Guide to the Human Genome
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Name: LOC729911 Sequence: fasta or formatted (111aa) NCBI GI: 239750887
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {134aa} PREDICTED: hypothetical protein
alt prot {111aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1          9           1
 C cysteine            1.8          2           1
 D aspartate           2.7          3           1
 E glutamate           6.3          7           1
 F phenylalanine       0.9          1           1
 G glycine            14.4         16           2
 H histidine           2.7          3           1
 I isoleucine          1.8          2           1
 K lysine              1.8          2           1
 L leucine             7.2          8           2
 M methionine          0.9          1           1
 N asparagine          0.9          1           1
 P proline             6.3          7           1
 Q glutamine          10.8         12           2
 R arginine           11.7         13           2
 S serine              6.3          7           1
 T threonine           4.5          5           1
 V valine              8.1          9           1
 W tryptophan          2.7          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729911             0.990   PREDICTED: hypothetical protein 
LOC729911             0.985   PREDICTED: hypothetical protein 
SMARCA2               0.019   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.019   SWI/SNF-related matrix-associated actin-dependent re...
LOC100290951          0.015   PREDICTED: hypothetical protein XP_002346501 
LOC100131540          0.015   PREDICTED: hypothetical protein 
LOC100131540          0.015   PREDICTED: hypothetical protein 
LOC100131540          0.015   PREDICTED: hypothetical protein 
ILF3                  0.010   interleukin enhancer binding factor 3 isoform d [Ho...
ILF3                  0.010   interleukin enhancer binding factor 3 isoform a [Hom...
RXFP4                 0.010   relaxin 3 receptor 2 
PSME4                 0.010   proteasome (prosome, macropain) activator subunit 4...
LOC100292736          0.010   PREDICTED: similar to hCG1996962 
LOC100293212          0.010   PREDICTED: hypothetical protein 
LOC100289796          0.010   PREDICTED: hypothetical protein XP_002346485 
LOC100288812          0.010   PREDICTED: hypothetical protein XP_002342329 
TNFAIP2               0.010   tumor necrosis factor, alpha-induced protein 2 [Homo...
WDR87                 0.010   NYD-SP11 protein 
PRDM2                 0.010   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.010   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.010   retinoblastoma protein-binding zinc finger protein i...
MICALCL               0.010   MICAL C-terminal like 
FBXO41                0.010   F-box protein 41 
KIAA1704              0.010   hypothetical protein LOC55425 
G6PD                  0.005   glucose-6-phosphate dehydrogenase isoform a 
LOC100292370          0.005   PREDICTED: hypothetical protein 
CSDA                  0.005   cold shock domain protein A isoform b 
CSDA                  0.005   cold shock domain protein A isoform a 
JAG1                  0.005   jagged 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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