Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TPCN2 Sequence: fasta or formatted (752aa) NCBI GI: 157502181
Description:

two pore segment channel 2

Referenced in:

Calcium and TRP Cation Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         54           3
 C cysteine            1.5         11           1
 D aspartate           3.6         27           2
 E glutamate           4.5         34           2
 F phenylalanine       6.1         46           2
 G glycine             6.0         45           4
 H histidine           1.6         12           1
 I isoleucine          4.7         35           2
 K lysine              2.4         18           2
 L leucine            16.1        121           3
 M methionine          3.1         23           2
 N asparagine          3.6         27           2
 P proline             4.7         35           2
 Q glutamine           3.7         28           1
 R arginine            5.5         41           3
 S serine              7.0         53           2
 T threonine           3.7         28           2
 V valine              8.6         65           3
 W tryptophan          2.5         19           2
 Y tyrosine            4.0         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   two pore segment channel 2 
TPCN1                 0.109   two pore segment channel 1 isoform 1 
TPCN1                 0.109   two pore segment channel 1 isoform 2 
CACNA1C               0.051   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.051   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.051   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.051   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.051   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.051   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.051   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.051   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.049   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.049   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.049   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.049   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.049   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.049   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.049   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.049   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.049   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.047   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.047   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.047   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1H               0.045   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1H               0.045   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1E               0.045   calcium channel, voltage-dependent, R type, alpha 1E...
CACNA1G               0.045   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.045   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.045   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.045   voltage-dependent calcium channel alpha 1G subunit i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press