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Search of human proteins with 239745366
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745366 PREDICTED: hypothetical protein XP_002343448 [Homo
sapiens]
(100 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750960 PREDICTED: hypothetical protein XP_002347618 [Homo ... 204 9e-54
gi|239745366 PREDICTED: hypothetical protein XP_002343448 [Homo ... 204 9e-54
gi|109452595 zinc finger protein 205 [Homo sapiens] 35 0.013
gi|109452593 zinc finger protein 205 [Homo sapiens] 35 0.013
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|7662010 zinc finger protein 516 [Homo sapiens] 33 0.037
gi|239757091 PREDICTED: hypothetical protein [Homo sapiens] 33 0.063
gi|239751597 PREDICTED: hypothetical protein XP_002347925 [Homo ... 33 0.063
gi|239746112 PREDICTED: hypothetical protein XP_002344192 [Homo ... 33 0.063
gi|126352608 elastin isoform e precursor [Homo sapiens] 32 0.14
gi|126352446 elastin isoform d precursor [Homo sapiens] 32 0.14
gi|126352322 elastin isoform c precursor [Homo sapiens] 32 0.14
gi|126352700 elastin isoform b precursor [Homo sapiens] 32 0.14
gi|126352440 elastin isoform a precursor [Homo sapiens] 32 0.14
gi|219281831 F-box protein 15 isoform 2 [Homo sapiens] 32 0.14
gi|24497554 homeobox A13 [Homo sapiens] 31 0.24
gi|23503317 coiled-coil domain containing 96 [Homo sapiens] 31 0.24
gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo ... 30 0.41
gi|239756315 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|239750850 PREDICTED: hypothetical protein XP_002347579 [Homo ... 30 0.54
gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo ... 30 0.54
gi|239745213 PREDICTED: hypothetical protein XP_002343410 [Homo ... 30 0.54
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 30 0.54
gi|148762940 DVL-binding protein DAPLE [Homo sapiens] 30 0.54
gi|7661892 REST corepressor 1 [Homo sapiens] 29 0.70
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 29 0.70
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] 29 0.70
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 29 0.70
gi|169210554 PREDICTED: FLJ44904 protein [Homo sapiens] 29 0.92
gi|40807477 retinoic acid induced 1 [Homo sapiens] 28 1.2
>gi|239750960 PREDICTED: hypothetical protein XP_002347618 [Homo
sapiens]
Length = 100
Score = 204 bits (520), Expect = 9e-54
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MSETRATSTAAATSLCTVIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECA 60
MSETRATSTAAATSLCTVIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECA
Sbjct: 1 MSETRATSTAAATSLCTVIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECA 60
Query: 61 VFPGSGGRPVPRVPLLACSSGKQSHSGGRQQWESSPRHTP 100
VFPGSGGRPVPRVPLLACSSGKQSHSGGRQQWESSPRHTP
Sbjct: 61 VFPGSGGRPVPRVPLLACSSGKQSHSGGRQQWESSPRHTP 100
>gi|239745366 PREDICTED: hypothetical protein XP_002343448 [Homo
sapiens]
Length = 100
Score = 204 bits (520), Expect = 9e-54
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MSETRATSTAAATSLCTVIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECA 60
MSETRATSTAAATSLCTVIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECA
Sbjct: 1 MSETRATSTAAATSLCTVIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECA 60
Query: 61 VFPGSGGRPVPRVPLLACSSGKQSHSGGRQQWESSPRHTP 100
VFPGSGGRPVPRVPLLACSSGKQSHSGGRQQWESSPRHTP
Sbjct: 61 VFPGSGGRPVPRVPLLACSSGKQSHSGGRQQWESSPRHTP 100
>gi|109452595 zinc finger protein 205 [Homo sapiens]
Length = 554
Score = 35.0 bits (79), Expect = 0.013
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 28 PEKAKSQSAAARPGRADAARGWAAARTQGQECAVFPGSGGRPVPRVPLLA 77
PE+ S+ A+ G A A GWA +E A+F G P PR+P+L+
Sbjct: 53 PEEPHSEGASQEDG-AQGAWGWAPLSHGSKEKALFLPGGALPSPRIPVLS 101
>gi|109452593 zinc finger protein 205 [Homo sapiens]
Length = 554
Score = 35.0 bits (79), Expect = 0.013
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 28 PEKAKSQSAAARPGRADAARGWAAARTQGQECAVFPGSGGRPVPRVPLLA 77
PE+ S+ A+ G A A GWA +E A+F G P PR+P+L+
Sbjct: 53 PEEPHSEGASQEDG-AQGAWGWAPLSHGSKEKALFLPGGALPSPRIPVLS 101
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 34.7 bits (78), Expect = 0.017
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 20 ADAGAAAYPEKAKSQS----------AAARPGRADAARGWAAARTQGQECAVFPGSGGRP 69
A + A PE A++ S AAA+PG G ART+ + G P
Sbjct: 59 AGSSCLATPEPARAPSIAEPGPGIPVAAAKPGVLPGGGGCTGARTENPPLSPTRGDCRVP 118
Query: 70 VPRVPL-LACSSGKQSHSGGRQ 90
VP P+ L SG+++ GG Q
Sbjct: 119 VPAAPISLRWRSGREARPGGPQ 140
>gi|7662010 zinc finger protein 516 [Homo sapiens]
Length = 1163
Score = 33.5 bits (75), Expect = 0.037
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 11 AATSLCTVIADAGAAAYPEKAKSQSAAA-RPGRADAARGWAAARTQGQECAVFPGSGGRP 69
AA + C +++ +A+ P S AAA PG A AA G+E A P GG+P
Sbjct: 551 AARARCGSLSEGDSASQPSSPGSACAAADSPGSGLADE---AAEDSGEEGAPEPAPGGQP 607
Query: 70 -----VPRVPLLACSSGKQSHSGG 88
V SSG QSH G
Sbjct: 608 RRCCFSEEVTSTELSSGDQSHKMG 631
>gi|239757091 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 32.7 bits (73), Expect = 0.063
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 20 ADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECAVFPGSGGRPVPRVPLLACS 79
A GA++ K ++A+ P A AA T C G G RPVP VPL
Sbjct: 32 ATGGASSLHIKCM-EAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPL---- 86
Query: 80 SGKQSHSGGRQQWESSPRH 98
G SGG W S+ +H
Sbjct: 87 PGPAGRSGGPGAW-SAQKH 104
>gi|239751597 PREDICTED: hypothetical protein XP_002347925 [Homo
sapiens]
Length = 194
Score = 32.7 bits (73), Expect = 0.063
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 20 ADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECAVFPGSGGRPVPRVPLLACS 79
A GA++ K ++A+ P A AA T C G G RPVP VPL
Sbjct: 32 ATGGASSLHIKCM-EAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPL---- 86
Query: 80 SGKQSHSGGRQQWESSPRH 98
G SGG W S+ +H
Sbjct: 87 PGPAGRSGGPGAW-SAQKH 104
>gi|239746112 PREDICTED: hypothetical protein XP_002344192 [Homo
sapiens]
Length = 194
Score = 32.7 bits (73), Expect = 0.063
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 20 ADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECAVFPGSGGRPVPRVPLLACS 79
A GA++ K ++A+ P A AA T C G G RPVP VPL
Sbjct: 32 ATGGASSLHIKCM-EAASLLPRPPGKAPPGAAKSTSRVHCRAAEGGGLRPVPAVPL---- 86
Query: 80 SGKQSHSGGRQQWESSPRH 98
G SGG W S+ +H
Sbjct: 87 PGPAGRSGGPGAW-SAQKH 104
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 18 VIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECAVFPGSGGRPVPRVP 74
V AG A YP P A AA AAA+ V PG GG VP VP
Sbjct: 235 VAGAAGKAGYPT-----GTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPGVP 286
>gi|126352446 elastin isoform d precursor [Homo sapiens]
Length = 711
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 18 VIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECAVFPGSGGRPVPRVP 74
V AG A YP P A AA AAA+ V PG GG VP VP
Sbjct: 240 VAGAAGKAGYPT-----GTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPGVP 291
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 18 VIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECAVFPGSGGRPVPRVP 74
V AG A YP P A AA AAA+ V PG GG VP VP
Sbjct: 240 VAGAAGKAGYPT-----GTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPGVP 291
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 18 VIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECAVFPGSGGRPVPRVP 74
V AG A YP P A AA AAA+ V PG GG VP VP
Sbjct: 225 VAGAAGKAGYPT-----GTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPGVP 276
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 18 VIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECAVFPGSGGRPVPRVP 74
V AG A YP P A AA AAA+ V PG GG VP VP
Sbjct: 235 VAGAAGKAGYPT-----GTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPGVP 286
>gi|219281831 F-box protein 15 isoform 2 [Homo sapiens]
Length = 510
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 46 ARGWAAARTQGQECAVFPGSGGRPVPRVPLLACSSGKQSHSGGRQQWESS 95
+RG AAR + + G R P V L A S+ + H+GG Q WESS
Sbjct: 23 SRGGGAARGRAR------AFGCRKGPGVKLSAGSAALRCHAGGGQHWESS 66
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 30.8 bits (68), Expect = 0.24
Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 6 ATSTAAATSLCTVIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECAVFPGS 65
A + AAA + C + A P A + S+A AA AAA A S
Sbjct: 77 AAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSS 136
Query: 66 GGRPVPRVPLLA--------CSSGKQSHSG 87
GG P P P A CS+ QS SG
Sbjct: 137 GG-PGPAGPAGAEAAKQCSPCSAAAQSSSG 165
>gi|23503317 coiled-coil domain containing 96 [Homo sapiens]
Length = 555
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 29 EKAKSQSAAARPGRADAARGWAAARTQGQECAVFPGSGGRPVPRVP 74
E+A SQ A +A+A +G AA G+E PG GRP P
Sbjct: 53 EQAASQGGTAADEQAEAPKGLTAAEAAGEE---GPGEPGRPAEPQP 95
>gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo
sapiens]
Length = 316
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 28 PEKAKSQSAAARPGRADA-ARGWAAARTQ--GQECAVFPGSGGRPVPRVPLLACSSGKQS 84
P + K +A A+ G D +R W + GQE GG + P A + G +S
Sbjct: 198 PRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGG--KKPQKAAAPGAKS 255
Query: 85 HSGGRQQWESS 95
H R+QW+ +
Sbjct: 256 HKKPRRQWQKA 266
>gi|239756315 PREDICTED: hypothetical protein [Homo sapiens]
Length = 143
Score = 29.6 bits (65), Expect = 0.54
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 28 PEKAKSQSAAARPGRADAARGWAAARTQGQECAVFP 63
P + S P DA++GWA+ R +G FP
Sbjct: 7 PSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFP 42
>gi|239750850 PREDICTED: hypothetical protein XP_002347579 [Homo
sapiens]
Length = 143
Score = 29.6 bits (65), Expect = 0.54
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 28 PEKAKSQSAAARPGRADAARGWAAARTQGQECAVFP 63
P + S P DA++GWA+ R +G FP
Sbjct: 7 PSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFP 42
>gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo
sapiens]
Length = 300
Score = 29.6 bits (65), Expect = 0.54
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 5 RATSTAAATSLCTVIADAGAAAYPEKAKSQSAAAR------PGRADAAR---GWAAARTQ 55
RA +A A + A A E+A+ S A+R P RA AAR G AAA
Sbjct: 195 RAARSARAATAARAAAAEREEAREERARGCSEASRTSSDSGPSRAPAARVVGGEAAATAA 254
Query: 56 GQECAVFPGSGGRPVPRVPLLAC---SSGKQSHSGGR 89
+ P + G PVP P A ++G Q G R
Sbjct: 255 ARARPRAPLAAGSPVPVRPQDAAARSAAGMQPGHGRR 291
>gi|239745213 PREDICTED: hypothetical protein XP_002343410 [Homo
sapiens]
Length = 143
Score = 29.6 bits (65), Expect = 0.54
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 28 PEKAKSQSAAARPGRADAARGWAAARTQGQECAVFP 63
P + S P DA++GWA+ R +G FP
Sbjct: 7 PSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFP 42
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 29.6 bits (65), Expect = 0.54
Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 6 ATSTAAATSLCTVIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECAVFPGS 65
A + AAA + A A AAA P A + +AAA P A AA AA A P
Sbjct: 496 AAAIAAAAAAAAAAAAAAAAAAP--APALAAAAAPALAAAAAPALAAAA-----APAPAP 548
Query: 66 GGRPVPRVPLLACSSGKQSHS 86
P A +S SHS
Sbjct: 549 AAAPAVAAAPAAAASAAPSHS 569
>gi|148762940 DVL-binding protein DAPLE [Homo sapiens]
Length = 2028
Score = 29.6 bits (65), Expect = 0.54
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 11 AATSLCTVIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQ-GQECAVFPGSGGRP 69
+AT+ A AGAAA + SQ P A AAR A + G+ + P G
Sbjct: 1902 SATAPAIATAGAGAAAAGSGSNSQLLHFSPAAAPAARTKPKAPPRSGEVATITPVRAGLS 1961
Query: 70 VPR---VPLLACSSGKQSHSGGR 89
+ VP CS G + S GR
Sbjct: 1962 LSEGDGVPGQGCSEGLPAKSPGR 1984
>gi|7661892 REST corepressor 1 [Homo sapiens]
Length = 482
Score = 29.3 bits (64), Expect = 0.70
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 17/92 (18%)
Query: 2 SETRATSTAAATSLCT---VIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQE 58
S + A ++AAA++ C A +GAAA A + SAAA P + AAA G
Sbjct: 21 SASAAAASAAASAACASPAATAASGAAASSASAAAASAAAAPNNGQ-NKSLAAAAPNGNS 79
Query: 59 CAVF--PGSGGRPVPRVPLLACSSGKQSHSGG 88
+ GS G SS + H GG
Sbjct: 80 SSNSWEEGSSG-----------SSSDEEHGGG 100
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 6 ATSTAAATSLCTVIADAGAAAYPEKAKSQS-AAARPGRADAARGWAAARTQGQECAVFPG 64
AT+ + A + A A AAA P +++S AAA P ++ W + G
Sbjct: 40 ATAASGAAASSASAAAASAAAAPNNGQNKSLAAAAPNGNSSSNSWEEGSSGSSSDEEHGG 99
Query: 65 SGGRPVPR 72
G R P+
Sbjct: 100 GGMRVGPQ 107
>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo
sapiens]
Length = 170
Score = 29.3 bits (64), Expect = 0.70
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 6 ATSTAAATSLCTVIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECAVFPGS 65
A +TA A L ++ GAAA PE A++ A P A A A +R E A P
Sbjct: 13 ALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAP--APSRPCAPEPAASPAG 70
Query: 66 GGRP 69
P
Sbjct: 71 PEEP 74
>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo
sapiens]
Length = 177
Score = 29.3 bits (64), Expect = 0.70
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 6 ATSTAAATSLCTVIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECAVFPGS 65
A +TA A L ++ GAAA PE A++ A P A A A +R E A P
Sbjct: 13 ALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAP--APSRPCAPEPAASPAG 70
Query: 66 GGRP 69
P
Sbjct: 71 PEEP 74
>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo
sapiens]
Length = 204
Score = 29.3 bits (64), Expect = 0.70
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 6 ATSTAAATSLCTVIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECAVFPGS 65
A +TA A L ++ GAAA PE A++ A P A A A +R E A P
Sbjct: 13 ALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAP--APSRPCAPEPAASPAG 70
Query: 66 GGRP 69
P
Sbjct: 71 PEEP 74
>gi|169210554 PREDICTED: FLJ44904 protein [Homo sapiens]
Length = 196
Score = 28.9 bits (63), Expect = 0.92
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 24/87 (27%)
Query: 29 EKAKSQSAAARPGRADAARGWAAARTQGQECAVFPGSGGRP------------------- 69
E A+S S + PG+ ARGW +R G V S GRP
Sbjct: 53 ENAQSLSWLSPPGKR--ARGWRESRGHGPHPTV---SAGRPQHSSPSPRHTTRPAAPRQA 107
Query: 70 VPRVPLLACSSGKQSHSGGRQQWESSP 96
+P V L G+++ GG Q W + P
Sbjct: 108 LPGVHPLRRQVGEETCWGGAQAWAARP 134
>gi|40807477 retinoic acid induced 1 [Homo sapiens]
Length = 1906
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 5 RATSTAAATSLCTVIADAGAAAYPEKAKSQSAAARPGRADAARGWAAARTQGQECAVFP- 63
R A T++CTV+ G A P + S SA++ + + A G A P
Sbjct: 1600 RVEKRDAFTTICTVVNSPGDAPKPHRKPSSSASSSSSSSSFSLDAA-----GASLATLPG 1654
Query: 64 GSGGRPVPRVPL 75
GS +P P +PL
Sbjct: 1655 GSILQPRPSLPL 1666
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.121 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,336,687
Number of Sequences: 37866
Number of extensions: 199843
Number of successful extensions: 822
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 757
Number of HSP's gapped (non-prelim): 107
length of query: 100
length of database: 18,247,518
effective HSP length: 71
effective length of query: 29
effective length of database: 15,559,032
effective search space: 451211928
effective search space used: 451211928
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.