Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239745158
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745158 PREDICTED: hypothetical protein XP_002343376 [Homo
sapiens]
(156 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745158 PREDICTED: hypothetical protein XP_002343376 [Homo ... 330 4e-91
gi|239745123 PREDICTED: hypothetical protein XP_002343373 [Homo ... 306 4e-84
gi|122937271 WAS protein homolog associated with actin, golgi me... 251 1e-67
gi|195947369 junction-mediating and regulatory protein [Homo sap... 42 2e-04
gi|239756566 PREDICTED: hypothetical protein [Homo sapiens] 31 0.37
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 30 0.83
gi|7705555 iroquois homeobox 4 [Homo sapiens] 29 1.4
gi|239744051 PREDICTED: hypothetical protein XP_002343025 [Homo ... 29 1.8
gi|239755454 PREDICTED: hypothetical protein [Homo sapiens] 28 4.1
gi|239757788 PREDICTED: hypothetical protein [Homo sapiens] 27 5.4
gi|157502181 two pore segment channel 2 [Homo sapiens] 27 5.4
gi|169213725 PREDICTED: hypothetical protein [Homo sapiens] 27 7.0
gi|169214202 PREDICTED: hypothetical protein [Homo sapiens] 27 7.0
gi|169213543 PREDICTED: hypothetical protein [Homo sapiens] 27 7.0
gi|155723000 mixed lineage kinase 4 [Homo sapiens] 27 7.0
gi|95147559 ankyrin repeat domain 43 [Homo sapiens] 27 7.0
gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens] 27 7.0
gi|224591419 zinc finger and BTB domain containing 8B [Homo sapi... 27 9.2
gi|239753634 PREDICTED: hypothetical protein [Homo sapiens] 27 9.2
gi|239748191 PREDICTED: hypothetical protein [Homo sapiens] 27 9.2
gi|239742087 PREDICTED: hypothetical protein [Homo sapiens] 27 9.2
gi|13376717 OPA3 protein isoform b [Homo sapiens] 27 9.2
gi|21450844 megakaryocyte-associated tyrosine kinase isoform c [... 27 9.2
gi|21450842 megakaryocyte-associated tyrosine kinase isoform b [... 27 9.2
gi|21450846 megakaryocyte-associated tyrosine kinase isoform a [... 27 9.2
gi|22325372 hypothetical protein LOC138716 [Homo sapiens] 27 9.2
gi|22325370 hypothetical protein LOC138716 [Homo sapiens] 27 9.2
>gi|239745158 PREDICTED: hypothetical protein XP_002343376 [Homo
sapiens]
Length = 156
Score = 330 bits (845), Expect = 4e-91
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MEDEQLDSLEGWAPVRQGLFADAERHRLRFLVAWNGAEAAVFPPNWAGRFSAAGFRGARW 60
MEDEQLDSLEGWAPVRQGLFADAERHRLRFLVAWNGAEAAVFPPNWAGRFSAAGFRGARW
Sbjct: 1 MEDEQLDSLEGWAPVRQGLFADAERHRLRFLVAWNGAEAAVFPPNWAGRFSAAGFRGARW 60
Query: 61 QLAALWPPLERCSPQLDVGGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYLGAA 120
QLAALWPPLERCSPQLDVGGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYLGAA
Sbjct: 61 QLAALWPPLERCSPQLDVGGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYLGAA 120
Query: 121 AHGCGGATVRHAVFAAKGRAADCESPREFRERALRA 156
AHGCGGATVRHAVFAAKGRAADCESPREFRERALRA
Sbjct: 121 AHGCGGATVRHAVFAAKGRAADCESPREFRERALRA 156
>gi|239745123 PREDICTED: hypothetical protein XP_002343373 [Homo
sapiens]
Length = 205
Score = 306 bits (785), Expect = 4e-84
Identities = 156/205 (76%), Positives = 156/205 (76%), Gaps = 49/205 (23%)
Query: 1 MEDEQLDSLEGWAPVRQGLFADAERHRLRFLVAWNGAE---------------------- 38
MEDEQLDSLEGWAPVRQGLFADAERHRLRFLVAWNGAE
Sbjct: 1 MEDEQLDSLEGWAPVRQGLFADAERHRLRFLVAWNGAEGKLAVTCHDLTAQQPQRREGAR 60
Query: 39 ---------------------------AAVFPPNWAGRFSAAGFRGARWQLAALWPPLER 71
AAVFPPNWAGRFSAAGFRGARWQLAALWPPLER
Sbjct: 61 LGLEPKPKAAVSPPSCRVPAQLPCPRPAAVFPPNWAGRFSAAGFRGARWQLAALWPPLER 120
Query: 72 CSPQLDVGGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYLGAAAHGCGGATVRH 131
CSPQLDVGGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYLGAAAHGCGGATVRH
Sbjct: 121 CSPQLDVGGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYLGAAAHGCGGATVRH 180
Query: 132 AVFAAKGRAADCESPREFRERALRA 156
AVFAAKGRAADCESPREFRERALRA
Sbjct: 181 AVFAAKGRAADCESPREFRERALRA 205
>gi|122937271 WAS protein homolog associated with actin, golgi
membranes and microtubules [Homo sapiens]
Length = 809
Score = 251 bits (642), Expect = 1e-67
Identities = 131/192 (68%), Positives = 137/192 (71%), Gaps = 36/192 (18%)
Query: 1 MEDEQLDSLEGWAPVRQGLFADAERHRLRFLVAWNGAE---------------------- 38
MEDEQ DSLEGW PVR+GLFA+ ERHRLRFLVAWNGAE
Sbjct: 1 MEDEQPDSLEGWVPVREGLFAEPERHRLRFLVAWNGAEGKFAVTCHDRTAQQRRLREGAR 60
Query: 39 ----------AAVFPPNWAGRFSAAGFRGARWQLAALWPPLERC----SPQLDVGGGGAW 84
AAV P +WAG SAAG RGA QLAALWPPLERC P+LDVGGGGAW
Sbjct: 61 LGPEPEPKPEAAVSPSSWAGLLSAAGLRGAHRQLAALWPPLERCFPRLPPELDVGGGGAW 120
Query: 85 SLGLGLWALLWQARAGPGEVALQELCGQLERYLGAAAHGCGGATVRHAVFAAKGRAADCE 144
LGLGLWALLW RAGPGE ALQELCGQLERYLGAAA GCGGATVR A+F A+G AADCE
Sbjct: 121 GLGLGLWALLWPTRAGPGEAALQELCGQLERYLGAAADGCGGATVRDALFPAEGGAADCE 180
Query: 145 SPREFRERALRA 156
SPREFRERALRA
Sbjct: 181 SPREFRERALRA 192
>gi|195947369 junction-mediating and regulatory protein [Homo
sapiens]
Length = 988
Score = 42.4 bits (98), Expect = 2e-04
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 19/110 (17%)
Query: 45 NWAGRFSAAGFRGARWQLAALWPPLERCSPQLDVGGGGAWSLGLGLWALLWQARAGPGEV 104
+WAG FS R QL ++ LE C P G W++ G G E+
Sbjct: 228 SWAGLFSFQDLRAVHQQLCSVNSQLEPCLPVFPEEPSGMWTVLFG----------GAPEM 277
Query: 105 ALQE---LCGQLERYLGAAAHGCGGATVRHAVFAAKGRAADCESPREFRE 151
QE LC QL+ YLG CG + +F + + P E+ E
Sbjct: 278 TEQEIDTLCYQLQVYLGHGLDTCGWKILSQVLF------TETDDPEEYYE 321
Score = 32.7 bits (73), Expect = 0.13
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 3 DEQLDSLEGWAPVRQGLFADAERHRLRFLVAWNGAE 38
+E L+S W VR +F + E+H+ F+VAWN E
Sbjct: 6 EETLES--DWVAVRPHVFDEREKHKFVFIVAWNEIE 39
>gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]
Length = 214
Score = 31.2 bits (69), Expect = 0.37
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 117 LGAAAHGCGGATVRHAVFAAKGRAADCESPR 147
LG A G GGA +RH+ +G A C PR
Sbjct: 178 LGEGAAGGGGAHLRHSCSTGRGSATRCPGPR 208
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 30.0 bits (66), Expect = 0.83
Identities = 27/65 (41%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 42 FPPNWAGRFSAAGFRGARWQLAALWPPLERCSPQLDVGGGGAWSLGLGLWALLWQARAGP 101
F P WAGR S GA + A WP ER PQ G + LG G A Q R GP
Sbjct: 9 FSPPWAGRPSGCNLVGAGRRCRA-WP--ERAWPQ----AGDSDCLGQGRRA---QRRPGP 58
Query: 102 GEVAL 106
G A+
Sbjct: 59 GVSAV 63
>gi|7705555 iroquois homeobox 4 [Homo sapiens]
Length = 519
Score = 29.3 bits (64), Expect = 1.4
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 2 EDEQLDSLEGWAPVRQGLFADAERHRLRFLVAWNGAEAAVFPPNWAGRFSAAGFRGARWQ 61
+D + SL W G+F D AW A+ A+ P GR AG
Sbjct: 428 QDSPVTSLRNWV---DGVFHDPILRHSTLNQAWATAKGALLDPGPLGRSLGAGANVLTAP 484
Query: 62 LAALWPP 68
LA +PP
Sbjct: 485 LARAFPP 491
>gi|239744051 PREDICTED: hypothetical protein XP_002343025 [Homo
sapiens]
Length = 306
Score = 28.9 bits (63), Expect = 1.8
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 46 WAGRFSAAGFRGARWQLAALW----PPLERCSPQL 76
WAG S A R RW ALW PP + S QL
Sbjct: 123 WAGPGSLAAHRPQRWGSGALWWRRLPPRSQSSGQL 157
>gi|239755454 PREDICTED: hypothetical protein [Homo sapiens]
Length = 305
Score = 27.7 bits (60), Expect = 4.1
Identities = 36/119 (30%), Positives = 45/119 (37%), Gaps = 24/119 (20%)
Query: 57 GARWQLAALWPPLER----CSPQLDVGGGGAWSLGLGLWALLWQ--ARAGPGEVALQELC 110
G W+ +W PLER SP G W G G+W L + + A PGE + C
Sbjct: 156 GVPWREGGVWRPLERRASVASPGQKGECGVPWREG-GVWRPLERRGSVASPGE---KGEC 211
Query: 111 G----------QLERYLGAAAHG----CGGATVRHAVFAAKGRAADCESPREFRERALR 155
G LER A+ G CG AV+ R SP E E +R
Sbjct: 212 GVPWREGRVWRPLERRASVASPGQKGECGVPWREGAVWRPLDRRGSVASPGEKGECGVR 270
>gi|239757788 PREDICTED: hypothetical protein [Homo sapiens]
Length = 191
Score = 27.3 bits (59), Expect = 5.4
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 47 AGRFSAAGFRGARWQLAALWPPLERCSPQLDVGGGGAWSLGLGLWALLWQARAGPGEVAL 106
AGR + A R L +L PP D GG G L GLW+ G++
Sbjct: 69 AGRRAGAWLMHQRVSLVSLLPPW-------DSGGSGGCGLSPGLWS--------GGQLGG 113
Query: 107 QELCGQLER 115
Q GQ ER
Sbjct: 114 QLQSGQQER 122
>gi|157502181 two pore segment channel 2 [Homo sapiens]
Length = 752
Score = 27.3 bits (59), Expect = 5.4
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 79 GGGGAWSLGLGLWALLWQARAGPGEVALQELC 110
GGGG W GL + + + GPG A +LC
Sbjct: 17 GGGGDWPAGLTTYRSI---QVGPGAAARWDLC 45
>gi|169213725 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 26.9 bits (58), Expect = 7.0
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 79 GGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYL-----GAAAHGCGGA 127
G GG+WS G + W+ GP A E G L + L G G GGA
Sbjct: 66 GAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
>gi|169214202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 26.9 bits (58), Expect = 7.0
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 79 GGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYL-----GAAAHGCGGA 127
G GG+WS G + W+ GP A E G L + L G G GGA
Sbjct: 66 GAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
>gi|169213543 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 26.9 bits (58), Expect = 7.0
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 79 GGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYL-----GAAAHGCGGA 127
G GG+WS G + W+ GP A E G L + L G G GGA
Sbjct: 66 GAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
>gi|155723000 mixed lineage kinase 4 [Homo sapiens]
Length = 1036
Score = 26.9 bits (58), Expect = 7.0
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 81 GGAWSLGLGLWALLWQARA-GPGEVALQELCGQLERYLGAAA 121
GG+ S G GLWA L+ A G E++L+ GQL L A
Sbjct: 33 GGSASAGAGLWAALYDYEARGEDELSLRR--GQLVEVLSQDA 72
>gi|95147559 ankyrin repeat domain 43 [Homo sapiens]
Length = 549
Score = 26.9 bits (58), Expect = 7.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 89 GLWALLWQARAGPGEVALQ--ELCGQLERYLGAAAHGCGGATVRH 131
G AL W A++G GE+ALQ E+ + + A GG T H
Sbjct: 346 GFTALHWAAKSGDGEMALQLVEVARRSGAPVDVNARSHGGYTPLH 390
>gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens]
Length = 496
Score = 26.9 bits (58), Expect = 7.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 94 LWQARAGPGEVALQELCGQLERYLGAAAHGCGGATVRHAVFAA 136
L+Q G + L LE + G A +GCG +A AA
Sbjct: 330 LYQCDCGTFFASAAALASHLEAHSGPATYGCGHCGALYAALAA 372
>gi|224591419 zinc finger and BTB domain containing 8B [Homo
sapiens]
Length = 495
Score = 26.6 bits (57), Expect = 9.2
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 108 ELCGQLERYLGAAAHGCGGATVRHAVFAAKGRAADCESPREFRE 151
++C ++E+ AA A A AA D ESP RE
Sbjct: 123 DICRKMEKEAAVAAAVAAAAAAAAAAAAAAAHQVDSESPSSGRE 166
>gi|239753634 PREDICTED: hypothetical protein [Homo sapiens]
Length = 347
Score = 26.6 bits (57), Expect = 9.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 22 DAERHRLRFLVAWNGAEAAVFPPNWAGRFSAAGFRGARWQLAALWPPLERCSPQL 76
+ ER R V ++ ++ VFP S A RG + +++W PL R SP +
Sbjct: 217 EKERKLRRGSVGFSTSDNHVFPDRRPEPCSFAIRRGLQRASSSIWAPLPRKSPAI 271
>gi|239748191 PREDICTED: hypothetical protein [Homo sapiens]
Length = 347
Score = 26.6 bits (57), Expect = 9.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 22 DAERHRLRFLVAWNGAEAAVFPPNWAGRFSAAGFRGARWQLAALWPPLERCSPQL 76
+ ER R V ++ ++ VFP S A RG + +++W PL R SP +
Sbjct: 217 EKERKLRRGSVGFSTSDNHVFPDRRPEPCSFAIRRGLQRASSSIWAPLPRKSPAI 271
>gi|239742087 PREDICTED: hypothetical protein [Homo sapiens]
Length = 347
Score = 26.6 bits (57), Expect = 9.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 22 DAERHRLRFLVAWNGAEAAVFPPNWAGRFSAAGFRGARWQLAALWPPLERCSPQL 76
+ ER R V ++ ++ VFP S A RG + +++W PL R SP +
Sbjct: 217 EKERKLRRGSVGFSTSDNHVFPDRRPEPCSFAIRRGLQRASSSIWAPLPRKSPAI 271
>gi|13376717 OPA3 protein isoform b [Homo sapiens]
Length = 179
Score = 26.6 bits (57), Expect = 9.2
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 86 LGLGLWALLWQARAGPGEVALQELCGQLERYLGAAAHGCG-GATVRHAVFAAK 137
L L L AL Q +A P + AL+EL +L+ A C G + HAV A+K
Sbjct: 129 LALALEALQAQVQAAPPQGALEELRTELQE---VRAQLCNPGRSASHAVPASK 178
>gi|21450844 megakaryocyte-associated tyrosine kinase isoform c
[Homo sapiens]
Length = 466
Score = 26.6 bits (57), Expect = 9.2
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 84 WSLGLGLWALLWQARAGPGEVALQELCGQLER-YLGAAAHGCGGATVRHAVFAAKGRAAD 142
WS G+ LW + RA +++L+E+ +E+ Y GC G H + ++ A
Sbjct: 367 WSFGVLLWEVFSYGRAPYPKMSLKEVSEAVEKGYRMEPPEGCPGPV--HVLMSSCWEAEP 424
Query: 143 CESP--REFRERALR 155
P R+ E+ R
Sbjct: 425 ARRPPFRKLAEKLAR 439
>gi|21450842 megakaryocyte-associated tyrosine kinase isoform b
[Homo sapiens]
Length = 508
Score = 26.6 bits (57), Expect = 9.2
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 84 WSLGLGLWALLWQARAGPGEVALQELCGQLER-YLGAAAHGCGGATVRHAVFAAKGRAAD 142
WS G+ LW + RA +++L+E+ +E+ Y GC G H + ++ A
Sbjct: 409 WSFGVLLWEVFSYGRAPYPKMSLKEVSEAVEKGYRMEPPEGCPGPV--HVLMSSCWEAEP 466
Query: 143 CESP--REFRERALR 155
P R+ E+ R
Sbjct: 467 ARRPPFRKLAEKLAR 481
>gi|21450846 megakaryocyte-associated tyrosine kinase isoform a
[Homo sapiens]
Length = 507
Score = 26.6 bits (57), Expect = 9.2
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 84 WSLGLGLWALLWQARAGPGEVALQELCGQLER-YLGAAAHGCGGATVRHAVFAAKGRAAD 142
WS G+ LW + RA +++L+E+ +E+ Y GC G H + ++ A
Sbjct: 408 WSFGVLLWEVFSYGRAPYPKMSLKEVSEAVEKGYRMEPPEGCPGPV--HVLMSSCWEAEP 465
Query: 143 CESP--REFRERALR 155
P R+ E+ R
Sbjct: 466 ARRPPFRKLAEKLAR 480
>gi|22325372 hypothetical protein LOC138716 [Homo sapiens]
Length = 163
Score = 26.6 bits (57), Expect = 9.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 112 QLERYLGAAAHGCGGATVRHAVFAAKGRAA 141
++ LG A G + RH VF+ GRAA
Sbjct: 35 KIRNLLGLALGRLEGGSARHVVFSGSGRAA 64
>gi|22325370 hypothetical protein LOC138716 [Homo sapiens]
Length = 163
Score = 26.6 bits (57), Expect = 9.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 112 QLERYLGAAAHGCGGATVRHAVFAAKGRAA 141
++ LG A G + RH VF+ GRAA
Sbjct: 35 KIRNLLGLALGRLEGGSARHVVFSGSGRAA 64
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,994,694
Number of Sequences: 37866
Number of extensions: 325898
Number of successful extensions: 771
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 32
length of query: 156
length of database: 18,247,518
effective HSP length: 94
effective length of query: 62
effective length of database: 14,688,114
effective search space: 910663068
effective search space used: 910663068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.