTGPIGPPGPAGANG-------EKG-------EVGPPGPAGSAGARGA----PGERG 825
Query: 107 QSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSP 159
++ P + G +G GE E G AG Q P P P
Sbjct: 826 ETGPPGPA----GFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGP 874
Score = 31.2 bits (69), Expect = 0.67
Identities = 33/125 (26%), Positives = 39/125 (31%), Gaps = 12/125 (9%)
Query: 42 RSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGG----------PAAGWQGGPPGYPAS 91
R P G+ G PP A G R G P G + G G P
Sbjct: 629 RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGE 688
Query: 92 PSSRRASIPQPGHRMQSSRASPGCCSCRYPGGL-ALEGWAWQAGESKEVGSPQSAGPAPG 150
+ P+ R SPG + P GL G G S G P + GP PG
Sbjct: 689 AGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGP-PG 747
Query: 151 QHPQP 155
P
Sbjct: 748 LQGMP 752
Score = 30.4 bits (67), Expect = 1.1
Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 75 GGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAG 134
G P A + GPPG +P P + +R G PG G AG
Sbjct: 897 GFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGP-----PGRAGEPGLQGPAG 951
Query: 135 ESKEVGSPQSAGPAPGQHPQPQPSPMSL 162
E G P GP+ + P P P L
Sbjct: 952 PPGEKGEPGDDGPSGAEGP---PGPQGL 976
Score = 30.0 bits (66), Expect = 1.5
Identities = 35/122 (28%), Positives = 43/122 (35%), Gaps = 23/122 (18%)
Query: 32 PQVKQTHERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDG--GGPAAGWQGGPPGYP 89
PQ Q + + EP G G PP G +DG G P + GPPG
Sbjct: 220 PQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPG-------DDGEAGKPGKAGERGPPG-- 270
Query: 90 ASPSSRRASIPQPGHRMQSSRASPGCCSCR-YPGGLALEGWAWQAGESKEVGSP-QSAGP 147
PQ + PG R YPG +G A G E GSP ++ P
Sbjct: 271 ----------PQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSP 320
Query: 148 AP 149
P
Sbjct: 321 GP 322
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 37.0 bits (84), Expect = 0.012
Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 44 EPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPG 103
EP G GL P G P + G P + GPPG P + + PG
Sbjct: 484 EPGLPGARGLTGRP-----GDAGPQGKVGPSGAPGEDGRPGPPG-PQGARGQPGVMGFPG 537
Query: 104 HRMQSSRASPGCCSCR-YPGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSP 159
+ + PG + PG L G + GE+ G P AGPA + Q P P
Sbjct: 538 PK--GANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGP 592
Score = 35.4 bits (80), Expect = 0.035
Identities = 34/111 (30%), Positives = 41/111 (36%), Gaps = 14/111 (12%)
Query: 45 PAGM-GQGGLLAPPTVAHTGGFR----PVLECEDGGGPAAGWQGGPPGYPASPSSRRASI 99
P G+ GQ G++ P GF P E G P A GPPG P P
Sbjct: 904 PQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG-PVGPPGLTGPA 962
Query: 100 PQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPAPG 150
+PG P PG G GE+ VG+P + GP PG
Sbjct: 963 GEPGREGSPGADGP-------PGRDGAAGVKGDRGETGAVGAPGAPGP-PG 1005
Score = 32.7 bits (73), Expect = 0.23
Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 19/112 (16%)
Query: 41 KRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIP 100
++ EP G G PP G R ++ G P + G PG P PS
Sbjct: 886 EKGEPGDDGPSGAEGPPGPQGLAGQRGIV-----GLPGQRGERGFPGLPG-PSG------ 933
Query: 101 QPGHRMQSSRASPGCCSCRYPGG-LALEGWAWQAGESKEVGSPQSAGPAPGQ 151
+PG + +PG R P G + G AGE GSP + GP PG+
Sbjct: 934 EPG-----KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP-PGR 979
Score = 32.0 bits (71), Expect = 0.39
Identities = 38/139 (27%), Positives = 49/139 (35%), Gaps = 37/139 (26%)
Query: 39 ERKRSEPAGM-------GQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPAS 91
ER R+ PAG GQ G PP PV GPA G PG+P +
Sbjct: 262 ERGRTGPAGAAGARGNDGQPGPAGPPG--------PV-------GPAGG-----PGFPGA 301
Query: 92 PSSRRASIP---QPGHRMQSSRASPGCCSCRYPGGLA-------LEGWAWQAGESKEVGS 141
P ++ + P + Q R PG P G + + G AG G+
Sbjct: 302 PGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGA 361
Query: 142 PQSAGPAPGQHPQPQPSPM 160
P GP PQ P+
Sbjct: 362 PGFPGPRGPPGPQGATGPL 380
Score = 32.0 bits (71), Expect = 0.39
Identities = 32/113 (28%), Positives = 39/113 (34%), Gaps = 22/113 (19%)
Query: 47 GMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRM 106
G G G + PP A G E G + GPPG S +R A PG R
Sbjct: 715 GRGLTGPIGPPGPAGANG-------EKG-------EVGPPGPAGSAGARGA----PGERG 756
Query: 107 QSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSP 159
++ P + G +G GE E G AG Q P P P
Sbjct: 757 ETGPPGPA----GFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGP 805
Score = 31.2 bits (69), Expect = 0.67
Identities = 33/125 (26%), Positives = 39/125 (31%), Gaps = 12/125 (9%)
Query: 42 RSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGG----------PAAGWQGGPPGYPAS 91
R P G+ G PP A G R G P G + G G P
Sbjct: 560 RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGE 619
Query: 92 PSSRRASIPQPGHRMQSSRASPGCCSCRYPGGL-ALEGWAWQAGESKEVGSPQSAGPAPG 150
+ P+ R SPG + P GL G G S G P + GP PG
Sbjct: 620 AGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGP-PG 678
Query: 151 QHPQP 155
P
Sbjct: 679 LQGMP 683
Score = 30.4 bits (67), Expect = 1.1
Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 75 GGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAG 134
G P A + GPPG +P P + +R G PG G AG
Sbjct: 828 GFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGP-----PGRAGEPGLQGPAG 882
Query: 135 ESKEVGSPQSAGPAPGQHPQPQPSPMSL 162
E G P GP+ + P P P L
Sbjct: 883 PPGEKGEPGDDGPSGAEGP---PGPQGL 907
Score = 30.0 bits (66), Expect = 1.5
Identities = 35/122 (28%), Positives = 43/122 (35%), Gaps = 23/122 (18%)
Query: 32 PQVKQTHERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDG--GGPAAGWQGGPPGYP 89
PQ Q + + EP G G PP G +DG G P + GPPG
Sbjct: 151 PQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPG-------DDGEAGKPGKAGERGPPG-- 201
Query: 90 ASPSSRRASIPQPGHRMQSSRASPGCCSCR-YPGGLALEGWAWQAGESKEVGSP-QSAGP 147
PQ + PG R YPG +G A G E GSP ++ P
Sbjct: 202 ----------PQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSP 251
Query: 148 AP 149
P
Sbjct: 252 GP 253
>gi|37622910 cholinergic receptor, muscarinic 1 [Homo sapiens]
Length = 460
Score = 36.6 bits (83), Expect = 0.016
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 47 GMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRM 106
G P TV T +R E E+ A QG SS + QPG
Sbjct: 191 GTAMAAFYLPVTVMCTLYWRIYRETENRARELAALQGSETPGKGGGSSSSSERSQPGAEG 250
Query: 107 QSSRASPGCC-SCRYPGGLALEGWAWQAGESKEVGSPQSAGPAPGQHP 153
CC CR P L+ ++W+ E ++ GS +S + G+ P
Sbjct: 251 SPETPPGRCCRCCRAP--RLLQAYSWKEEEEEDEGSMESLTSSEGEEP 296
>gi|157388929 epsin 3 [Homo sapiens]
Length = 632
Score = 36.6 bits (83), Expect = 0.016
Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 52 GLLAP-PTVAHTGGF--RPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQS 108
GL AP PT G RP L G PA G GGP G P + AS+P P + +
Sbjct: 529 GLSAPSPTNPFGAGEPGRPTLNQMRTGSPALGLAGGPVGAPLGSMTYSASLPLPLSSVPA 588
Query: 109 SRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQ 156
P S +P A + +P SAGP P P PQ
Sbjct: 589 GLTLPASVSV-FPQAGAF-------APQPLLPTPSSAGPRP---PPPQ 625
>gi|169171580 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 36.2 bits (82), Expect = 0.021
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 5/130 (3%)
Query: 72 EDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAW 131
E G AG +G +P +R + H+ + A+PG S R PG A+
Sbjct: 55 ESRDGQQAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGA-AVPSCFP 113
Query: 132 QAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPCRMMSSVATLRK 191
A +++G P GP+P Q P SP SG P R S+A R+
Sbjct: 114 TAAAHRDLGEP-GRGPSPSQASGPSRSPRVPPAHPELSG---SRPRSPRRPRGSIAAARE 169
Query: 192 ASSTLLESLA 201
A LL+ A
Sbjct: 170 ALRELLKPCA 179
>gi|113419324 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 36.2 bits (82), Expect = 0.021
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 5/130 (3%)
Query: 72 EDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAW 131
E G AG +G +P +R + H+ + A+PG S R PG A+
Sbjct: 55 ESRDGQQAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGA-AVPSCFP 113
Query: 132 QAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPCRMMSSVATLRK 191
A +++G P GP+P Q P SP SG P R S+A R+
Sbjct: 114 TAAAHRDLGEP-GRGPSPSQASGPSRSPRVPPAHPELSG---SRPRSPRRPRGSIAAARE 169
Query: 192 ASSTLLESLA 201
A LL+ A
Sbjct: 170 ALRELLKPCA 179
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 36.2 bits (82), Expect = 0.021
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 88 YPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSPQSAGP 147
YP + P PG R ++ ++ PGC S +P G +AG + G P+ P
Sbjct: 141 YPRAVPEATPLRPPPGTRPRA-KSRPGCRSSPFPARSRTPG---EAGPPR--GDPRPRAP 194
Query: 148 APGQHPQPQPS 158
PG HP+ P+
Sbjct: 195 RPGDHPRRSPA 205
>gi|239747677 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 36.2 bits (82), Expect = 0.021
Identities = 40/104 (38%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 77 PAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSC-RYPGGLA-LEGWAWQAG 134
P AG PPG PS RRA I QP R QSS SP C C PG A AG
Sbjct: 120 PRAGPAPPPPG---PPSLRRAPINQP-RRCQSSGGSPRRCHCSSVPGAPAPASQLPRPAG 175
Query: 135 ESKEVGSPQSAGPAPGQHP-----QPQPSPMSLLFSWMWSGLFS 173
E +V P SA PG+ +P SP + W+G+ S
Sbjct: 176 EVNKVKYP-SAARGPGRSTLGVGCEPAASPA----AGGWAGVTS 214
>gi|113418864 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 36.2 bits (82), Expect = 0.021
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 5/130 (3%)
Query: 72 EDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAW 131
E G AG +G +P +R + H+ + A+PG S R PG A+
Sbjct: 55 ESRDGQQAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGA-AVPSCFP 113
Query: 132 QAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPCRMMSSVATLRK 191
A +++G P GP+P Q P SP SG P R S+A R+
Sbjct: 114 TAAAHRDLGEP-GRGPSPSQASGPSRSPRVPPAHPELSG---SRPRSPRRPRGSIAAARE 169
Query: 192 ASSTLLESLA 201
A LL+ A
Sbjct: 170 ALRELLKPCA 179
>gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo
sapiens]
Length = 262
Score = 36.2 bits (82), Expect = 0.021
Identities = 40/104 (38%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 77 PAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSC-RYPGGLA-LEGWAWQAG 134
P AG PPG PS RRA I QP R QSS SP C C PG A AG
Sbjct: 120 PRAGPAPPPPG---PPSLRRAPINQP-RRCQSSGGSPRRCHCSSVPGAPAPASQLPRPAG 175
Query: 135 ESKEVGSPQSAGPAPGQHP-----QPQPSPMSLLFSWMWSGLFS 173
E +V P SA PG+ +P SP + W+G+ S
Sbjct: 176 EVNKVKYP-SAARGPGRSTLGVGCEPAASPA----AGGWAGVTS 214
>gi|239509076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 36.2 bits (82), Expect = 0.021
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 5/130 (3%)
Query: 72 EDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAW 131
E G AG +G +P +R + H+ + A+PG S R PG A+
Sbjct: 55 ESRDGQQAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGA-AVPSCFP 113
Query: 132 QAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPCRMMSSVATLRK 191
A +++G P GP+P Q P SP SG P R S+A R+
Sbjct: 114 TAAAHRDLGEP-GRGPSPSQASGPSRSPRVPPAHPELSG---SRPRSPRRPRGSIAAARE 169
Query: 192 ASSTLLESLA 201
A LL+ A
Sbjct: 170 ALRELLKPCA 179
>gi|14993776 skeletal myosin light chain kinase [Homo sapiens]
Length = 596
Score = 36.2 bits (82), Expect = 0.021
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 10/106 (9%)
Query: 37 THERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRR 96
T ++ PA G LA P+ + G P E + GGGPA G G P P ++
Sbjct: 49 TLKKDAKAPASEKGDGTLAQPSTSSQG---PKGEGDRGGGPAEGSAGPPAALPQQTATPE 105
Query: 97 ASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGSP 142
S+ +P +A G + PG + A + + GSP
Sbjct: 106 TSVKKP-------KAEQGASGSQDPGKPRVGKKAAEGQAAARRGSP 144
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,672,102
Number of Sequences: 37866
Number of extensions: 802543
Number of successful extensions: 5183
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 440
Number of HSP's that attempted gapping in prelim test: 4061
Number of HSP's gapped (non-prelim): 1425
length of query: 210
length of database: 18,247,518
effective HSP length: 98
effective length of query: 112
effective length of database: 14,536,650
effective search space: 1628104800
effective search space used: 1628104800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.