Guide to the Human Genome
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Name: LOC729911 Sequence: fasta or formatted (134aa) NCBI GI: 239745250
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {111aa} PREDICTED: hypothetical protein
alt prot {111aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0          8           1
 C cysteine            1.5          2           1
 D aspartate           2.2          3           1
 E glutamate           6.7          9           2
 F phenylalanine       1.5          2           1
 G glycine            13.4         18           2
 H histidine           2.2          3           1
 I isoleucine          2.2          3           1
 K lysine              6.0          8           1
 L leucine             8.2         11           2
 M methionine          0.7          1           1
 N asparagine          1.5          2           1
 P proline             5.2          7           1
 Q glutamine           9.7         13           2
 R arginine           11.2         15           2
 S serine              6.7          9           1
 T threonine           4.5          6           1
 V valine              7.5         10           1
 W tryptophan          2.2          3           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729911             0.809   PREDICTED: hypothetical protein 
LOC729911             0.801   PREDICTED: hypothetical protein 
LOC100292370          0.020   PREDICTED: hypothetical protein 
SMARCA2               0.016   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.016   SWI/SNF-related matrix-associated actin-dependent re...
CBX7                  0.012   chromobox homolog 7 
GRIP1                 0.012   glutamate receptor interacting protein 1 
LOC100293212          0.012   PREDICTED: hypothetical protein 
LOC100290951          0.012   PREDICTED: hypothetical protein XP_002346501 
LOC100289796          0.012   PREDICTED: hypothetical protein XP_002346485 
LOC100288812          0.012   PREDICTED: hypothetical protein XP_002342329 
LOC100131540          0.012   PREDICTED: hypothetical protein 
LOC100131540          0.012   PREDICTED: hypothetical protein 
LOC100131540          0.012   PREDICTED: hypothetical protein 
ILF3                  0.008   interleukin enhancer binding factor 3 isoform d [Ho...
ILF3                  0.008   interleukin enhancer binding factor 3 isoform a [Hom...
RXFP4                 0.008   relaxin 3 receptor 2 
PSME4                 0.008   proteasome (prosome, macropain) activator subunit 4...
TNFAIP2               0.008   tumor necrosis factor, alpha-induced protein 2 [Homo...
WDR87                 0.008   NYD-SP11 protein 
SYNJ1                 0.008   synaptojanin 1 isoform c 
PRDM2                 0.008   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.008   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.008   retinoblastoma protein-binding zinc finger protein i...
MICALCL               0.008   MICAL C-terminal like 
FBXO41                0.008   F-box protein 41 
KIAA1704              0.008   hypothetical protein LOC55425 
G6PD                  0.004   glucose-6-phosphate dehydrogenase isoform a 
CSDA                  0.004   cold shock domain protein A isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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