Guide to the Human Genome
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Name: LOC646670 Sequence: fasta or formatted (422aa) NCBI GI: 169208214
Description:

PREDICTED: similar to COMM domain containing 4

Referenced in:

Additional Interaction Domain Families

Other entries for this name:
alt prot [437aa] PREDICTED: similar to COMM domain containing 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         36           2
 C cysteine            3.8         16           3
 D aspartate           3.1         13           1
 E glutamate           3.8         16           2
 F phenylalanine       2.1          9           1
 G glycine             7.1         30           2
 H histidine           4.0         17           2
 I isoleucine          2.8         12           1
 K lysine              5.7         24           2
 L leucine            12.6         53           2
 M methionine          1.9          8           2
 N asparagine          1.2          5           1
 P proline             7.8         33           3
 Q glutamine           3.8         16           2
 R arginine            7.6         32           2
 S serine              9.2         39           2
 T threonine           3.3         14           2
 V valine              8.1         34           2
 W tryptophan          1.9          8           1
 Y tyrosine            1.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to COMM domain containing 4 [Hom... 
LOC646670             0.979   PREDICTED: similar to COMM domain containing 4 [Hom...
LOC440292             0.288   PREDICTED: similar to hCG1731366 
LOC440292             0.246   PREDICTED: similar to hCG1731366 
LOC440292             0.246   PREDICTED: similar to COMM domain containing 4 [Hom...
COMMD4                0.245   COMM domain containing 4 
UBE4B                 0.008   ubiquitination factor E4B isoform 2 
UBE4B                 0.008   ubiquitination factor E4B isoform 1 
MUC5AC                0.008   mucin 5AC 
LOC100132635          0.008   PREDICTED: similar to mucin 5, partial 
ATXN2                 0.008   ataxin 2 
LOC100293282          0.007   PREDICTED: hypothetical protein 
LOC100289818          0.007   PREDICTED: hypothetical protein XP_002347476 
FLJ45455              0.006   hypothetical protein LOC388336 
COMMD10               0.006   COMM domain containing 10 
KCNIP2                0.005   Kv channel interacting protein 2 isoform 1 
PIGQ                  0.005   phosphatidylinositol glycan anchor biosynthesis, cla...
PLXNA3                0.005   plexin A3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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