Guide to the Human Genome
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Name: CHRM1 Sequence: fasta or formatted (460aa) NCBI GI: 37622910
Description:

cholinergic receptor, muscarinic 1

Referenced in:

Acetylcholine

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         38           2
 C cysteine            3.3         15           2
 D aspartate           2.2         10           1
 E glutamate           5.4         25           5
 F phenylalanine       3.5         16           1
 G glycine             6.3         29           3
 H histidine           0.4          2           1
 I isoleucine          4.1         19           2
 K lysine              5.2         24           2
 L leucine            11.7         54           4
 M methionine          2.6         12           1
 N asparagine          3.3         15           2
 P proline             6.7         31           2
 Q glutamine           2.8         13           1
 R arginine            7.0         32           2
 S serine              7.6         35           5
 T threonine           7.6         35           2
 V valine              5.7         26           2
 W tryptophan          2.8         13           1
 Y tyrosine            3.5         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cholinergic receptor, muscarinic 1 
CHRM3                 0.503   cholinergic receptor, muscarinic 3 
CHRM5                 0.503   cholinergic receptor, muscarinic 5 
CHRM4                 0.409   cholinergic receptor, muscarinic 4 
CHRM2                 0.399   cholinergic receptor, muscarinic 2 
CHRM2                 0.399   cholinergic receptor, muscarinic 2 
CHRM2                 0.399   cholinergic receptor, muscarinic 2 
CHRM2                 0.399   cholinergic receptor, muscarinic 2 
CHRM2                 0.399   cholinergic receptor, muscarinic 2 
CHRM2                 0.399   cholinergic receptor, muscarinic 2 
CHRM2                 0.399   cholinergic receptor, muscarinic 2 
CHRM2                 0.399   cholinergic receptor, muscarinic 2 
HRH3                  0.210   histamine receptor H3 
HRH1                  0.174   histamine receptor H1 
HRH1                  0.174   histamine receptor H1 
HRH1                  0.174   histamine receptor H1 
HRH1                  0.174   histamine receptor H1 
HTR1A                 0.167   5-hydroxytryptamine (serotonin) receptor 1A 
ADRA2A                0.157   alpha-2A-adrenergic receptor 
ADRA2B                0.148   alpha-2B-adrenergic receptor 
ADRA2C                0.144   alpha-2C-adrenergic receptor 
HTR1B                 0.142   5-hydroxytryptamine (serotonin) receptor 1B 
DRD2                  0.132   dopamine receptor D2 isoform long 
DRD2                  0.132   dopamine receptor D2 isoform short 
DRD4                  0.129   dopamine receptor D4 
DRD3                  0.121   dopamine receptor D3 isoform a 
HTR1F                 0.117   5-hydroxytryptamine (serotonin) receptor 1F 
HTR1E                 0.115   5-hydroxytryptamine (serotonin) receptor 1E 
ADRB3                 0.112   adrenergic, beta-3-, receptor 
HTR2C                 0.110   5-hydroxytryptamine (serotonin) receptor 2C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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