BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239745250 PREDICTED: hypothetical protein [Homo sapiens] (134 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239745250 PREDICTED: hypothetical protein [Homo sapiens] 276 5e-75 gi|239750887 PREDICTED: hypothetical protein [Homo sapiens] 228 1e-60 gi|239756362 PREDICTED: hypothetical protein [Homo sapiens] 226 6e-60 gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 30 0.76 gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 29 0.99 gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 29 0.99 gi|28372505 chromobox homolog 7 [Homo sapiens] 28 1.7 gi|223890252 glutamate receptor interacting protein 1 [Homo sapi... 28 2.2 gi|239753405 PREDICTED: hypothetical protein [Homo sapiens] 28 2.2 gi|239748046 PREDICTED: hypothetical protein XP_002346501 [Homo ... 28 2.2 gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo ... 28 2.2 gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo ... 28 2.2 gi|169180010 PREDICTED: hypothetical protein [Homo sapiens] 28 2.9 gi|169178954 PREDICTED: hypothetical protein [Homo sapiens] 28 2.9 gi|169176365 PREDICTED: hypothetical protein [Homo sapiens] 28 2.9 gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho... 27 3.8 gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom... 27 3.8 gi|32490567 relaxin 3 receptor 2 [Homo sapiens] 27 3.8 gi|163644283 proteasome (prosome, macropain) activator subunit 4... 27 3.8 gi|26051240 tumor necrosis factor, alpha-induced protein 2 [Homo... 27 4.9 gi|221219020 NYD-SP11 protein [Homo sapiens] 27 6.4 gi|237757312 synaptojanin 1 isoform c [Homo sapiens] 27 6.4 gi|55953110 retinoblastoma protein-binding zinc finger protein i... 27 6.4 gi|20336260 retinoblastoma protein-binding zinc finger protein i... 27 6.4 gi|20336258 retinoblastoma protein-binding zinc finger protein i... 27 6.4 gi|118918413 MICAL C-terminal like [Homo sapiens] 27 6.4 gi|122937219 F-box protein 41 [Homo sapiens] 27 6.4 gi|33354279 hypothetical protein LOC55425 [Homo sapiens] 27 6.4 gi|109389365 glucose-6-phosphate dehydrogenase isoform a [Homo s... 26 8.4 gi|224586884 cold shock domain protein A isoform b [Homo sapiens] 26 8.4 >gi|239745250 PREDICTED: hypothetical protein [Homo sapiens] Length = 134 Score = 276 bits (705), Expect = 5e-75 Identities = 134/134 (100%), Positives = 134/134 (100%) Query: 1 MSGKLLNQKEEVITLRSKYKFKGKREPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQ 60 MSGKLLNQKEEVITLRSKYKFKGKREPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQ Sbjct: 1 MSGKLLNQKEEVITLRSKYKFKGKREPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQ 60 Query: 61 RPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSD 120 RPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSD Sbjct: 61 RPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSD 120 Query: 121 QDTVLVHILGGADV 134 QDTVLVHILGGADV Sbjct: 121 QDTVLVHILGGADV 134 >gi|239750887 PREDICTED: hypothetical protein [Homo sapiens] Length = 111 Score = 228 bits (581), Expect = 1e-60 Identities = 109/109 (100%), Positives = 109/109 (100%) Query: 26 EPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP 85 EPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP Sbjct: 3 EPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP 62 Query: 86 AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 134 AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV Sbjct: 63 AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 111 >gi|239756362 PREDICTED: hypothetical protein [Homo sapiens] Length = 111 Score = 226 bits (575), Expect = 6e-60 Identities = 108/109 (99%), Positives = 108/109 (99%) Query: 26 EPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP 85 EPGCSTLTVRLGRRGSGSVRGAELRGS RAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP Sbjct: 3 EPGCSTLTVRLGRRGSGSVRGAELRGSSRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP 62 Query: 86 AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 134 AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV Sbjct: 63 AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 111 >gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] Length = 819 Score = 29.6 bits (65), Expect = 0.76 Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 9/124 (7%) Query: 8 QKEEVITLRS--KYKFKGKREPGCSTLTVRLGRRGSGSVRG---AELRGSGRAGRVCQRP 62 QK V+ ++S K + +GK+ RG G +G A+ RG GR Q P Sbjct: 348 QKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGGDKKGLREAKRRGDGRKKPRWQNP 407 Query: 63 LLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWT---QRPRER-SRGQQETANAEAQ 118 K GG KP R G + ++PR R + +Q+ A A A+ Sbjct: 408 RRRAQKAPAAKPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAE 467 Query: 119 SDQD 122 S D Sbjct: 468 SRGD 471 >gi|48255900 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a2 isoform a [Homo sapiens] Length = 1590 Score = 29.3 bits (64), Expect = 0.99 Identities = 16/56 (28%), Positives = 26/56 (46%) Query: 72 QKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVH 127 Q A G + PG Q QQ + Q Q+ +++ + QQ+ + Q Q LV+ Sbjct: 203 QLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVN 258 >gi|48255898 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a2 isoform b [Homo sapiens] Length = 1572 Score = 29.3 bits (64), Expect = 0.99 Identities = 16/56 (28%), Positives = 26/56 (46%) Query: 72 QKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVH 127 Q A G + PG Q QQ + Q Q+ +++ + QQ+ + Q Q LV+ Sbjct: 203 QLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVN 258 >gi|28372505 chromobox homolog 7 [Homo sapiens] Length = 251 Score = 28.5 bits (62), Expect = 1.7 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Query: 4 KLLNQKEEVITLRSKYKFKGKREPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPL 63 +LL Q+ + LRS +K KGK E C +LT L GSGS G G+ V + PL Sbjct: 78 RLLLQRLYSMDLRSSHKAKGK-EKLCFSLTCPL---GSGSPEGVVKAGAPEL--VDKGPL 131 Query: 64 LP 65 +P Sbjct: 132 VP 133 >gi|223890252 glutamate receptor interacting protein 1 [Homo sapiens] Length = 1076 Score = 28.1 bits (61), Expect = 2.2 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Query: 5 LLNQKEEVITLRSKYKFKGKREPGCSTL--TVRLGRRGSGSVRGAELRGSGRAGRVCQRP 62 LL E + L +Y+ G S + TV + G+ G +RG R RP Sbjct: 120 LLKNVGERVVLEVEYELPPVSVQGSSVIFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRP 179 Query: 63 LLPVSVGIFQKAEHGGQVKPG 83 ++ V A+ G +KPG Sbjct: 180 VVITCVRPGGPADREGTIKPG 200 >gi|239753405 PREDICTED: hypothetical protein [Homo sapiens] Length = 219 Score = 28.1 bits (61), Expect = 2.2 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 13/74 (17%) Query: 24 KREPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVG-----------IFQ 72 ++ PG T R R G + R RG GR + + PLL +G + Sbjct: 145 RQRPGAGTAAARASRAGPRASRRG--RGRGRGLQAARPPLLAFCLGREFSSGFFSPLLIP 202 Query: 73 KAEHGGQVKPGRPA 86 +A+ G RPA Sbjct: 203 RAQFGAHASTRRPA 216 >gi|239748046 PREDICTED: hypothetical protein XP_002346501 [Homo sapiens] Length = 411 Score = 28.1 bits (61), Expect = 2.2 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 39 RGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQW 98 RG G +RG E G G C R L VG + G + G + WQQ EG Sbjct: 193 RGLGGLRGLECSRLGWGGGRCVRVLRASCVG--PRGPGCGHCQVGSSSLWQQ-HEEGS-- 247 Query: 99 TQRPRERSRGQQETANAEAQSDQDTVLVHI 128 Q E + + AEA+ D L I Sbjct: 248 LQEAAEAAECSHQPVGAEARVCADHTLEDI 277 >gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo sapiens] Length = 219 Score = 28.1 bits (61), Expect = 2.2 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 13/74 (17%) Query: 24 KREPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVG-----------IFQ 72 ++ PG T R R G + R RG GR + + PLL +G + Sbjct: 145 RQRPGAGTAAARASRAGPRASRRG--RGRGRGLQAARPPLLAFCLGREFSSGFFSPLLIP 202 Query: 73 KAEHGGQVKPGRPA 86 +A+ G RPA Sbjct: 203 RAQFGAHASTRRPA 216 >gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo sapiens] Length = 219 Score = 28.1 bits (61), Expect = 2.2 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 13/74 (17%) Query: 24 KREPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVG-----------IFQ 72 ++ PG T R R G + R RG GR + + PLL +G + Sbjct: 145 RQRPGAGTAAARASRAGPRASRRG--RGRGRGLQAARPPLLAFCLGREFSSGFFSPLLIP 202 Query: 73 KAEHGGQVKPGRPA 86 +A+ G RPA Sbjct: 203 RAQFGAHASTRRPA 216 >gi|169180010 PREDICTED: hypothetical protein [Homo sapiens] Length = 219 Score = 27.7 bits (60), Expect = 2.9 Identities = 11/28 (39%), Positives = 16/28 (57%) Query: 101 RPRERSRGQQETANAEAQSDQDTVLVHI 128 +PRE S+G Q AN D D L+++ Sbjct: 150 KPREESQGAQHRANLRVYRDADPFLINV 177 >gi|169178954 PREDICTED: hypothetical protein [Homo sapiens] Length = 219 Score = 27.7 bits (60), Expect = 2.9 Identities = 11/28 (39%), Positives = 16/28 (57%) Query: 101 RPRERSRGQQETANAEAQSDQDTVLVHI 128 +PRE S+G Q AN D D L+++ Sbjct: 150 KPREESQGAQHRANLRVYRDADPFLINV 177 >gi|169176365 PREDICTED: hypothetical protein [Homo sapiens] Length = 219 Score = 27.7 bits (60), Expect = 2.9 Identities = 11/28 (39%), Positives = 16/28 (57%) Query: 101 RPRERSRGQQETANAEAQSDQDTVLVHI 128 +PRE S+G Q AN D D L+++ Sbjct: 150 KPREESQGAQHRANLRVYRDADPFLINV 177 >gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo sapiens] Length = 898 Score = 27.3 bits (59), Expect = 3.8 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 40 GSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWT 99 G G G+ GS G P+ P G +K HGGQ KP + +Q + + Sbjct: 707 GGGGGGGSSGYGSYYQGDNYNSPVPPKHAG--KKQPHGGQQKPSYGSGYQSHQGQQQSYN 764 Query: 100 QRP 102 Q P Sbjct: 765 QSP 767 >gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo sapiens] Length = 894 Score = 27.3 bits (59), Expect = 3.8 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 40 GSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWT 99 G G G+ GS G P+ P G +K HGGQ KP + +Q + + Sbjct: 703 GGGGGGGSSGYGSYYQGDNYNSPVPPKHAG--KKQPHGGQQKPSYGSGYQSHQGQQQSYN 760 Query: 100 QRP 102 Q P Sbjct: 761 QSP 763 >gi|32490567 relaxin 3 receptor 2 [Homo sapiens] Length = 374 Score = 27.3 bits (59), Expect = 3.8 Identities = 11/39 (28%), Positives = 22/39 (56%) Query: 90 QLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHI 128 +LWP+G W Q+ + G++ A+ +S T+L ++ Sbjct: 330 RLWPQGGGWVQQVALKQVGRRWVASNPRESRPSTLLTNL 368 >gi|163644283 proteasome (prosome, macropain) activator subunit 4 [Homo sapiens] Length = 1843 Score = 27.3 bits (59), Expect = 3.8 Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 83 GRPAQWQQLWPEGHQWTQR 101 GR Q Q+LWP G WT++ Sbjct: 60 GRAVQLQELWPGGLFWTRK 78 >gi|26051240 tumor necrosis factor, alpha-induced protein 2 [Homo sapiens] Length = 654 Score = 26.9 bits (58), Expect = 4.9 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%) Query: 84 RPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHI 128 RP +W QLW G E GQ+ A AE ++V +H+ Sbjct: 182 RPRRWLQLWRRG---VAEAAEERMGQRPAAGAEV---PESVFLHL 220 >gi|221219020 NYD-SP11 protein [Homo sapiens] Length = 2873 Score = 26.6 bits (57), Expect = 6.4 Identities = 13/55 (23%), Positives = 29/55 (52%) Query: 68 VGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQD 122 V + ++ G+ K + + Q+ E H+W + R+R+R +++ A E + Q+ Sbjct: 1544 VTLEEEVSREGEEKEQQVTEEQRHIQEEHKWARIHRKRARAEKKRAQEERKLAQE 1598 >gi|237757312 synaptojanin 1 isoform c [Homo sapiens] Length = 1295 Score = 26.6 bits (57), Expect = 6.4 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 12/92 (13%) Query: 17 SKYKFKGKREPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEH 76 ++ +F + PG +T +GR G L G G AG RP +P G+ + Sbjct: 1138 TRKEFGAPKSPG-TTRKDNIGRSQPSPQAG--LAGPGPAGYSTARPTIPPRAGVISAPQS 1194 Query: 77 GGQVKPGRPAQWQQLWPEGHQWTQRPRERSRG 108 + GR L PE T E S+G Sbjct: 1195 HARASAGR------LTPESQSKTS---ETSKG 1217 >gi|55953110 retinoblastoma protein-binding zinc finger protein isoform c [Homo sapiens] Length = 1481 Score = 26.6 bits (57), Expect = 6.4 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%) Query: 48 ELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQL 91 E S VC + L +S G+ QKAE G+ P QW+ + Sbjct: 607 EWTASSAFSSVCNQQPLDLSSGVKQKAEGTGKT----PVQWESV 646 >gi|20336260 retinoblastoma protein-binding zinc finger protein isoform b [Homo sapiens] Length = 1682 Score = 26.6 bits (57), Expect = 6.4 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%) Query: 48 ELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQL 91 E S VC + L +S G+ QKAE G+ P QW+ + Sbjct: 808 EWTASSAFSSVCNQQPLDLSSGVKQKAEGTGKT----PVQWESV 847 >gi|20336258 retinoblastoma protein-binding zinc finger protein isoform a [Homo sapiens] Length = 1718 Score = 26.6 bits (57), Expect = 6.4 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%) Query: 48 ELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQL 91 E S VC + L +S G+ QKAE G+ P QW+ + Sbjct: 808 EWTASSAFSSVCNQQPLDLSSGVKQKAEGTGKT----PVQWESV 847 >gi|118918413 MICAL C-terminal like [Homo sapiens] Length = 695 Score = 26.6 bits (57), Expect = 6.4 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Query: 52 SGRAGRVCQ--RPLL-PVSVGIFQKAEHGGQVKPGRPAQWQQ 90 +GR GRV + RPLL P + G + G Q K G PA+ Q Sbjct: 217 NGRGGRVLKPVRPLLLPRAAGEPLPTQRGAQEKMGTPAEQAQ 258 >gi|122937219 F-box protein 41 [Homo sapiens] Length = 936 Score = 26.6 bits (57), Expect = 6.4 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%) Query: 30 STLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPG 83 ST + LGR G G G RG GR P +P + + + HG G Sbjct: 413 STPSASLGRGGGGGGAGPNARGPGRMREHHVGPAVPNTYAV---SRHGSSPSTG 463 >gi|33354279 hypothetical protein LOC55425 [Homo sapiens] Length = 340 Score = 26.6 bits (57), Expect = 6.4 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 98 WTQRPRERSRGQQETANAEAQSDQDTVLVHILGGAD 133 WT P +R R +ET A S + HIL G D Sbjct: 223 WTDTPADRERKAKETQEARKSSSKKDE-EHILSGRD 257 >gi|109389365 glucose-6-phosphate dehydrogenase isoform a [Homo sapiens] Length = 545 Score = 26.2 bits (56), Expect = 8.4 Identities = 12/22 (54%), Positives = 13/22 (59%) Query: 36 LGRRGSGSVRGAELRGSGRAGR 57 +GRRGS G LRG R GR Sbjct: 1 MGRRGSAPGNGRTLRGCERGGR 22 >gi|224586884 cold shock domain protein A isoform b [Homo sapiens] Length = 303 Score = 26.2 bits (56), Expect = 8.4 Identities = 16/45 (35%), Positives = 20/45 (44%) Query: 78 GQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQD 122 G++K G P Q P T RPR RSRG A A + + Sbjct: 196 GEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAE 240 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.315 0.133 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,811,671 Number of Sequences: 37866 Number of extensions: 286872 Number of successful extensions: 1004 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 17 Number of HSP's that attempted gapping in prelim test: 990 Number of HSP's gapped (non-prelim): 31 length of query: 134 length of database: 18,247,518 effective HSP length: 91 effective length of query: 43 effective length of database: 14,801,712 effective search space: 636473616 effective search space used: 636473616 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.