Guide to the Human Genome
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Name: LOC100131540 Sequence: fasta or formatted (219aa) NCBI GI: 169178954
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {219aa} PREDICTED: hypothetical protein
alt prot {219aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         15           2
 C cysteine            3.7          8           1
 D aspartate           2.7          6           1
 E glutamate           2.3          5           2
 F phenylalanine       5.0         11           2
 G glycine             2.3          5           1
 H histidine           5.5         12           1
 I isoleucine          5.0         11           1
 K lysine              3.7          8           1
 L leucine            15.1         33           3
 M methionine          2.7          6           1
 N asparagine          3.2          7           1
 P proline            10.5         23           4
 Q glutamine           4.1          9           1
 R arginine            3.7          8           1
 S serine              9.1         20           2
 T threonine           2.7          6           1
 V valine              5.5         12           1
 W tryptophan          2.3          5           1
 Y tyrosine            4.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131540          0.998   PREDICTED: hypothetical protein 
LOC100131540          0.998   PREDICTED: hypothetical protein 
LOC377711             0.018   PREDICTED: hypothetical protein LOC377711 isoform 5...
HEATR7A               0.018   HEAT repeat containing 7A isoform 1 
MGAT3                 0.016   mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetyl...
MGAT3                 0.016   mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetyl...
LOC100289830          0.009   PREDICTED: hypothetical protein XP_002347519 
LOC728597             0.007   PREDICTED: doublecortin domain-containing protein E...
PRDM2                 0.007   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.007   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.007   retinoblastoma protein-binding zinc finger protein i...
LOC100288635          0.007   PREDICTED: hypothetical protein 
LOC100288635          0.007   PREDICTED: hypothetical protein XP_002343184 
ATE1                  0.007   arginyltransferase 1 isoform 1 
UBE4B                 0.007   ubiquitination factor E4B isoform 1 
DENND4B               0.007   DENN/MADD domain containing 4B 
LOC729911             0.007   PREDICTED: hypothetical protein 
LOC729911             0.007   PREDICTED: hypothetical protein 
LOC729911             0.007   PREDICTED: hypothetical protein 
MAP1A                 0.007   microtubule-associated protein 1A 
CYBRD1                0.007   cytochrome b reductase 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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