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Search of human proteins with 239745531
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745531 PREDICTED: similar to TP53 target 3 isoform 1
[Homo sapiens]
(132 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745531 PREDICTED: similar to TP53 target 3 isoform 1 [Homo... 284 2e-77
gi|169209862 PREDICTED: similar to TP53 target 3 isoform 3 [Homo... 264 2e-71
gi|153791741 hypothetical protein LOC729355 [Homo sapiens] 258 1e-69
gi|7706743 TP53 target 3 [Homo sapiens] 258 1e-69
gi|169209864 PREDICTED: similar to TP53 target 3 isoform 2 [Homo... 174 2e-44
gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens] 41 3e-04
gi|27502386 nuclear factor of activated T-cells, cytosolic compo... 35 0.022
gi|6912446 potassium voltage-gated channel, subfamily H, member ... 32 0.15
gi|169161777 PREDICTED: hypothetical protein [Homo sapiens] 31 0.32
gi|169161622 PREDICTED: hypothetical protein [Homo sapiens] 31 0.32
gi|169162826 PREDICTED: hypothetical protein [Homo sapiens] 31 0.32
gi|224465184 nuclear factor I/A isoform 4 [Homo sapiens] 30 0.42
gi|224465182 nuclear factor I/A isoform 3 [Homo sapiens] 30 0.42
gi|197927284 nuclear factor I/A isoform 1 [Homo sapiens] 30 0.42
gi|239756560 PREDICTED: hypothetical protein [Homo sapiens] 30 0.55
gi|239745525 PREDICTED: hypothetical protein [Homo sapiens] 30 0.55
gi|237512940 early growth response 4 [Homo sapiens] 30 0.55
gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens] 30 0.55
gi|169178932 PREDICTED: hypothetical protein [Homo sapiens] 30 0.72
gi|169172282 PREDICTED: similar to hCG1818014 [Homo sapiens] 30 0.72
gi|169176343 PREDICTED: hypothetical protein [Homo sapiens] 30 0.72
gi|157738639 tensin 4 [Homo sapiens] 30 0.72
gi|63252910 IQ motif and WD repeats 1 isoform b [Homo sapiens] 29 0.94
gi|63252908 IQ motif and WD repeats 1 isoform a [Homo sapiens] 29 0.94
gi|221139926 NHS-like 1 [Homo sapiens] 29 0.94
gi|239755778 PREDICTED: mucin 19, oligomeric [Homo sapiens] 29 0.94
gi|239750280 PREDICTED: mucin 19, oligomeric [Homo sapiens] 29 0.94
gi|239744589 PREDICTED: mucin 19 [Homo sapiens] 29 0.94
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 29 0.94
gi|42821110 hypothetical protein LOC340602 [Homo sapiens] 29 0.94
>gi|239745531 PREDICTED: similar to TP53 target 3 isoform 1 [Homo
sapiens]
Length = 132
Score = 284 bits (726), Expect = 2e-77
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPC 60
MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPC
Sbjct: 1 MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPC 60
Query: 61 CFQISPAEETLELGRLVSPGNCDTLSPRAAGFYACHVRSLIPCRSTKGRWPLTASAAGLS 120
CFQISPAEETLELGRLVSPGNCDTLSPRAAGFYACHVRSLIPCRSTKGRWPLTASAAGLS
Sbjct: 61 CFQISPAEETLELGRLVSPGNCDTLSPRAAGFYACHVRSLIPCRSTKGRWPLTASAAGLS 120
Query: 121 RHAQCGPSLGLG 132
RHAQCGPSLGLG
Sbjct: 121 RHAQCGPSLGLG 132
>gi|169209862 PREDICTED: similar to TP53 target 3 isoform 3 [Homo
sapiens]
Length = 167
Score = 264 bits (674), Expect = 2e-71
Identities = 126/134 (94%), Positives = 127/134 (94%), Gaps = 2/134 (1%)
Query: 1 MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPC 60
MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPC
Sbjct: 1 MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPC 60
Query: 61 CFQISPAEETLELGRLVSPGNCDTLSPRAAGFYACHVRSLIPCRSTKGRWPLTASAAGLS 120
CFQISPAEETLELGRLVSPGNCDTLSPRAAGFYACHVRSLIPCRSTKGRWPLTASAAGLS
Sbjct: 61 CFQISPAEETLELGRLVSPGNCDTLSPRAAGFYACHVRSLIPCRSTKGRWPLTASAAGLS 120
Query: 121 RHAQ--CGPSLGLG 132
R +Q C P LG
Sbjct: 121 RLSQILCTPGAPLG 134
>gi|153791741 hypothetical protein LOC729355 [Homo sapiens]
Length = 124
Score = 258 bits (658), Expect = 1e-69
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPC 60
MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPC
Sbjct: 1 MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPC 60
Query: 61 CFQISPAEETLELGRLVSPGNCDTLSPRAAGFYACHVRSLIPCRSTKGRWPLTASAAGLS 120
CFQISPAEETLELGRLVSPGNCDTLSPRAAGFYACHVRSLIPCRSTKGRWPLTASAAGLS
Sbjct: 61 CFQISPAEETLELGRLVSPGNCDTLSPRAAGFYACHVRSLIPCRSTKGRWPLTASAAGLS 120
>gi|7706743 TP53 target 3 [Homo sapiens]
Length = 124
Score = 258 bits (658), Expect = 1e-69
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPC 60
MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPC
Sbjct: 1 MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPC 60
Query: 61 CFQISPAEETLELGRLVSPGNCDTLSPRAAGFYACHVRSLIPCRSTKGRWPLTASAAGLS 120
CFQISPAEETLELGRLVSPGNCDTLSPRAAGFYACHVRSLIPCRSTKGRWPLTASAAGLS
Sbjct: 61 CFQISPAEETLELGRLVSPGNCDTLSPRAAGFYACHVRSLIPCRSTKGRWPLTASAAGLS 120
>gi|169209864 PREDICTED: similar to TP53 target 3 isoform 2 [Homo
sapiens]
Length = 102
Score = 174 bits (441), Expect = 2e-44
Identities = 81/88 (92%), Positives = 84/88 (95%)
Query: 1 MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPC 60
MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPC
Sbjct: 1 MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPC 60
Query: 61 CFQISPAEETLELGRLVSPGNCDTLSPR 88
CFQISPAEETLELGRLVSPG + +P+
Sbjct: 61 CFQISPAEETLELGRLVSPGCHKSSAPQ 88
>gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]
Length = 2013
Score = 40.8 bits (94), Expect = 3e-04
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 4 SPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPCCFQ 63
+P +A P SA TAG+ P TR P SA P CGE+ C +
Sbjct: 1343 TPSNGPSSAHTGPPSSAWPTTAGTSPRTRLP----TASASLPPV-------CGEK-CLW- 1389
Query: 64 ISPAEETLELGRLVSPGNCDTL-SPRAAGFYACHVRSLIPCRSTKGRW-PLTASAAGLSR 121
SP + GR G+ DTL + RA G+ C + CR+ PL A L +
Sbjct: 1390 -SPWMDVSRPGRGTDSGDFDTLENLRAHGYRVCESPRSVECRAEDAPGVPLRA----LGQ 1444
Query: 122 HAQCGPSLGL 131
QC P +GL
Sbjct: 1445 RVQCSPDVGL 1454
Score = 28.5 bits (62), Expect = 1.6
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 16 PRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPCCFQISPAEETLELGR 75
P P + T+ S T TPGT S P P+ S C +E C + E ++ G
Sbjct: 1540 PSPPPVPATSTSSMSTTTPGTSVVSSK--PTLTEPSTSSCLQELCTW-----TEWID-GS 1591
Query: 76 LVSP----GNCDTL-SPRAAGFYACHVRSLIPCRSTKGRWPLTASAAGLSRHAQCGPSLG 130
+P G+ DT + R G+ C + CR+ +P T A L + C + G
Sbjct: 1592 YPAPGINGGDFDTFQNLRDEGYTFCESPRSVQCRAES--FPNT-PLADLGQDVICSHTEG 1648
Query: 131 L 131
L
Sbjct: 1649 L 1649
>gi|27502386 nuclear factor of activated T-cells, cytosolic
component 1 isoform C [Homo sapiens]
Length = 930
Score = 34.7 bits (78), Expect = 0.022
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 5 PCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPCCFQ- 63
P + P + P P+ L + P + P +E CP+ SP + P +EP C Q
Sbjct: 793 PVATHPGSPGQPPPALLPQQVSAPPSSSCPPGLEHSL--CPSSPSPPLPPATQEPTCLQP 850
Query: 64 ISPA 67
SPA
Sbjct: 851 CSPA 854
>gi|6912446 potassium voltage-gated channel, subfamily H, member 4
[Homo sapiens]
Length = 1017
Score = 32.0 bits (71), Expect = 0.15
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 28 GPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPCCFQISPAEETLELGRLVSPGNCDTLSP 87
GP G+ PCP R P +SPC P P+ + L + P + T+
Sbjct: 913 GPPGHPAGSAWTPDPPCPQLRPPCLSPCASRP-----PPSLQDTTLAEVHCPASVGTMET 967
Query: 88 RAA 90
A
Sbjct: 968 GTA 970
>gi|169161777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 30.8 bits (68), Expect = 0.32
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 4 SPCISQPAASWHPRPSALRPTAGSGPDTRTPGT----VEDGSAPCPAFRSPAVSPCGEEP 59
SP +S S + A PT D+ PG + G+A P ++ V
Sbjct: 83 SPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQ 142
Query: 60 CCFQISPAEETLELGRLVSPGNCDTLSPRAA 90
Q +P + +ELG V G+C +L P+ A
Sbjct: 143 TAVQTAPWQVGVELGVWVGLGSCGSLRPQLA 173
>gi|169161622 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 30.8 bits (68), Expect = 0.32
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 4 SPCISQPAASWHPRPSALRPTAGSGPDTRTPGT----VEDGSAPCPAFRSPAVSPCGEEP 59
SP +S S + A PT D+ PG + G+A P ++ V
Sbjct: 83 SPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQ 142
Query: 60 CCFQISPAEETLELGRLVSPGNCDTLSPRAA 90
Q +P + +ELG V G+C +L P+ A
Sbjct: 143 TAVQTAPWQVGVELGVWVGLGSCGSLRPQLA 173
>gi|169162826 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 30.8 bits (68), Expect = 0.32
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 4 SPCISQPAASWHPRPSALRPTAGSGPDTRTPGT----VEDGSAPCPAFRSPAVSPCGEEP 59
SP +S S + A PT D+ PG + G+A P ++ V
Sbjct: 83 SPSLSLTPGSGSEKREAGGPTGPKREDSALPGASTSHLPAGTADPPPPQAGLVRDSRAGQ 142
Query: 60 CCFQISPAEETLELGRLVSPGNCDTLSPRAA 90
Q +P + +ELG V G+C +L P+ A
Sbjct: 143 TAVQTAPWQVGVELGVWVGLGSCGSLRPQLA 173
>gi|224465184 nuclear factor I/A isoform 4 [Homo sapiens]
Length = 554
Score = 30.4 bits (67), Expect = 0.42
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 4 SPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSA---PCPAFRSPAVSP 54
+P + P P P RP PDT+ P T +G A P + +P+ SP
Sbjct: 474 NPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSP 527
>gi|224465182 nuclear factor I/A isoform 3 [Homo sapiens]
Length = 501
Score = 30.4 bits (67), Expect = 0.42
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 4 SPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSA---PCPAFRSPAVSP 54
+P + P P P RP PDT+ P T +G A P + +P+ SP
Sbjct: 421 NPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSP 474
>gi|197927284 nuclear factor I/A isoform 1 [Homo sapiens]
Length = 509
Score = 30.4 bits (67), Expect = 0.42
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 4 SPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSA---PCPAFRSPAVSP 54
+P + P P P RP PDT+ P T +G A P + +P+ SP
Sbjct: 429 NPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSP 482
>gi|239756560 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 30.0 bits (66), Expect = 0.55
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 10 PAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCP 45
P + P +LRP A SG PG V GS PCP
Sbjct: 135 PLPQYAVSPRSLRPEARSGVPRGPPG-VSPGSTPCP 169
>gi|239745525 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 30.0 bits (66), Expect = 0.55
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 10 PAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCP 45
P + P +LRP A SG PG V GS PCP
Sbjct: 135 PLPQYAVSPRSLRPEARSGVPRGPPG-VSPGSTPCP 169
>gi|237512940 early growth response 4 [Homo sapiens]
Length = 589
Score = 30.0 bits (66), Expect = 0.55
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 7 ISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGE 57
+ +P ++ R +A R G R P + G P P R+P CGE
Sbjct: 25 LGEPGSALERRGAAARGRCGRARAPRLPDSFPRGECPKPGARAPRSVRCGE 75
>gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens]
Length = 1024
Score = 30.0 bits (66), Expect = 0.55
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 8 SQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFR---SPAVSP 54
S PA+ + S LR AG GP R G V +APC R SP V+P
Sbjct: 34 SPPASMYGSTGSLLRRVAGPGPRGRELGRV---TAPCTPLRGPPSPRVAP 80
>gi|169178932 PREDICTED: hypothetical protein [Homo sapiens]
Length = 62
Score = 29.6 bits (65), Expect = 0.72
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 1 MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEE 58
MR SP S P PR G GP+ R PG G P PA S + C E
Sbjct: 1 MRRSPASSPPGGE--PR--------GLGPERRQPGCSPPGELPSPAGDSGEPADCEAE 48
>gi|169172282 PREDICTED: similar to hCG1818014 [Homo sapiens]
Length = 127
Score = 29.6 bits (65), Expect = 0.72
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 16 PRPSALRPTAGSGPDTRTPGTVEDGSAPCP 45
PRPS L + GS PD + P +AP P
Sbjct: 92 PRPSDLNSSTGSSPDLQLPDPQTPTAAPAP 121
>gi|169176343 PREDICTED: hypothetical protein [Homo sapiens]
Length = 62
Score = 29.6 bits (65), Expect = 0.72
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 1 MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEE 58
MR SP S P PR G GP+ R PG G P PA S + C E
Sbjct: 1 MRRSPASSPPGGE--PR--------GLGPERRQPGCSPPGELPSPAGDSGEPADCEAE 48
>gi|157738639 tensin 4 [Homo sapiens]
Length = 715
Score = 29.6 bits (65), Expect = 0.72
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Query: 23 PTAGSGPDTRTPG---TVEDGSA----PCPAFRS 49
P GS P RTPG +V+ G+A PCPA RS
Sbjct: 381 PEPGSSPPQRTPGHQNSVQPGAASPSNPCPATRS 414
>gi|63252910 IQ motif and WD repeats 1 isoform b [Homo sapiens]
Length = 860
Score = 29.3 bits (64), Expect = 0.94
Identities = 22/89 (24%), Positives = 29/89 (32%)
Query: 8 SQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPCCFQISPA 67
S+P + PT S PD T + P F P+ S SP
Sbjct: 369 SRPRGGTSQSDISTLPTVPSSPDLEVSETAMEVDTPAEQFLQPSTSSTMSAQAHSTSSPT 428
Query: 68 EETLELGRLVSPGNCDTLSPRAAGFYACH 96
E L SP + S A+G + H
Sbjct: 429 ESPHSTPLLSSPDSEQRQSVEASGHHTHH 457
>gi|63252908 IQ motif and WD repeats 1 isoform a [Homo sapiens]
Length = 880
Score = 29.3 bits (64), Expect = 0.94
Identities = 22/89 (24%), Positives = 29/89 (32%)
Query: 8 SQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPCCFQISPA 67
S+P + PT S PD T + P F P+ S SP
Sbjct: 369 SRPRGGTSQSDISTLPTVPSSPDLEVSETAMEVDTPAEQFLQPSTSSTMSAQAHSTSSPT 428
Query: 68 EETLELGRLVSPGNCDTLSPRAAGFYACH 96
E L SP + S A+G + H
Sbjct: 429 ESPHSTPLLSSPDSEQRQSVEASGHHTHH 457
>gi|221139926 NHS-like 1 [Homo sapiens]
Length = 1606
Score = 29.3 bits (64), Expect = 0.94
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 21 LRPTAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPCCFQISP 66
L P GS P P V PCPA RSP + P C Q SP
Sbjct: 920 LDPAVGS-PPAPPPPPVPSPPFPCPADRSPFLPPPPPVTDCSQGSP 964
>gi|239755778 PREDICTED: mucin 19, oligomeric [Homo sapiens]
Length = 598
Score = 29.3 bits (64), Expect = 0.94
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 24 TAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPCCFQISPAEET----LELGRLVSP 79
T GSG +T T G V + +F + A S E P +P E + G V+P
Sbjct: 114 TTGSGMNTGTTGVVSGNTISPSSFNTEATSGTSERP-----NPGSEIGTTGIVSGTTVAP 168
Query: 80 GNCDTLSPRAAG 91
G+ +T + + G
Sbjct: 169 GSSNTEATTSLG 180
>gi|239750280 PREDICTED: mucin 19, oligomeric [Homo sapiens]
Length = 598
Score = 29.3 bits (64), Expect = 0.94
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 24 TAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPCCFQISPAEET----LELGRLVSP 79
T GSG +T T G V + +F + A S E P +P E + G V+P
Sbjct: 114 TTGSGMNTGTTGVVSGNTISPSSFNTEATSGTSERP-----NPGSEIGTTGIVSGTTVAP 168
Query: 80 GNCDTLSPRAAG 91
G+ +T + + G
Sbjct: 169 GSSNTEATTSLG 180
>gi|239744589 PREDICTED: mucin 19 [Homo sapiens]
Length = 598
Score = 29.3 bits (64), Expect = 0.94
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 24 TAGSGPDTRTPGTVEDGSAPCPAFRSPAVSPCGEEPCCFQISPAEET----LELGRLVSP 79
T GSG +T T G V + +F + A S E P +P E + G V+P
Sbjct: 114 TTGSGMNTGTTGVVSGNTISPSSFNTEATSGTSERP-----NPGSEIGTTGIVSGTTVAP 168
Query: 80 GNCDTLSPRAAG 91
G+ +T + + G
Sbjct: 169 GSSNTEATTSLG 180
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 29.3 bits (64), Expect = 0.94
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 8 SQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAF-RSPAVSPCGEEPCCFQISP 66
SQP ++ A T G ++ T + GS F R+P S GEEP F P
Sbjct: 2360 SQPGSTHSTVSPASTTTPGLSEESTTVYSSSPGSTETTVFPRTPTTSVRGEEPTTFHSRP 2419
Query: 67 A 67
A
Sbjct: 2420 A 2420
Score = 27.3 bits (59), Expect = 3.6
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 8 SQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAF-RSPAVSPCGEEPCCFQISP 66
SQP ++ A T G ++ T + GS F RS S GEEP F P
Sbjct: 2834 SQPGSTHSTVSPASTTTPGLSEESTTVYSSSPGSTETTVFPRSTTTSVRGEEPTTFHSRP 2893
Query: 67 A 67
A
Sbjct: 2894 A 2894
>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
Length = 503
Score = 29.3 bits (64), Expect = 0.94
Identities = 47/149 (31%), Positives = 59/149 (39%), Gaps = 33/149 (22%)
Query: 6 CISQPAASW-----HPRPSALRPTAGSGPDTR----TPGTVEDG--SAPCPAFR----SP 50
C +QP ++ H P+ L P + GP R PG G SAP PA R +P
Sbjct: 238 CTAQPGPAFPHRATHLDPARLSPESAPGPARRGRASVPGPARRGCDSAPGPARRGRDSAP 297
Query: 51 AVSPCGEEPCCFQISPAEETLELGRLVSPGNCDTLSPRAAGFYACHVRSL-------IPC 103
+P G + A + GR +PG L R A A H RS +
Sbjct: 298 VSAPRGRD-------SAPGSARRGRDSAPG--PALRVRTARSDAGH-RSTSTTPGTGLRS 347
Query: 104 RSTKGRWPLTASAAGLSRHAQCGPSLGLG 132
RST+ R L S LS A PS G G
Sbjct: 348 RSTQQRSAL-LSRRSLSGSADENPSCGTG 375
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,903,028
Number of Sequences: 37866
Number of extensions: 394143
Number of successful extensions: 1854
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 1737
Number of HSP's gapped (non-prelim): 219
length of query: 132
length of database: 18,247,518
effective HSP length: 91
effective length of query: 41
effective length of database: 14,801,712
effective search space: 606870192
effective search space used: 606870192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.