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Search of human proteins with 239745025
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745025 PREDICTED: hypothetical protein XP_002343301 [Homo
sapiens]
(119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745025 PREDICTED: hypothetical protein XP_002343301 [Homo ... 257 2e-69
gi|239756179 PREDICTED: hypothetical protein [Homo sapiens] 251 9e-68
gi|239750719 PREDICTED: hypothetical protein XP_002347491 [Homo ... 251 9e-68
gi|239745038 PREDICTED: hypothetical protein XP_002343338 [Homo ... 41 2e-04
gi|38176300 nestin [Homo sapiens] 30 0.42
gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 30 0.42
gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 30 0.42
gi|30409982 lysosomal associated transmembrane protein 4 beta [H... 30 0.55
gi|146219832 myosin light chain kinase 3 [Homo sapiens] 29 0.94
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens] 28 1.6
gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens] 28 1.6
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 28 2.1
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 28 2.1
gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo sap... 27 2.7
gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo sapi... 27 2.7
gi|89057843 PREDICTED: hypothetical protein LOC284801 [Homo sapi... 27 2.7
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 27 2.7
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 27 3.6
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 27 3.6
gi|148839466 kalirin, RhoGEF kinase isoform 1 [Homo sapiens] 27 4.7
gi|68362740 kalirin, RhoGEF kinase isoform 3 [Homo sapiens] 27 4.7
gi|239755577 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 27 4.7
gi|56549117 dynamin 1 isoform 2 [Homo sapiens] 27 4.7
gi|59853099 dynamin 1 isoform 1 [Homo sapiens] 27 4.7
gi|163644316 hypothetical protein LOC23255 [Homo sapiens] 26 6.1
gi|223633988 hypothetical protein LOC85379 [Homo sapiens] 26 7.9
gi|239758067 PREDICTED: similar to facioscapulohumeral muscular ... 26 7.9
gi|239747180 PREDICTED: hypothetical protein XP_002343933 [Homo ... 26 7.9
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 26 7.9
>gi|239745025 PREDICTED: hypothetical protein XP_002343301 [Homo
sapiens]
Length = 119
Score = 257 bits (656), Expect = 2e-69
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT 60
MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT
Sbjct: 1 MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT 60
Query: 61 RMPMFSLLRETGTDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSLWVF 119
RMPMFSLLRETGTDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSLWVF
Sbjct: 61 RMPMFSLLRETGTDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSLWVF 119
>gi|239756179 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 251 bits (641), Expect = 9e-68
Identities = 119/123 (96%), Positives = 119/123 (96%), Gaps = 4/123 (3%)
Query: 1 MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT 60
MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT
Sbjct: 1 MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT 60
Query: 61 RMPMFSLLRETG----TDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSL 116
RMPMFSLLRETG TDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSL
Sbjct: 61 RMPMFSLLRETGPAWRTDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSL 120
Query: 117 WVF 119
WVF
Sbjct: 121 WVF 123
>gi|239750719 PREDICTED: hypothetical protein XP_002347491 [Homo
sapiens]
Length = 123
Score = 251 bits (641), Expect = 9e-68
Identities = 119/123 (96%), Positives = 119/123 (96%), Gaps = 4/123 (3%)
Query: 1 MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT 60
MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT
Sbjct: 1 MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT 60
Query: 61 RMPMFSLLRETG----TDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSL 116
RMPMFSLLRETG TDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSL
Sbjct: 61 RMPMFSLLRETGPAWRTDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSL 120
Query: 117 WVF 119
WVF
Sbjct: 121 WVF 123
>gi|239745038 PREDICTED: hypothetical protein XP_002343338 [Homo
sapiens]
Length = 244
Score = 41.2 bits (95), Expect = 2e-04
Identities = 37/107 (34%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Query: 12 RVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVTRMPMFSLLRET 71
R+ PV P A R P + R G PL CGTGL L TR P S L ET
Sbjct: 116 RISVAAAPVLPAA-PRPPTQRRCVPVAQRGLPL----CGTGLG---LETRRPARSCLGET 167
Query: 72 GTDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSLWV 118
+R R P P R G R F+P SLWV
Sbjct: 168 AAPFRFPRCECKPPTPQRLHPCGLQTHRGVFIPVGYRRTAASSSLWV 214
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 5 EGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFP---LDHT 47
E S L G+ +DP P R G R +E A RG E FP L HT
Sbjct: 1153 EFSELPGKSRDPWEPPREG---REESEAEAPRGAEEAFPAETLGHT 1195
>gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 529
Score = 30.0 bits (66), Expect = 0.42
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 15/104 (14%)
Query: 5 EGSSLEGRVQDPCPPVRPGALGRNPAE-ERAGRGLGEGFPLDHTECGTGLDTITLVTRMP 63
+G+ E P P P LGR P E+A RG G P +H G G++ P
Sbjct: 178 DGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDG---PEEHPLQG-GVE--------P 225
Query: 64 MFSLLRETGTDYRSSRLRHAPRHPVRRAGQGSWC--SRMRFLPA 105
L + G + + LR P AG GS C + ++ LPA
Sbjct: 226 WEPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQILPA 269
>gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 503
Score = 30.0 bits (66), Expect = 0.42
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 15/104 (14%)
Query: 5 EGSSLEGRVQDPCPPVRPGALGRNPAE-ERAGRGLGEGFPLDHTECGTGLDTITLVTRMP 63
+G+ E P P P LGR P E+A RG G P +H G G++ P
Sbjct: 152 DGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDG---PEEHPLQG-GVE--------P 199
Query: 64 MFSLLRETGTDYRSSRLRHAPRHPVRRAGQGSWC--SRMRFLPA 105
L + G + + LR P AG GS C + ++ LPA
Sbjct: 200 WEPLGQAQGFENTAETLRALSTRPSAGAGSGSSCDPAPLQILPA 243
>gi|30409982 lysosomal associated transmembrane protein 4 beta
[Homo sapiens]
Length = 317
Score = 29.6 bits (65), Expect = 0.55
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 12/50 (24%)
Query: 12 RVQDPCPPVRP-----------GALGRNPAEERAGRGLGEGFPLDHTECG 50
RV P PP RP GA G +PAE R+ RG+ E P H G
Sbjct: 6 RVTWPSPP-RPLPVPAAAAVAFGAKGTDPAEARSSRGIEEAGPRAHGRAG 54
>gi|146219832 myosin light chain kinase 3 [Homo sapiens]
Length = 819
Score = 28.9 bits (63), Expect = 0.94
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 9 LEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFP 43
LEG + PP+R LG +PA+ G G+G P
Sbjct: 197 LEGTAER-LPPIRASGLGADPAQAVVSPGQGDGVP 230
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 2 GKLEGSSLEGRVQD----PCPPVRPGALGRNPAEERAGRGLGEGF 42
G+ EG+S E R++ P P PGAL R AGR G GF
Sbjct: 224 GRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRP-GPGF 267
>gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens]
Length = 814
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 17 CPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTG 52
C PV G N E R+G +G G P H C G
Sbjct: 303 CCPVCDGCF-LNGREHRSGEPVGSGDPCSHCRCANG 337
>gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens]
Length = 1503
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 17 CPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTG 52
C PV G N E R+G +G G P H C G
Sbjct: 245 CCPVCDGCF-LNGREHRSGEPVGSGDPCSHCRCANG 279
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 9 LEGRVQDPCPPVRPGAL---GRNPAEERAGRGLGEGFPLD-HTECGTGLDTITLVTRMPM 64
LEG +DPC P L +N E + L G ++ T+ GT L L + +
Sbjct: 95 LEGEAKDPCDPNYTTPLHLAAKNGHREVIRQLLRAGIEINRQTKTGTALHEAALYGKTEV 154
Query: 65 FSLLRETGTD 74
LL E G D
Sbjct: 155 VRLLLEGGVD 164
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 9 LEGRVQDPCPPVRPGAL---GRNPAEERAGRGLGEGFPLD-HTECGTGLDTITLVTRMPM 64
LEG +DPC P L +N E + L G ++ T+ GT L L + +
Sbjct: 177 LEGEAKDPCDPNYTTPLHLAAKNGHREVIRQLLRAGIEINRQTKTGTALHEAALYGKTEV 236
Query: 65 FSLLRETGTD 74
LL E G D
Sbjct: 237 VRLLLEGGVD 246
>gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 24 ALGRNP---AEERAGRGLGEGFPLDHTECGTGLDTITLVTRMP 63
ALG+ P A G G G +H CG G++ + +V P
Sbjct: 71 ALGKRPTVGARRSPGAGPGRRMDENHERCGPGVEFVAVVASGP 113
>gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 24 ALGRNP---AEERAGRGLGEGFPLDHTECGTGLDTITLVTRMP 63
ALG+ P A G G G +H CG G++ + +V P
Sbjct: 71 ALGKRPTVGARRSPGAGPGRRMDENHERCGPGVEFVAVVASGP 113
>gi|89057843 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 24 ALGRNP---AEERAGRGLGEGFPLDHTECGTGLDTITLVTRMP 63
ALG+ P A G G G +H CG G++ + +V P
Sbjct: 71 ALGKRPTVGARRSPGAGPGRRMDENHERCGPGVEFVAVVASGP 113
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 27.3 bits (59), Expect = 2.7
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 20/93 (21%)
Query: 16 PCPPVRP---------GALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVTRMPMFS 66
P PPV P GA+GR P ERAG G P G T +R P
Sbjct: 35 PPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGP-----TRTSRPP--- 86
Query: 67 LLRETGTDYRSSRLRHAPRHPVRRAGQGSWCSR 99
+G R+ ++ PV G+ S +R
Sbjct: 87 ---ASGRGERAPPAKNTSPGPVSSPGRASGTTR 116
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 26.9 bits (58), Expect = 3.6
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 21/98 (21%)
Query: 16 PCPPVRP---------GALGRNPAEERAGRGLG-----EGFPLDHTECGTGLDTITLVTR 61
P PPV P GA+GR P ERAG G+G E P G + +R
Sbjct: 35 PPPPVTPAALRVLGAAGAVGRKPLAERAG-GIGGATIPESAPRAGPTRSAGTSSRNPASR 93
Query: 62 MPMFSLLRETGTDYRSSRLRHAPRHPVRRAGQGSWCSR 99
P +G R+ ++ PV G+ S +R
Sbjct: 94 PP------ASGRGERAPPAKNTSPGPVSSPGRASGTTR 125
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 26.9 bits (58), Expect = 3.6
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 21/98 (21%)
Query: 16 PCPPVRP---------GALGRNPAEERAGRGLG-----EGFPLDHTECGTGLDTITLVTR 61
P PPV P GA+GR P ERAG G+G E P G + +R
Sbjct: 35 PPPPVTPAALRVLGAAGAVGRKPLAERAG-GIGGATIPESAPRAGPTRSAGTSSRNPASR 93
Query: 62 MPMFSLLRETGTDYRSSRLRHAPRHPVRRAGQGSWCSR 99
P +G R+ ++ PV G+ S +R
Sbjct: 94 PP------ASGRGERAPPAKNTSPGPVSSPGRASGTTR 125
>gi|148839466 kalirin, RhoGEF kinase isoform 1 [Homo sapiens]
Length = 2986
Score = 26.6 bits (57), Expect = 4.7
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 12/43 (27%)
Query: 4 LEGSSLEGRVQDP--------CPPVRPGALGRNPAEERAGRGL 38
LEGSS G ++DP PP P +NP EE+ + L
Sbjct: 1889 LEGSSYRGSLKDPAGCLNEGMAPPTPP----KNPEEEQKAKAL 1927
>gi|68362740 kalirin, RhoGEF kinase isoform 3 [Homo sapiens]
Length = 1289
Score = 26.6 bits (57), Expect = 4.7
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 12/43 (27%)
Query: 4 LEGSSLEGRVQDP--------CPPVRPGALGRNPAEERAGRGL 38
LEGSS G ++DP PP P +NP EE+ + L
Sbjct: 192 LEGSSYRGSLKDPAGCLNEGMAPPTPP----KNPEEEQKAKAL 230
>gi|239755577 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 312
Score = 26.6 bits (57), Expect = 4.7
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 5 EGSSLEGRVQDPCPPVRPGALGRNPAE-ERAGRGLGEGFPLDHTEC 49
+G+ E P P P LGR P E+A RG G P +H C
Sbjct: 178 DGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDG---PEEHLSC 220
>gi|56549117 dynamin 1 isoform 2 [Homo sapiens]
Length = 851
Score = 26.6 bits (57), Expect = 4.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 18 PPVRPGALGRNPAEERAGRGLGEGFPL 44
PP RPG+ G P AG LG P+
Sbjct: 789 PPARPGSRGPAPGPPPAGSALGGAPPV 815
>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
Length = 864
Score = 26.6 bits (57), Expect = 4.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 18 PPVRPGALGRNPAEERAGRGLGEGFPL 44
PP RPG+ G P AG LG P+
Sbjct: 789 PPARPGSRGPAPGPPPAGSALGGAPPV 815
>gi|163644316 hypothetical protein LOC23255 [Homo sapiens]
Length = 1586
Score = 26.2 bits (56), Expect = 6.1
Identities = 19/83 (22%), Positives = 31/83 (37%)
Query: 12 RVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVTRMPMFSLLRET 71
R +P P + PG + R+ +G G + E G G ++ P ++L
Sbjct: 1471 RSAEPRPELGPGQETGTNSRGRSPSPIGVGSEMCREEGGEGTPVKQDLSAPPGYTLTENV 1530
Query: 72 GTDYRSSRLRHAPRHPVRRAGQG 94
L HA + R+A G
Sbjct: 1531 ARILNKKLLEHALKEERRQAAHG 1553
>gi|223633988 hypothetical protein LOC85379 [Homo sapiens]
Length = 1806
Score = 25.8 bits (55), Expect = 7.9
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 8 SLEGRVQDPCPPVRPGALGRNP----AEERAGRGLGEGFP-LDHTECGTG 52
S E V+ P P +RP + G +P +EE A + L P L E G+G
Sbjct: 72 SKEQDVKSPVPSLRPSSTGPSPSGGLSEEPAAKDLDNRMPGLVGQEVGSG 121
>gi|239758067 PREDICTED: similar to facioscapulohumeral muscular
dystrophy [Homo sapiens]
Length = 468
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 12 RVQDPCPPVRPGALGRNPAEERAGRGLGE 40
R+ P PP RPG G +P + G+ +G+
Sbjct: 384 RLLVPTPPRRPGDPGPSPNADSPGKRVGQ 412
>gi|239747180 PREDICTED: hypothetical protein XP_002343933 [Homo
sapiens]
Length = 1595
Score = 25.8 bits (55), Expect = 7.9
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 8 SLEGRVQDPCPPVRPGALGRNP----AEERAGRGLGEGFP-LDHTECGTG 52
S E V+ P P +RP + G +P +EE A + L P L E G+G
Sbjct: 72 SKEQDVKSPVPSLRPSSTGPSPSGGLSEEPAAKDLDNRMPGLVGQEVGSG 121
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 25.8 bits (55), Expect = 7.9
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 18 PPVRPGA--LGRNPAEERAGRGLGEGFPLDHTE 48
PP+ PG L P G G G+ FPLD +
Sbjct: 287 PPLGPGLQPLAPPPPSYPCGPGFGDKFPLDEAD 319
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.140 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,042,688
Number of Sequences: 37866
Number of extensions: 288536
Number of successful extensions: 842
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 39
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.