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Search of human proteins with 239745242
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745242 PREDICTED: similar to COMM domain containing 4
[Homo sapiens]
(344 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745242 PREDICTED: similar to COMM domain containing 4 [Hom... 712 0.0
gi|239756356 PREDICTED: similar to hCG1731366 [Homo sapiens] 710 0.0
gi|169209261 PREDICTED: similar to hCG1731366 [Homo sapiens] 586 e-168
gi|21361661 COMM domain containing 4 [Homo sapiens] 242 4e-64
gi|169208214 PREDICTED: similar to COMM domain containing 4 [Hom... 232 3e-61
gi|169208948 PREDICTED: similar to COMM domain containing 4 [Hom... 218 6e-57
gi|160358850 zona pellucida glycoprotein 3 isoform 1 precursor [... 39 0.009
gi|38327649 zona pellucida glycoprotein 3 isoform 2 [Homo sapiens] 39 0.009
gi|169169054 PREDICTED: hypothetical protein [Homo sapiens] 35 0.098
gi|169168706 PREDICTED: hypothetical protein [Homo sapiens] 35 0.098
gi|169169649 PREDICTED: hypothetical protein [Homo sapiens] 35 0.098
gi|60498978 elastin microfibril interfacer 2 [Homo sapiens] 33 0.49
gi|145309320 forkhead box Q1 [Homo sapiens] 32 1.1
gi|239752392 PREDICTED: hypothetical protein XP_002348220 [Homo ... 32 1.1
gi|239746909 PREDICTED: hypothetical protein XP_002343871 [Homo ... 32 1.1
gi|223029422 SKI-like isoform 3 [Homo sapiens] 31 1.8
gi|223029420 SKI-like isoform 2 [Homo sapiens] 31 1.8
gi|223029418 SKI-like isoform 1 [Homo sapiens] 31 1.8
gi|169166639 PREDICTED: hypothetical protein [Homo sapiens] 31 1.8
gi|113416043 PREDICTED: hypothetical protein [Homo sapiens] 31 1.8
gi|113415531 PREDICTED: hypothetical protein [Homo sapiens] 31 1.8
gi|224922812 tropomyosin 2 (beta) isoform 3 [Homo sapiens] 31 1.8
gi|5730021 regulatory solute carrier protein, family 1, member 1... 31 1.8
gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens] 30 2.4
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 30 2.4
gi|38327034 ubiquitination factor E4B isoform 2 [Homo sapiens] 30 3.2
gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens] 30 3.2
gi|56788364 tubulin, gamma complex associated protein 6 [Homo sa... 30 3.2
gi|239757091 PREDICTED: hypothetical protein [Homo sapiens] 30 4.1
gi|239751597 PREDICTED: hypothetical protein XP_002347925 [Homo ... 30 4.1
>gi|239745242 PREDICTED: similar to COMM domain containing 4 [Homo
sapiens]
Length = 344
Score = 712 bits (1837), Expect = 0.0
Identities = 344/344 (100%), Positives = 344/344 (100%)
Query: 1 METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL 60
METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL
Sbjct: 1 METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL 60
Query: 61 HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP 120
HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP
Sbjct: 61 HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP 120
Query: 121 GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS 180
GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS
Sbjct: 121 GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS 180
Query: 181 SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG 240
SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG
Sbjct: 181 SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG 240
Query: 241 ESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRSNLAQRFKASKVQPATQEG 300
ESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRSNLAQRFKASKVQPATQEG
Sbjct: 241 ESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRSNLAQRFKASKVQPATQEG 300
Query: 301 DLAQPDTHQDKGNCDEQEAQDEESHSIAGDKGIQQAGGFGAGSA 344
DLAQPDTHQDKGNCDEQEAQDEESHSIAGDKGIQQAGGFGAGSA
Sbjct: 301 DLAQPDTHQDKGNCDEQEAQDEESHSIAGDKGIQQAGGFGAGSA 344
>gi|239756356 PREDICTED: similar to hCG1731366 [Homo sapiens]
Length = 344
Score = 710 bits (1832), Expect = 0.0
Identities = 343/344 (99%), Positives = 343/344 (99%)
Query: 1 METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL 60
METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL
Sbjct: 1 METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL 60
Query: 61 HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP 120
HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP
Sbjct: 61 HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP 120
Query: 121 GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS 180
GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS
Sbjct: 121 GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS 180
Query: 181 SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG 240
SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG
Sbjct: 181 SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG 240
Query: 241 ESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRSNLAQRFKASKVQPATQEG 300
ESLASELQQLGLPKEHAASLC CYEEKQSPLQKHLRVCSLRSNLAQRFKASKVQPATQEG
Sbjct: 241 ESLASELQQLGLPKEHAASLCHCYEEKQSPLQKHLRVCSLRSNLAQRFKASKVQPATQEG 300
Query: 301 DLAQPDTHQDKGNCDEQEAQDEESHSIAGDKGIQQAGGFGAGSA 344
DLAQPDTHQDKGNCDEQEAQDEESHSIAGDKGIQQAGGFGAGSA
Sbjct: 301 DLAQPDTHQDKGNCDEQEAQDEESHSIAGDKGIQQAGGFGAGSA 344
>gi|169209261 PREDICTED: similar to hCG1731366 [Homo sapiens]
Length = 456
Score = 586 bits (1511), Expect = e-168
Identities = 284/288 (98%), Positives = 286/288 (99%), Gaps = 1/288 (0%)
Query: 1 METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL 60
METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL
Sbjct: 1 METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL 60
Query: 61 HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP 120
HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP
Sbjct: 61 HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP 120
Query: 121 GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS 180
GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS
Sbjct: 121 GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS 180
Query: 181 SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG 240
SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG
Sbjct: 181 SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG 240
Query: 241 ESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRS-NLAQR 287
ESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLR+ +LA R
Sbjct: 241 ESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRTWSLAAR 288
>gi|21361661 COMM domain containing 4 [Homo sapiens]
Length = 199
Score = 242 bits (617), Expect = 4e-64
Identities = 121/128 (94%), Positives = 124/128 (96%)
Query: 156 RFWFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFE 215
RF FCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDY+KILKLTADAKFE
Sbjct: 2 RFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFE 61
Query: 216 SGDVKATVAVLSFMLSGTAKHSVDGESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHL 275
SGDVKATVAVLSF+LS AKHSVDGESL+SELQQLGLPKEHAASLCRCYEEKQSPLQKHL
Sbjct: 62 SGDVKATVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHL 121
Query: 276 RVCSLRSN 283
RVCSLR N
Sbjct: 122 RVCSLRMN 129
>gi|169208214 PREDICTED: similar to COMM domain containing 4 [Homo
sapiens]
Length = 422
Score = 232 bits (592), Expect = 3e-61
Identities = 127/173 (73%), Positives = 138/173 (79%), Gaps = 3/173 (1%)
Query: 109 GRRRRRRQHFAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDW 168
GR+ R++ T + RA + ++ PS + V RF FCGDLDCPD
Sbjct: 3 GRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPS---LSRVGRRFRFCGDLDCPDR 59
Query: 169 VLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSF 228
VLAEISTLAKMSSVKL+LLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSF
Sbjct: 60 VLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSF 119
Query: 229 MLSGTAKHSVDGESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLR 281
+LSG AKHSVDG+SLASELQQLGLPKEHAAS C CYEEKQSPLQKHLRVCSLR
Sbjct: 120 ILSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSLR 172
>gi|169208948 PREDICTED: similar to COMM domain containing 4 [Homo
sapiens]
Length = 437
Score = 218 bits (555), Expect = 6e-57
Identities = 123/181 (67%), Positives = 135/181 (74%), Gaps = 4/181 (2%)
Query: 101 WPVRGKDSGRRRRRRQHFAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFC 160
W GR+ R++ T + RA + ++ PS + + RF FC
Sbjct: 11 WAAGAGMRGRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPS---LSRMGRRFRFC 67
Query: 161 GDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVK 220
GDLDCPD VLAEISTLAKMSSVKL+LLCSQVLKELLGQGID K KLTADAKFESGDVK
Sbjct: 68 GDLDCPDRVLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDVKD-QKLTADAKFESGDVK 126
Query: 221 ATVAVLSFMLSGTAKHSVDGESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSL 280
ATVAVLSF+LSG AKHSVDG+SLASELQQLGLPKEHAAS C CYEEKQSPLQKHLRVCSL
Sbjct: 127 ATVAVLSFILSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSL 186
Query: 281 R 281
R
Sbjct: 187 R 187
>gi|160358850 zona pellucida glycoprotein 3 isoform 1 precursor
[Homo sapiens]
Length = 424
Score = 38.5 bits (88), Expect = 0.009
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 5 LVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLF 42
L+ E+WNA++ P F L D QA+ +T H PLRLF
Sbjct: 176 LMEENWNAEKRSPTFHLGDAAHLQAEIHTGSHVPLRLF 213
>gi|38327649 zona pellucida glycoprotein 3 isoform 2 [Homo sapiens]
Length = 373
Score = 38.5 bits (88), Expect = 0.009
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 5 LVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLF 42
L+ E+WNA++ P F L D QA+ +T H PLRLF
Sbjct: 125 LMEENWNAEKRSPTFHLGDAAHLQAEIHTGSHVPLRLF 162
>gi|169169054 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 35.0 bits (79), Expect = 0.098
Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 24/155 (15%)
Query: 2 ETELVAEDWNAKQVPPAFWLRDILCFQAQTYTCC----HKPLRLFRGPMGSHTHAGPACW 57
+ +L A Q P A R L F AQ H+P +L R +G H H G
Sbjct: 240 QAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEG---- 295
Query: 58 AHLHPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQH 117
HP + P++R + H+ + PL ++G+ SG R R+
Sbjct: 296 ---HPQGQ-------RGPRRRHSG------RRAHLDGAARPPLPEIKGRASGPRNPPRRL 339
Query: 118 FAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDS 152
A + + + G L A PS+V+ DS
Sbjct: 340 KASPSQTRFKGPSGGEECRRGLFSATPPSRVLRDS 374
>gi|169168706 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 35.0 bits (79), Expect = 0.098
Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 24/155 (15%)
Query: 2 ETELVAEDWNAKQVPPAFWLRDILCFQAQTYTCC----HKPLRLFRGPMGSHTHAGPACW 57
+ +L A Q P A R L F AQ H+P +L R +G H H G
Sbjct: 240 QAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEG---- 295
Query: 58 AHLHPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQH 117
HP + P++R + H+ + PL ++G+ SG R R+
Sbjct: 296 ---HPQGQ-------RGPRRRHSG------RRAHLDGAARPPLPEIKGRASGPRNPPRRL 339
Query: 118 FAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDS 152
A + + + G L A PS+V+ DS
Sbjct: 340 KASPSQTRFKGPSGGEECRRGLFSATPPSRVLRDS 374
>gi|169169649 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 35.0 bits (79), Expect = 0.098
Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 24/155 (15%)
Query: 2 ETELVAEDWNAKQVPPAFWLRDILCFQAQTYTCC----HKPLRLFRGPMGSHTHAGPACW 57
+ +L A Q P A R L F AQ H+P +L R +G H H G
Sbjct: 240 QAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEG---- 295
Query: 58 AHLHPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQH 117
HP + P++R + H+ + PL ++G+ SG R R+
Sbjct: 296 ---HPQGQ-------RGPRRRHSG------RRAHLDGAARPPLPEIKGRASGPRNPPRRL 339
Query: 118 FAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDS 152
A + + + G L A PS+V+ DS
Sbjct: 340 KASPSQTRFKGPSGGEECRRGLFSATPPSRVLRDS 374
>gi|60498978 elastin microfibril interfacer 2 [Homo sapiens]
Length = 1053
Score = 32.7 bits (73), Expect = 0.49
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 188 CSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDGESLASEL 247
CSQ+ E Q + + I +L A + G V+ V+++ +S K +S++ L
Sbjct: 667 CSQL--EERWQRLQSQVISELDACKECTQG-VQREVSMVEGRVSHMEKTCSKLDSISGNL 723
Query: 248 QQL--GLPKEHAASLCRCYEEKQSPLQKHLRVCSLRSNLAQRFKASKVQPATQEGDLAQ 304
Q++ GL K H +SL C + L+ H R S N Q+F + Q +T DL +
Sbjct: 724 QRIKEGLNK-HVSSLWNCVRQMNGTLRSHSRDISGLKNSVQQFYSHVFQISTDLQDLVK 781
>gi|145309320 forkhead box Q1 [Homo sapiens]
Length = 403
Score = 31.6 bits (70), Expect = 1.1
Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 110 RRRRRRQHFAPGTSSGLR--SAPGLTRAGPALPEA 142
RRR+R H AP + GLR APGL A P P A
Sbjct: 211 RRRKRLSHRAPVPAPGLRPEEAPGLPAAPPPAPAA 245
>gi|239752392 PREDICTED: hypothetical protein XP_002348220 [Homo
sapiens]
Length = 189
Score = 31.6 bits (70), Expect = 1.1
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 93 QKGSACPLWPVRG--KDSGRRRRRRQHFAPG--TSSGLRSAPGLTR 134
QKG+ACPL RG + G+R+ R APG +GL ++P TR
Sbjct: 61 QKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTR 106
>gi|239746909 PREDICTED: hypothetical protein XP_002343871 [Homo
sapiens]
Length = 189
Score = 31.6 bits (70), Expect = 1.1
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 93 QKGSACPLWPVRG--KDSGRRRRRRQHFAPG--TSSGLRSAPGLTR 134
QKG+ACPL RG + G+R+ R APG +GL ++P TR
Sbjct: 61 QKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTR 106
>gi|223029422 SKI-like isoform 3 [Homo sapiens]
Length = 664
Score = 30.8 bits (68), Expect = 1.8
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 241 ESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHL-----RVCSLRSNLAQRFKASKVQP 295
++L EL+ L EHA + Y E Q L+K L + C+ SNL K +
Sbjct: 556 QNLQKELESL--QNEHAQRMEEFYVE-QKDLEKKLEQIMKQKCTCDSNL------EKDKE 606
Query: 296 ATQEGDLAQPDTHQDKGNCDEQEAQDE 322
A G LA+ D D QE QDE
Sbjct: 607 AEYAGQLAELRQRLDHAEADRQELQDE 633
>gi|223029420 SKI-like isoform 2 [Homo sapiens]
Length = 638
Score = 30.8 bits (68), Expect = 1.8
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 241 ESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHL-----RVCSLRSNLAQRFKASKVQP 295
++L EL+ L EHA + Y E Q L+K L + C+ SNL K +
Sbjct: 530 QNLQKELESL--QNEHAQRMEEFYVE-QKDLEKKLEQIMKQKCTCDSNL------EKDKE 580
Query: 296 ATQEGDLAQPDTHQDKGNCDEQEAQDE 322
A G LA+ D D QE QDE
Sbjct: 581 AEYAGQLAELRQRLDHAEADRQELQDE 607
>gi|223029418 SKI-like isoform 1 [Homo sapiens]
Length = 684
Score = 30.8 bits (68), Expect = 1.8
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 241 ESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHL-----RVCSLRSNLAQRFKASKVQP 295
++L EL+ L EHA + Y E Q L+K L + C+ SNL K +
Sbjct: 576 QNLQKELESL--QNEHAQRMEEFYVE-QKDLEKKLEQIMKQKCTCDSNL------EKDKE 626
Query: 296 ATQEGDLAQPDTHQDKGNCDEQEAQDE 322
A G LA+ D D QE QDE
Sbjct: 627 AEYAGQLAELRQRLDHAEADRQELQDE 653
>gi|169166639 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 30.8 bits (68), Expect = 1.8
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 63 GDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAPGT 122
G SS +SP + RPG G + ++G WP G+ R RR H A
Sbjct: 89 GASSFLSP-----RFRPGWGEALLHHSGFPERG-----WPA-GETEARDPDRRLHCATRV 137
Query: 123 SSGLRSAPGLTR-AGPA 138
G R AP TR GPA
Sbjct: 138 EIGARGAPSATREPGPA 154
>gi|113416043 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 30.8 bits (68), Expect = 1.8
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 63 GDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAPGT 122
G SS +SP + RPG G + ++G WP G+ R RR H A
Sbjct: 89 GASSFLSP-----RFRPGWGEALLHHSGFPERG-----WPA-GETEARDPDRRLHCATRV 137
Query: 123 SSGLRSAPGLTR-AGPA 138
G R AP TR GPA
Sbjct: 138 EIGARGAPSATREPGPA 154
>gi|113415531 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 30.8 bits (68), Expect = 1.8
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 63 GDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAPGT 122
G SS +SP + RPG G + ++G WP G+ R RR H A
Sbjct: 89 GASSFLSP-----RFRPGWGEALLHHSGFPERG-----WPA-GETEARDPDRRLHCATRV 137
Query: 123 SSGLRSAPGLTR-AGPA 138
G R AP TR GPA
Sbjct: 138 EIGARGAPSATREPGPA 154
>gi|224922812 tropomyosin 2 (beta) isoform 3 [Homo sapiens]
Length = 231
Score = 30.8 bits (68), Expect = 1.8
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 238 VDGESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRSNLAQRFKASKVQPAT 297
+D E+ +Q K+ A C+ EE+Q LQK L+ + + ++ K +
Sbjct: 13 LDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLK--GTEDEVEKYSESEKAADES 70
Query: 298 QEG-DLAQPDTHQDKGNCDEQEAQDEESHSIAGD 330
+ G + + +D+ + QE Q +E+ IA D
Sbjct: 71 ERGMKVIENRAMKDEEKMELQEMQLKEAKHIAED 104
>gi|5730021 regulatory solute carrier protein, family 1, member 1
[Homo sapiens]
Length = 617
Score = 30.8 bits (68), Expect = 1.8
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 12/138 (8%)
Query: 200 IDYKKILKLTADAKFESGDVKATVAVLSFML--SGTAKHSVDGESLASELQQLGLPKEHA 257
I+ K + L A A+F+ K L + + +A H+ +S A +Q A
Sbjct: 48 IEPKAVKALKASAEFQLNSEKKEHLSLQDLSDHASSADHAPTDQSPAMPMQNSSEEITVA 107
Query: 258 ASLCRCYEEKQSPLQKHLR--------VCSLRSNLAQRFKASKV-QPATQE-GDLAQPDT 307
+L + E L+ HL V S R + Q F K P Q ++ P
Sbjct: 108 GNLEKSAERSTQGLKFHLHTRQEASLSVTSTRMHEPQMFLGEKDWHPENQNLSQVSDPQQ 167
Query: 308 HQDKGNCDEQEAQDEESH 325
H++ GN + AQ + SH
Sbjct: 168 HEEPGNEQYEVAQQKASH 185
>gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]
Length = 1282
Score = 30.4 bits (67), Expect = 2.4
Identities = 36/170 (21%), Positives = 69/170 (40%), Gaps = 10/170 (5%)
Query: 177 AKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFE--SGDVKATVAVLSFMLSGTA 234
AKM+S ++ L K L + ID + ++ + + + +G ++ SG +
Sbjct: 385 AKMASSRVTLFSDS--KPLGSEDIDNQGLMMPKEEKQMDLNTGRMRRKAIFGDEDESGDS 442
Query: 235 KHSVDGESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRSNLAQRFKASKVQ 294
D E + + G E A EE +++ V ++ + + S++
Sbjct: 443 DDEEDDEMSEDDGLENGSSDEEAEE-----EENAEMTDQYMAVKGIKRRKLELEEDSEMD 497
Query: 295 -PATQEGDLAQPDTHQDKGNCDEQEAQDEESHSIAGDKGIQQAGGFGAGS 343
PA + D + ++G +E + EE AG+KGI + G GS
Sbjct: 498 LPAFADSDDDLERSSAEEGEAEEADESSEEEDCTAGEKGISGSKAAGEGS 547
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 30.4 bits (67), Expect = 2.4
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 75 PKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAPGTSSGLR-SAPGLT 133
P++RP G P + + G PL P G + RR R QH + T+S PG
Sbjct: 274 PEERPSSGQQDVAPDRGPEPGPPAPLPPPGG--ARARRARLQHSSALTASVEEGGVPGED 331
Query: 134 RAG-PALPEAVSPSQVIVDSVDP 155
+ PA PE P V+P
Sbjct: 332 PSSRPATPELAEPESAPTLRVEP 354
>gi|38327034 ubiquitination factor E4B isoform 2 [Homo sapiens]
Length = 1173
Score = 30.0 bits (66), Expect = 3.2
Identities = 17/80 (21%), Positives = 35/80 (43%)
Query: 176 LAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAK 235
L +++ + L+L C++ K + Y K L +K +K+T+A+ F L
Sbjct: 1023 LDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKV 1082
Query: 236 HSVDGESLASELQQLGLPKE 255
+ ++ +E+ P E
Sbjct: 1083 EEIVAKNARAEIDYSDAPDE 1102
>gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]
Length = 1302
Score = 30.0 bits (66), Expect = 3.2
Identities = 17/80 (21%), Positives = 35/80 (43%)
Query: 176 LAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAK 235
L +++ + L+L C++ K + Y K L +K +K+T+A+ F L
Sbjct: 1152 LDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKV 1211
Query: 236 HSVDGESLASELQQLGLPKE 255
+ ++ +E+ P E
Sbjct: 1212 EEIVAKNARAEIDYSDAPDE 1231
>gi|56788364 tubulin, gamma complex associated protein 6 [Homo
sapiens]
Length = 1819
Score = 30.0 bits (66), Expect = 3.2
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 13/97 (13%)
Query: 56 CWAHLHPGDSSLI--SPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRR 113
C H H D+S+ P + RP + +P HM G+ P ++
Sbjct: 1239 CNTHGHVSDASISLGEPVSDVVSTRPRWNTHVPIPPPHMVLGALSP-------EAEPNTP 1291
Query: 114 RRQHFAPGTSS----GLRSAPGLTRAGPALPEAVSPS 146
R Q PG +S L + + GP LP V PS
Sbjct: 1292 RPQQSPPGHTSQSALSLGAQSTVLDCGPRLPVEVGPS 1328
>gi|239757091 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 29.6 bits (65), Expect = 4.1
Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 54 PACWAHLHPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRR 113
PA W+ P D A P + G + K M+ S P P + +
Sbjct: 12 PASWSAAGPPDG------AGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKST 65
Query: 114 RRQHFAPGTSSGLRSAPGLTRAGPA 138
R H GLR P + GPA
Sbjct: 66 SRVHCRAAEGGGLRPVPAVPLPGPA 90
>gi|239751597 PREDICTED: hypothetical protein XP_002347925 [Homo
sapiens]
Length = 194
Score = 29.6 bits (65), Expect = 4.1
Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 54 PACWAHLHPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRR 113
PA W+ P D A P + G + K M+ S P P + +
Sbjct: 12 PASWSAAGPPDG------AGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKST 65
Query: 114 RRQHFAPGTSSGLRSAPGLTRAGPA 138
R H GLR P + GPA
Sbjct: 66 SRVHCRAAEGGGLRPVPAVPLPGPA 90
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,944,884
Number of Sequences: 37866
Number of extensions: 725486
Number of successful extensions: 2363
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2321
Number of HSP's gapped (non-prelim): 83
length of query: 344
length of database: 18,247,518
effective HSP length: 103
effective length of query: 241
effective length of database: 14,347,320
effective search space: 3457704120
effective search space used: 3457704120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.