Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239745250

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745250 PREDICTED: hypothetical protein [Homo sapiens]
         (134 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239745250 PREDICTED: hypothetical protein [Homo sapiens]           276   5e-75
gi|239750887 PREDICTED: hypothetical protein [Homo sapiens]           228   1e-60
gi|239756362 PREDICTED: hypothetical protein [Homo sapiens]           226   6e-60
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            30   0.76 
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re...    29   0.99 
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re...    29   0.99 
gi|28372505 chromobox homolog 7 [Homo sapiens]                         28   1.7  
gi|223890252 glutamate receptor interacting protein 1 [Homo sapi...    28   2.2  
gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]            28   2.2  
gi|239748046 PREDICTED: hypothetical protein XP_002346501 [Homo ...    28   2.2  
gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo ...    28   2.2  
gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo ...    28   2.2  
gi|169180010 PREDICTED: hypothetical protein [Homo sapiens]            28   2.9  
gi|169178954 PREDICTED: hypothetical protein [Homo sapiens]            28   2.9  
gi|169176365 PREDICTED: hypothetical protein [Homo sapiens]            28   2.9  
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho...    27   3.8  
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom...    27   3.8  
gi|32490567 relaxin 3 receptor 2 [Homo sapiens]                        27   3.8  
gi|163644283 proteasome (prosome, macropain) activator subunit 4...    27   3.8  
gi|26051240 tumor necrosis factor, alpha-induced protein 2 [Homo...    27   4.9  
gi|221219020 NYD-SP11 protein [Homo sapiens]                           27   6.4  
gi|237757312 synaptojanin 1 isoform c [Homo sapiens]                   27   6.4  
gi|55953110 retinoblastoma protein-binding zinc finger protein i...    27   6.4  
gi|20336260 retinoblastoma protein-binding zinc finger protein i...    27   6.4  
gi|20336258 retinoblastoma protein-binding zinc finger protein i...    27   6.4  
gi|118918413 MICAL C-terminal like [Homo sapiens]                      27   6.4  
gi|122937219 F-box protein 41 [Homo sapiens]                           27   6.4  
gi|33354279 hypothetical protein LOC55425 [Homo sapiens]               27   6.4  
gi|109389365 glucose-6-phosphate dehydrogenase isoform a [Homo s...    26   8.4  
gi|224586884 cold shock domain protein A isoform b [Homo sapiens]      26   8.4  

>gi|239745250 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 134

 Score =  276 bits (705), Expect = 5e-75
 Identities = 134/134 (100%), Positives = 134/134 (100%)

Query: 1   MSGKLLNQKEEVITLRSKYKFKGKREPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQ 60
           MSGKLLNQKEEVITLRSKYKFKGKREPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQ
Sbjct: 1   MSGKLLNQKEEVITLRSKYKFKGKREPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQ 60

Query: 61  RPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSD 120
           RPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSD
Sbjct: 61  RPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSD 120

Query: 121 QDTVLVHILGGADV 134
           QDTVLVHILGGADV
Sbjct: 121 QDTVLVHILGGADV 134


>gi|239750887 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 111

 Score =  228 bits (581), Expect = 1e-60
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 26  EPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP 85
           EPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP
Sbjct: 3   EPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP 62

Query: 86  AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 134
           AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV
Sbjct: 63  AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 111


>gi|239756362 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 111

 Score =  226 bits (575), Expect = 6e-60
 Identities = 108/109 (99%), Positives = 108/109 (99%)

Query: 26  EPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP 85
           EPGCSTLTVRLGRRGSGSVRGAELRGS RAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP
Sbjct: 3   EPGCSTLTVRLGRRGSGSVRGAELRGSSRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP 62

Query: 86  AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 134
           AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV
Sbjct: 63  AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 111


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 29.6 bits (65), Expect = 0.76
 Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 9/124 (7%)

Query: 8   QKEEVITLRS--KYKFKGKREPGCSTLTVRLGRRGSGSVRG---AELRGSGRAGRVCQRP 62
           QK  V+ ++S  K + +GK+             RG G  +G   A+ RG GR     Q P
Sbjct: 348 QKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGGDKKGLREAKRRGDGRKKPRWQNP 407

Query: 63  LLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWT---QRPRER-SRGQQETANAEAQ 118
                     K   GG  KP R          G   +   ++PR R  + +Q+ A A A+
Sbjct: 408 RRRAQKAPAAKPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAE 467

Query: 119 SDQD 122
           S  D
Sbjct: 468 SRGD 471


>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform a [Homo sapiens]
          Length = 1590

 Score = 29.3 bits (64), Expect = 0.99
 Identities = 16/56 (28%), Positives = 26/56 (46%)

Query: 72  QKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVH 127
           Q A  G +  PG   Q QQ   +  Q  Q+ +++ + QQ+    + Q  Q   LV+
Sbjct: 203 QLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVN 258


>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform b [Homo sapiens]
          Length = 1572

 Score = 29.3 bits (64), Expect = 0.99
 Identities = 16/56 (28%), Positives = 26/56 (46%)

Query: 72  QKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVH 127
           Q A  G +  PG   Q QQ   +  Q  Q+ +++ + QQ+    + Q  Q   LV+
Sbjct: 203 QLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVN 258


>gi|28372505 chromobox homolog 7 [Homo sapiens]
          Length = 251

 Score = 28.5 bits (62), Expect = 1.7
 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 4   KLLNQKEEVITLRSKYKFKGKREPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPL 63
           +LL Q+   + LRS +K KGK E  C +LT  L   GSGS  G    G+     V + PL
Sbjct: 78  RLLLQRLYSMDLRSSHKAKGK-EKLCFSLTCPL---GSGSPEGVVKAGAPEL--VDKGPL 131

Query: 64  LP 65
           +P
Sbjct: 132 VP 133


>gi|223890252 glutamate receptor interacting protein 1 [Homo
           sapiens]
          Length = 1076

 Score = 28.1 bits (61), Expect = 2.2
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 5   LLNQKEEVITLRSKYKFKGKREPGCSTL--TVRLGRRGSGSVRGAELRGSGRAGRVCQRP 62
           LL    E + L  +Y+       G S +  TV +     G+  G  +RG     R   RP
Sbjct: 120 LLKNVGERVVLEVEYELPPVSVQGSSVIFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRP 179

Query: 63  LLPVSVGIFQKAEHGGQVKPG 83
           ++   V     A+  G +KPG
Sbjct: 180 VVITCVRPGGPADREGTIKPG 200


>gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 219

 Score = 28.1 bits (61), Expect = 2.2
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 13/74 (17%)

Query: 24  KREPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVG-----------IFQ 72
           ++ PG  T   R  R G  + R    RG GR  +  + PLL   +G           +  
Sbjct: 145 RQRPGAGTAAARASRAGPRASRRG--RGRGRGLQAARPPLLAFCLGREFSSGFFSPLLIP 202

Query: 73  KAEHGGQVKPGRPA 86
           +A+ G      RPA
Sbjct: 203 RAQFGAHASTRRPA 216


>gi|239748046 PREDICTED: hypothetical protein XP_002346501 [Homo
           sapiens]
          Length = 411

 Score = 28.1 bits (61), Expect = 2.2
 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 39  RGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQW 98
           RG G +RG E    G  G  C R L    VG   +    G  + G  + WQQ   EG   
Sbjct: 193 RGLGGLRGLECSRLGWGGGRCVRVLRASCVG--PRGPGCGHCQVGSSSLWQQ-HEEGS-- 247

Query: 99  TQRPRERSRGQQETANAEAQSDQDTVLVHI 128
            Q   E +    +   AEA+   D  L  I
Sbjct: 248 LQEAAEAAECSHQPVGAEARVCADHTLEDI 277


>gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo
           sapiens]
          Length = 219

 Score = 28.1 bits (61), Expect = 2.2
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 13/74 (17%)

Query: 24  KREPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVG-----------IFQ 72
           ++ PG  T   R  R G  + R    RG GR  +  + PLL   +G           +  
Sbjct: 145 RQRPGAGTAAARASRAGPRASRRG--RGRGRGLQAARPPLLAFCLGREFSSGFFSPLLIP 202

Query: 73  KAEHGGQVKPGRPA 86
           +A+ G      RPA
Sbjct: 203 RAQFGAHASTRRPA 216


>gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo
           sapiens]
          Length = 219

 Score = 28.1 bits (61), Expect = 2.2
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 13/74 (17%)

Query: 24  KREPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVG-----------IFQ 72
           ++ PG  T   R  R G  + R    RG GR  +  + PLL   +G           +  
Sbjct: 145 RQRPGAGTAAARASRAGPRASRRG--RGRGRGLQAARPPLLAFCLGREFSSGFFSPLLIP 202

Query: 73  KAEHGGQVKPGRPA 86
           +A+ G      RPA
Sbjct: 203 RAQFGAHASTRRPA 216


>gi|169180010 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 219

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 101 RPRERSRGQQETANAEAQSDQDTVLVHI 128
           +PRE S+G Q  AN     D D  L+++
Sbjct: 150 KPREESQGAQHRANLRVYRDADPFLINV 177


>gi|169178954 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 219

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 101 RPRERSRGQQETANAEAQSDQDTVLVHI 128
           +PRE S+G Q  AN     D D  L+++
Sbjct: 150 KPREESQGAQHRANLRVYRDADPFLINV 177


>gi|169176365 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 219

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 101 RPRERSRGQQETANAEAQSDQDTVLVHI 128
           +PRE S+G Q  AN     D D  L+++
Sbjct: 150 KPREESQGAQHRANLRVYRDADPFLINV 177


>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
           sapiens]
          Length = 898

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 40  GSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWT 99
           G G   G+   GS   G     P+ P   G  +K  HGGQ KP   + +Q    +   + 
Sbjct: 707 GGGGGGGSSGYGSYYQGDNYNSPVPPKHAG--KKQPHGGQQKPSYGSGYQSHQGQQQSYN 764

Query: 100 QRP 102
           Q P
Sbjct: 765 QSP 767


>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
           sapiens]
          Length = 894

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 40  GSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWT 99
           G G   G+   GS   G     P+ P   G  +K  HGGQ KP   + +Q    +   + 
Sbjct: 703 GGGGGGGSSGYGSYYQGDNYNSPVPPKHAG--KKQPHGGQQKPSYGSGYQSHQGQQQSYN 760

Query: 100 QRP 102
           Q P
Sbjct: 761 QSP 763


>gi|32490567 relaxin 3 receptor 2 [Homo sapiens]
          Length = 374

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 90  QLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHI 128
           +LWP+G  W Q+   +  G++  A+   +S   T+L ++
Sbjct: 330 RLWPQGGGWVQQVALKQVGRRWVASNPRESRPSTLLTNL 368


>gi|163644283 proteasome (prosome, macropain) activator subunit 4
           [Homo sapiens]
          Length = 1843

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 83  GRPAQWQQLWPEGHQWTQR 101
           GR  Q Q+LWP G  WT++
Sbjct: 60  GRAVQLQELWPGGLFWTRK 78


>gi|26051240 tumor necrosis factor, alpha-induced protein 2 [Homo
           sapiens]
          Length = 654

 Score = 26.9 bits (58), Expect = 4.9
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 84  RPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHI 128
           RP +W QLW  G        E   GQ+  A AE     ++V +H+
Sbjct: 182 RPRRWLQLWRRG---VAEAAEERMGQRPAAGAEV---PESVFLHL 220


>gi|221219020 NYD-SP11 protein [Homo sapiens]
          Length = 2873

 Score = 26.6 bits (57), Expect = 6.4
 Identities = 13/55 (23%), Positives = 29/55 (52%)

Query: 68   VGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQD 122
            V + ++    G+ K  +  + Q+   E H+W +  R+R+R +++ A  E +  Q+
Sbjct: 1544 VTLEEEVSREGEEKEQQVTEEQRHIQEEHKWARIHRKRARAEKKRAQEERKLAQE 1598


>gi|237757312 synaptojanin 1 isoform c [Homo sapiens]
          Length = 1295

 Score = 26.6 bits (57), Expect = 6.4
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 12/92 (13%)

Query: 17   SKYKFKGKREPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEH 76
            ++ +F   + PG +T    +GR       G  L G G AG    RP +P   G+    + 
Sbjct: 1138 TRKEFGAPKSPG-TTRKDNIGRSQPSPQAG--LAGPGPAGYSTARPTIPPRAGVISAPQS 1194

Query: 77   GGQVKPGRPAQWQQLWPEGHQWTQRPRERSRG 108
              +   GR      L PE    T    E S+G
Sbjct: 1195 HARASAGR------LTPESQSKTS---ETSKG 1217


>gi|55953110 retinoblastoma protein-binding zinc finger protein
           isoform c [Homo sapiens]
          Length = 1481

 Score = 26.6 bits (57), Expect = 6.4
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 48  ELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQL 91
           E   S     VC +  L +S G+ QKAE  G+     P QW+ +
Sbjct: 607 EWTASSAFSSVCNQQPLDLSSGVKQKAEGTGKT----PVQWESV 646


>gi|20336260 retinoblastoma protein-binding zinc finger protein
           isoform b [Homo sapiens]
          Length = 1682

 Score = 26.6 bits (57), Expect = 6.4
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 48  ELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQL 91
           E   S     VC +  L +S G+ QKAE  G+     P QW+ +
Sbjct: 808 EWTASSAFSSVCNQQPLDLSSGVKQKAEGTGKT----PVQWESV 847


>gi|20336258 retinoblastoma protein-binding zinc finger protein
           isoform a [Homo sapiens]
          Length = 1718

 Score = 26.6 bits (57), Expect = 6.4
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 48  ELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQL 91
           E   S     VC +  L +S G+ QKAE  G+     P QW+ +
Sbjct: 808 EWTASSAFSSVCNQQPLDLSSGVKQKAEGTGKT----PVQWESV 847


>gi|118918413 MICAL C-terminal like [Homo sapiens]
          Length = 695

 Score = 26.6 bits (57), Expect = 6.4
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 52  SGRAGRVCQ--RPLL-PVSVGIFQKAEHGGQVKPGRPAQWQQ 90
           +GR GRV +  RPLL P + G     + G Q K G PA+  Q
Sbjct: 217 NGRGGRVLKPVRPLLLPRAAGEPLPTQRGAQEKMGTPAEQAQ 258


>gi|122937219 F-box protein 41 [Homo sapiens]
          Length = 936

 Score = 26.6 bits (57), Expect = 6.4
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 30  STLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPG 83
           ST +  LGR G G   G   RG GR       P +P +  +   + HG     G
Sbjct: 413 STPSASLGRGGGGGGAGPNARGPGRMREHHVGPAVPNTYAV---SRHGSSPSTG 463


>gi|33354279 hypothetical protein LOC55425 [Homo sapiens]
          Length = 340

 Score = 26.6 bits (57), Expect = 6.4
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 98  WTQRPRERSRGQQETANAEAQSDQDTVLVHILGGAD 133
           WT  P +R R  +ET  A   S +     HIL G D
Sbjct: 223 WTDTPADRERKAKETQEARKSSSKKDE-EHILSGRD 257


>gi|109389365 glucose-6-phosphate dehydrogenase isoform a [Homo
          sapiens]
          Length = 545

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 36 LGRRGSGSVRGAELRGSGRAGR 57
          +GRRGS    G  LRG  R GR
Sbjct: 1  MGRRGSAPGNGRTLRGCERGGR 22


>gi|224586884 cold shock domain protein A isoform b [Homo sapiens]
          Length = 303

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 16/45 (35%), Positives = 20/45 (44%)

Query: 78  GQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQD 122
           G++K G P   Q   P     T RPR RSRG      A A  + +
Sbjct: 196 GEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAE 240


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,811,671
Number of Sequences: 37866
Number of extensions: 286872
Number of successful extensions: 1004
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 990
Number of HSP's gapped (non-prelim): 31
length of query: 134
length of database: 18,247,518
effective HSP length: 91
effective length of query: 43
effective length of database: 14,801,712
effective search space: 636473616
effective search space used: 636473616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press