Guide to the Human Genome
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Name: NEDD9 Sequence: fasta or formatted (834aa) NCBI GI: 215422375
Description:

neural precursor cell expressed, developmentally down-regulated 9 isoform 3

Referenced in:

LIM Domain Proteins
Mammary Tissues
Neurons
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [834aa] neural precursor cell expressed, developmentally down-regulated 9...
alt prot [174aa] neural precursor cell expressed, developmentally down-regulated 9...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         53           2
 C cysteine            1.7         14           1
 D aspartate           5.5         46           2
 E glutamate           5.9         49           2
 F phenylalanine       2.5         21           1
 G glycine             6.1         51           2
 H histidine           3.4         28           2
 I isoleucine          4.2         35           1
 K lysine              5.3         44           2
 L leucine             8.6         72           2
 M methionine          2.4         20           1
 N asparagine          4.1         34           1
 P proline             7.9         66           3
 Q glutamine           7.4         62           2
 R arginine            4.7         39           2
 S serine              8.2         68           3
 T threonine           5.4         45           3
 V valine              6.2         52           1
 W tryptophan          0.8          7           2
 Y tyrosine            3.4         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neural precursor cell expressed, developmentally do... 
NEDD9                 0.994   neural precursor cell expressed, developmentally down...
BCAR1                 0.291   breast cancer anti-estrogen resistance 1 
NEDD9                 0.172   neural precursor cell expressed, developmentally dow...
CASS4                 0.143   HEF-like protein 
LOC100133063          0.066   PREDICTED: similar to breast cancer anti-estrogen r...
LOC646079             0.064   PREDICTED: similar to breast cancer anti-estrogen r...
LOC646079             0.064   PREDICTED: similar to breast cancer anti-estrogen r...
LOC646079             0.064   PREDICTED: similar to breast cancer anti-estrogen r...
EFS                   0.055   embryonal Fyn-associated substrate isoform 2 
EFS                   0.055   embryonal Fyn-associated substrate isoform 1 
ITSN1                 0.015   intersectin 1 isoform ITSN-s 
ITSN1                 0.015   intersectin 1 isoform ITSN-l 
C1orf113              0.014   SH3 domain-containing protein C1orf113 isoform 1 [H...
C1orf113              0.014   SH3 domain-containing protein C1orf113 isoform 2 [H...
SH3GL2                0.013   SH3-domain GRB2-like 2 
HCLS1                 0.013   hematopoietic cell-specific Lyn substrate 1 
PPP1R13L              0.013   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.013   protein phosphatase 1, regulatory subunit 13 like [H...
MAP3K11               0.013   mitogen-activated protein kinase kinase kinase 11 [Ho...
SH3KBP1               0.012   SH3-domain kinase binding protein 1 isoform b 
SH3KBP1               0.012   SH3-domain kinase binding protein 1 isoform a 
MYO1F                 0.012   myosin IF 
PEX13                 0.012   peroxisomal biogenesis factor 13 
PSTPIP1               0.012   proline-serine-threonine phosphatase interacting pro...
ITSN2                 0.011   intersectin 2 isoform 3 
ITSN2                 0.011   intersectin 2 isoform 1 
ITSN2                 0.011   intersectin 2 isoform 2 
PPP1R13B              0.011   apoptosis-stimulating protein of p53, 1 
SPTAN1                0.011   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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