Guide to the Human Genome
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Search of human proteins with 239745020

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo
sapiens]
         (229 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756183 PREDICTED: hypothetical protein [Homo sapiens]           471   e-133
gi|239750714 PREDICTED: hypothetical protein [Homo sapiens]           471   e-133
gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo ...   471   e-133
gi|27436927 synoviolin 1 isoform b [Homo sapiens]                      41   0.001
gi|27436925 synoviolin 1 isoform a [Homo sapiens]                      41   0.001
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]            39   0.004
gi|169202775 PREDICTED: hypothetical protein [Homo sapiens]            39   0.005
gi|89034573 PREDICTED: hypothetical protein [Homo sapiens]             39   0.005
gi|89033790 PREDICTED: hypothetical protein [Homo sapiens]             39   0.005
gi|239753349 PREDICTED: hypothetical protein LOC285141 [Homo sap...    38   0.008
gi|239747917 PREDICTED: hypothetical protein LOC285141 [Homo sap...    38   0.008
gi|239741811 PREDICTED: hypothetical protein LOC285141 [Homo sap...    38   0.008
gi|239508745 PREDICTED: hypothetical protein [Homo sapiens]            37   0.014
gi|4503907 galanin receptor 3 [Homo sapiens]                           37   0.014
gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo ...    37   0.018
gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo ...    37   0.018
gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain...    36   0.024
gi|169210192 PREDICTED: hypothetical protein [Homo sapiens]            36   0.031
gi|113425957 PREDICTED: hypothetical protein [Homo sapiens]            36   0.031
gi|239750699 PREDICTED: hypothetical protein XP_002347487 [Homo ...    35   0.053
gi|210147475 zinc finger protein 92 homolog [Homo sapiens]             35   0.053
gi|239756144 PREDICTED: hypothetical protein [Homo sapiens]            35   0.070
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]       35   0.070
gi|239745007 PREDICTED: hypothetical protein XP_002343295 [Homo ...    34   0.091
gi|24308065 netrin 5 [Homo sapiens]                                    34   0.091
gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens]     34   0.091
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]            34   0.12 
gi|117938318 vacuolar protein sorting 37D [Homo sapiens]               34   0.12 
gi|61966721 Tctex1 domain containing 4 [Homo sapiens]                  34   0.12 
gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens]           33   0.16 

>gi|239756183 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 229

 Score =  471 bits (1213), Expect = e-133
 Identities = 229/229 (100%), Positives = 229/229 (100%)

Query: 1   MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG 60
           MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG
Sbjct: 1   MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG 60

Query: 61  RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH 120
           RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH
Sbjct: 61  RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH 120

Query: 121 RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS 180
           RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS
Sbjct: 121 RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS 180

Query: 181 RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES 229
           RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES
Sbjct: 181 RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES 229


>gi|239750714 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 229

 Score =  471 bits (1213), Expect = e-133
 Identities = 229/229 (100%), Positives = 229/229 (100%)

Query: 1   MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG 60
           MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG
Sbjct: 1   MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG 60

Query: 61  RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH 120
           RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH
Sbjct: 61  RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH 120

Query: 121 RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS 180
           RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS
Sbjct: 121 RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS 180

Query: 181 RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES 229
           RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES
Sbjct: 181 RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES 229


>gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo
           sapiens]
          Length = 229

 Score =  471 bits (1213), Expect = e-133
 Identities = 229/229 (100%), Positives = 229/229 (100%)

Query: 1   MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG 60
           MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG
Sbjct: 1   MPSQSLVNGQLEKGQSTLVKCQERGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAG 60

Query: 61  RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH 120
           RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH
Sbjct: 61  RLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQH 120

Query: 121 RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS 180
           RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS
Sbjct: 121 RVDLRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRS 180

Query: 181 RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES 229
           RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES
Sbjct: 181 RRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPPHCES 229


>gi|27436927 synoviolin 1 isoform b [Homo sapiens]
          Length = 617

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 54/196 (27%), Positives = 75/196 (38%), Gaps = 14/196 (7%)

Query: 40  SPGRRAGLCGASAALGTRPAGRLRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPA---- 95
           S G        SAA  +RP+G      +       S  A   PG+ + PE  AGPA    
Sbjct: 399 SSGEAVAPPSTSAAALSRPSGAATTTAAGTSATAASATASG-PGSGSAPE--AGPAPGFP 455

Query: 96  FREAWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQG--ALLLQRRLQRGRRLAAV 153
           F   W+  P PP P  F    +          +EL   L+G     L+ RLQ  R +  +
Sbjct: 456 FPPPWMGMPLPP-PFAFPPMPVPPAGFAGLTPEEL-RALEGHERQHLEARLQSLRNIHTL 513

Query: 154 LQQQRHQLAQVLLQHRHVAPPRPAGRSRRSHPRSLAALASRRRACAGGGPGDVAARPSGT 213
           L     Q+ Q L     + PPRPA     +   +   +A+   A +   P   A  P+  
Sbjct: 514 LDAAMLQINQYLTVLASLGPPRPATSVNSTEETATTVVAA---ASSTSIPSSEATTPTPG 570

Query: 214 CSLGAGRGPQPPHCES 229
            S  A    +PP  ES
Sbjct: 571 ASPPAPEMERPPAPES 586


>gi|27436925 synoviolin 1 isoform a [Homo sapiens]
          Length = 616

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 58/206 (28%), Positives = 77/206 (37%), Gaps = 22/206 (10%)

Query: 30  PGRAVGVARASPGRRAGLCGASAALGTRPAGRLRPPGSAHPGVICSCRAPPIPGTSATPE 89
           P  + G A A P   A L   S A  T  AG      SA             PG+ + PE
Sbjct: 396 PPPSSGEAVAPPSTSAALSRPSGAATTTAAGTSATAASATASG---------PGSGSAPE 446

Query: 90  DLAGPA----FREAWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQG--ALLLQRR 143
             AGPA    F   W+  P PP P  F    +          +EL   L+G     L+ R
Sbjct: 447 --AGPAPGFPFPPPWMGMPLPP-PFAFPPMPVPPAGFAGLTPEEL-RALEGHERQHLEAR 502

Query: 144 LQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRSRRSHPRSLAALASRRRACAGGGP 203
           LQ  R +  +L     Q+ Q L     + PPRPA     +   +   +A+   A +   P
Sbjct: 503 LQSLRNIHTLLDAAMLQINQYLTVLASLGPPRPATSVNSTEETATTVVAA---ASSTSIP 559

Query: 204 GDVAARPSGTCSLGAGRGPQPPHCES 229
              A  P+   S  A    +PP  ES
Sbjct: 560 SSEATTPTPGASPPAPEMERPPAPES 585


>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 257

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 37/94 (39%), Positives = 43/94 (45%), Gaps = 12/94 (12%)

Query: 24  RGALGAPGR--AVGVARASPG--RRAGLCGASAALGTR--PAGRLRPP-GSAHPGVICSC 76
           RG   A  R  A G AR SP    RAG   A+++ GTR  PA RL PP G    G     
Sbjct: 110 RGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLG--AGS 167

Query: 77  RAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPR 110
           RA   PG++A P     P+    W   P P  PR
Sbjct: 168 RALRRPGSAALPR---SPSSSRRWAAMPGPGAPR 198


>gi|169202775 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 96

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 9/80 (11%)

Query: 24  RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRP--PGSAHPGVICSCRAPPI 81
           R A  AP RA    R  PG R G CG +A++ T PA    P  P SA  G      APP+
Sbjct: 23  RVAAPAPPRAPEDFR--PGPRGGPCGLAASVVTIPAPHGLPPVPASAQDGA-----APPV 75

Query: 82  PGTSATPEDLAGPAFREAWL 101
               + P  L   A + AWL
Sbjct: 76  SSLLSPPRRLPPRALQAAWL 95


>gi|89034573 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 96

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 9/80 (11%)

Query: 24  RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRP--PGSAHPGVICSCRAPPI 81
           R A  AP RA    R  PG R G CG +A++ T PA    P  P SA  G      APP+
Sbjct: 23  RVAAPAPPRAPEDFR--PGPRGGPCGLAASVVTIPAPHGLPPVPASAQDGA-----APPV 75

Query: 82  PGTSATPEDLAGPAFREAWL 101
               + P  L   A + AWL
Sbjct: 76  SSLLSPPRRLPPRALQAAWL 95


>gi|89033790 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 96

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 9/80 (11%)

Query: 24  RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRP--PGSAHPGVICSCRAPPI 81
           R A  AP RA    R  PG R G CG +A++ T PA    P  P SA  G      APP+
Sbjct: 23  RVAAPAPPRAPEDFR--PGPRGGPCGLAASVVTIPAPHGLPPVPASAQDGA-----APPV 75

Query: 82  PGTSATPEDLAGPAFREAWL 101
               + P  L   A + AWL
Sbjct: 76  SSLLSPPRRLPPRALQAAWL 95


>gi|239753349 PREDICTED: hypothetical protein LOC285141 [Homo
           sapiens]
          Length = 327

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 24  RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRPP-GSAHPGVICSCRAPPIP 82
           R  LGAP  A   +RA  G R    G SA  G +         G   P  +CS   PP  
Sbjct: 38  RSRLGAPSSARAASRA--GSRCVPFGWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQ 95

Query: 83  GTSATPEDLAGPAFRE-AWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQ 141
            T      + GP +R   WLW P P   R    G         R+R     L  G LL Q
Sbjct: 96  TTPRPGARVCGPLYRTWFWLWAPGPVAARGRREG---------RMRATGVRLACGTLLPQ 146

Query: 142 RRLQRGRRLA 151
              +  +RL+
Sbjct: 147 WSEEVRKRLS 156


>gi|239747917 PREDICTED: hypothetical protein LOC285141 [Homo
           sapiens]
          Length = 327

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 24  RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRPP-GSAHPGVICSCRAPPIP 82
           R  LGAP  A   +RA  G R    G SA  G +         G   P  +CS   PP  
Sbjct: 38  RSRLGAPSSARAASRA--GSRCVPFGWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQ 95

Query: 83  GTSATPEDLAGPAFRE-AWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQ 141
            T      + GP +R   WLW P P   R    G         R+R     L  G LL Q
Sbjct: 96  TTPRPGARVCGPLYRTWFWLWAPGPVAARGRREG---------RMRATGVRLACGTLLPQ 146

Query: 142 RRLQRGRRLA 151
              +  +RL+
Sbjct: 147 WSEEVRKRLS 156


>gi|239741811 PREDICTED: hypothetical protein LOC285141 [Homo
           sapiens]
          Length = 327

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 24  RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRPP-GSAHPGVICSCRAPPIP 82
           R  LGAP  A   +RA  G R    G SA  G +         G   P  +CS   PP  
Sbjct: 38  RSRLGAPSSARAASRA--GSRCVPFGWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQ 95

Query: 83  GTSATPEDLAGPAFRE-AWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQ 141
            T      + GP +R   WLW P P   R    G         R+R     L  G LL Q
Sbjct: 96  TTPRPGARVCGPLYRTWFWLWAPGPVAARGRREG---------RMRATGVRLACGTLLPQ 146

Query: 142 RRLQRGRRLA 151
              +  +RL+
Sbjct: 147 WSEEVRKRLS 156


>gi|239508745 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 249

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 35/86 (40%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 142 RRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGR--SRRSHPRSLAALASRRR--A 197
           R    GR LA  LQQ R   A    +   V  PRPAG   + +    S AA A RRR  A
Sbjct: 98  RHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERA 157

Query: 198 CAGGGPGDVAA--RPSGTCSLGAGRG 221
           CAG   GD A    P  T   G  RG
Sbjct: 158 CAGRSAGDAAGPEAPQPTGGRGCSRG 183


>gi|4503907 galanin receptor 3 [Homo sapiens]
          Length = 368

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 25/51 (49%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 176 PAGRSRRSHPRSLAALASRRRACAG--GGPGDVAARPSGTCSLGAGRGPQP 224
           P GR RR   R   AL   R A +G  G PGD  ARPSG    G G+GP+P
Sbjct: 307 PCGRRRRHRARR--ALRRVRPASSGPPGCPGD--ARPSGRLLAGGGQGPEP 353


>gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo
           sapiens]
          Length = 470

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 71/212 (33%), Positives = 81/212 (38%), Gaps = 36/212 (16%)

Query: 34  VGVARASPGR-RAGLCGASAALGTRPAGRLRPPGSAHPGVICSCRAPPIPGTSATPEDLA 92
           VG  RA PGR R GL GA AALG   AG  +P            R    PG+ A P  + 
Sbjct: 71  VGRRRACPGRGRGGLPGA-AALG---AGAQQPRRR---------RLAQPPGSRA-PLQVG 116

Query: 93  GPAFREAWLWRPCPPRPRTFERGALHQHRVDLR--VRKELAHLLQGALLLQRRLQRGRRL 150
           G   R A L    PPR R     A H         +R + A       L   RL RG   
Sbjct: 117 GAPRRRAHLTGG-PPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPP 175

Query: 151 AAVLQQQRH---QLAQVLLQHRHVAPPRPAGRSRRSHPRSLAALA-SRRRACAGGGPGD- 205
           A      R    +L  +LLQ     PP  +    +S    L A A SR   CAGGG GD 
Sbjct: 176 APAAGLWRAGCTRLRPLLLQ----PPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDP 231

Query: 206 ---VAARPSGTCS------LGAGRGPQPPHCE 228
              V  RP    S           GP P +CE
Sbjct: 232 GPIVGGRPENEDSPRFPDVPTRPAGPSPFYCE 263



 Score = 33.9 bits (76), Expect = 0.12
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 166 LQHRHVAPPRPAGRSRRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAG------ 219
           +Q  H   P    ++R    R  A +  RRRAC G G G +     G  +LGAG      
Sbjct: 45  IQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGL----PGAAALGAGAQQPRR 100

Query: 220 -RGPQPP 225
            R  QPP
Sbjct: 101 RRLAQPP 107


>gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo
           sapiens]
          Length = 470

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 71/212 (33%), Positives = 81/212 (38%), Gaps = 36/212 (16%)

Query: 34  VGVARASPGR-RAGLCGASAALGTRPAGRLRPPGSAHPGVICSCRAPPIPGTSATPEDLA 92
           VG  RA PGR R GL GA AALG   AG  +P            R    PG+ A P  + 
Sbjct: 71  VGRRRACPGRGRGGLPGA-AALG---AGAQQPRRR---------RLAQPPGSRA-PLQVG 116

Query: 93  GPAFREAWLWRPCPPRPRTFERGALHQHRVDLR--VRKELAHLLQGALLLQRRLQRGRRL 150
           G   R A L    PPR R     A H         +R + A       L   RL RG   
Sbjct: 117 GAPRRRAHLTGG-PPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPP 175

Query: 151 AAVLQQQRH---QLAQVLLQHRHVAPPRPAGRSRRSHPRSLAALA-SRRRACAGGGPGD- 205
           A      R    +L  +LLQ     PP  +    +S    L A A SR   CAGGG GD 
Sbjct: 176 APAAGLWRAGCTRLRPLLLQ----PPPMLSPGLAQSPGVELHARAHSRAHTCAGGGEGDP 231

Query: 206 ---VAARPSGTCS------LGAGRGPQPPHCE 228
              V  RP    S           GP P +CE
Sbjct: 232 GPIVGGRPENEDSPRFPDVPTRPAGPSPFYCE 263



 Score = 33.9 bits (76), Expect = 0.12
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 166 LQHRHVAPPRPAGRSRRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAG------ 219
           +Q  H   P    ++R    R  A +  RRRAC G G G +     G  +LGAG      
Sbjct: 45  IQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGL----PGAAALGAGAQQPRR 100

Query: 220 -RGPQPP 225
            R  QPP
Sbjct: 101 RRLAQPP 107


>gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain and
            proline-rich containing [Homo sapiens]
          Length = 1435

 Score = 36.2 bits (82), Expect = 0.024
 Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 51   SAALGTRPAGRLRPPGSAHPGVICS-CRAPPIPGTSATPED-LAGPAFREAWLWRPCPPR 108
            +A L +R  G+   PG   PG   S CR  P P +   PED   GP   +  L     PR
Sbjct: 1297 NAELRSRGWGQQDGPGPPSPGQSPSPCRTSPSPDSLGLPEDPCLGPRNEDGQL----RPR 1352

Query: 109  PRTFERGALHQHRVDLRVRKELAHLLQGALLLQRR 143
            P +  R A+  H   L+   E    LQ + +L+RR
Sbjct: 1353 PLSAGRRAVSVHEDQLQAPAERPLRLQRSPVLKRR 1387


>gi|169210192 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 194

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 39  ASPGRRAGLCGASAALGTRPAGRLRPPGSAHPGVICSCRAPPIPGTSATPED 90
           A P R + LCG+   LG R AG    PG A P +   C+A P P  + TP D
Sbjct: 104 ARPCRVSTLCGSR--LGRRRAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPD 153


>gi|113425957 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 194

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 39  ASPGRRAGLCGASAALGTRPAGRLRPPGSAHPGVICSCRAPPIPGTSATPED 90
           A P R + LCG+   LG R AG    PG A P +   C+A P P  + TP D
Sbjct: 104 ARPCRVSTLCGSR--LGRRRAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPD 153


>gi|239750699 PREDICTED: hypothetical protein XP_002347487 [Homo
           sapiens]
          Length = 155

 Score = 35.0 bits (79), Expect = 0.053
 Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 18/154 (11%)

Query: 42  GRRAGLCGASAALGTRPAGRLRPPGSA---------HPGVICSCRAPPIPGTSATPEDLA 92
           GRR   C A       P G  R PG A           G   +  A  + G     E   
Sbjct: 9   GRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTVQGPVDKVEVAL 68

Query: 93  GPAFREAWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQRRLQRGRRLAA 152
           G A ++  L        R  E   +HQH   +R+R     LL        R  R +RL  
Sbjct: 69  GLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELL--------RALRAQRLGL 120

Query: 153 VLQQQRHQLAQVL-LQHRHVAPPRPAGRSRRSHP 185
            ++ +R +   +L LQ RH     P  RS R  P
Sbjct: 121 GVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGP 154


>gi|210147475 zinc finger protein 92 homolog [Homo sapiens]
          Length = 416

 Score = 35.0 bits (79), Expect = 0.053
 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 42  GRRAGLCGASAALGTR------PAGRLRPPGSAHPGVICSCRAPPIPGTSATP 88
           GRRA L    A  G R       A RL  PGS  PG   +  +PP P T+A P
Sbjct: 358 GRRANLFKHQAVHGARRPAKAETARRLAGPGSTGPGSAVAATSPPRPSTAARP 410


>gi|239756144 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 156

 Score = 34.7 bits (78), Expect = 0.070
 Identities = 44/155 (28%), Positives = 58/155 (37%), Gaps = 19/155 (12%)

Query: 42  GRRAGLCGASAALGTRPAGRLRPPGSAHPGV-ICSCRAPPIPGTSATP---------EDL 91
           GRR   C A       P G  R PG A   V +   +A   P  +AT          E  
Sbjct: 9   GRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPVDKVEVA 68

Query: 92  AGPAFREAWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQRRLQRGRRLA 151
            G A ++  L        R  E   +HQH   +R+R     LL        R  R +RL 
Sbjct: 69  LGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELL--------RALRAQRLG 120

Query: 152 AVLQQQRHQLAQVL-LQHRHVAPPRPAGRSRRSHP 185
             ++ +R +   +L LQ RH     P  RS R  P
Sbjct: 121 LGVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGP 155


>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
          Length = 1006

 Score = 34.7 bits (78), Expect = 0.070
 Identities = 28/85 (32%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 30  PGRAVGVARASPGRRAGLCGASAALGTRPAGRLRPPGSAHPGVI---CSCR----APPIP 82
           P  A G+     GR  G  G       RP    +P   + P      CS R     PPIP
Sbjct: 228 PSPAPGLTGRGQGRARGAVGLDCGCRPRPCSFGQPDVGSAPSRSLRGCSLRFRNTPPPIP 287

Query: 83  GTSATPEDLAGPAFREAWLWRPCPP 107
           G S  P     P FRE      CPP
Sbjct: 288 G-SDQPSSHGRPRFRETGDSEDCPP 311


>gi|239745007 PREDICTED: hypothetical protein XP_002343295 [Homo
           sapiens]
          Length = 156

 Score = 34.3 bits (77), Expect = 0.091
 Identities = 42/155 (27%), Positives = 55/155 (35%), Gaps = 19/155 (12%)

Query: 42  GRRAGLCGASAALGTRPAGRLRPPGSAHPGV----------ICSCRAPPIPGTSATPEDL 91
           GRR   C A       P G  R PG A   V            +  A  + G     E  
Sbjct: 9   GRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAAATTVQGPVDKVEVA 68

Query: 92  AGPAFREAWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQRRLQRGRRLA 151
            G A ++  L        R  E   +HQH   +R+R     LL        R  R +RL 
Sbjct: 69  LGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELL--------RALRAQRLG 120

Query: 152 AVLQQQRHQLAQVL-LQHRHVAPPRPAGRSRRSHP 185
             ++ +R +   +L LQ RH     P  RS R  P
Sbjct: 121 LGVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGP 155


>gi|24308065 netrin 5 [Homo sapiens]
          Length = 489

 Score = 34.3 bits (77), Expect = 0.091
 Identities = 60/222 (27%), Positives = 72/222 (32%), Gaps = 64/222 (28%)

Query: 25  GALGAPGR-------------AVGVARASPGRRAGLCGASA-------ALGTRPAGRLRP 64
           GALG P R             A    R   G +AGL  A             R A R RP
Sbjct: 113 GALGGPERVTFHSTPGPKATVAASHLRVEFGGQAGLAAAGLRGRCQCHGHAARCAARARP 172

Query: 65  PGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPR-PRTFERGALHQHRVD 123
           P        C CR      T+    +   P+ R+ W WRP  PR P      + +QH   
Sbjct: 173 PR-------CHCRHH----TTGPGCESCRPSHRD-WPWRPATPRHPHPCLPCSCNQHARR 220

Query: 124 LRVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRSRRS 183
            R   EL  L             G R   V ++ RH  A    +H H   P         
Sbjct: 221 CRFNSELFRL------------SGGRSGGVCERCRHHTAG---RHCHYCQP--------G 257

Query: 184 HPRSLAALASRRRACAG------GGPGDVAARPSG--TCSLG 217
             R  +     RRAC        G  G    + SG  TC LG
Sbjct: 258 FWRDPSQPIFSRRACRACQCHPIGATGGTCNQTSGQCTCKLG 299


>gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens]
          Length = 393

 Score = 34.3 bits (77), Expect = 0.091
 Identities = 46/175 (26%), Positives = 58/175 (33%), Gaps = 32/175 (18%)

Query: 24  RGALGAPGRAVGVARAS------PGRRAG---------LCGASAALGTRPAGRLRPPGSA 68
           R AL  P  + G  +A       PGR +          L GA     +       P G  
Sbjct: 217 RSALRFPSASPGSLKAKQSMAGIPGRESNAPSVPTVSLLPGAPGGNASSRTEAQVPNGQG 276

Query: 69  HPG-VICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERGALHQHRVDLRVR 127
            PG  +CS +A P P  +A P    GP              PRT E          L V 
Sbjct: 277 SPGGCVCSSQASPAPRAAAPPRAARGPT-------------PRTEEAAWAAMALTFLLVL 323

Query: 128 KELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPAGRSRR 182
             LA L      L R  +RG  +              +L+ R + P R   RSRR
Sbjct: 324 LTLATL---CTRLHRNFRRGESIYWGPTADSQDTVAAVLKRRLLQPSRRVKRSRR 375


>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 370

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 166 LQHRHVAPPRPAGRSRRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAG------ 219
           +Q  H   P    ++R    R  A +  RRRAC G G G +     G  +LGAG      
Sbjct: 45  IQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGL----PGAAALGAGAQQPRR 100

Query: 220 -RGPQPP 225
            R  QPP
Sbjct: 101 RRLAQPP 107


>gi|117938318 vacuolar protein sorting 37D [Homo sapiens]
          Length = 251

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 28/123 (22%)

Query: 128 KELAHLLQGALLLQRRL---QRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRP-------- 176
           +++  LL G   L+  L   QRGR LA + + Q  +L ++L +    A P P        
Sbjct: 132 EQMEQLLLGEQSLEAFLPAFQRGRALAHLRRTQAEKLQELLRRRERSAQPAPTSAADPPK 191

Query: 177 -----------AGRSRRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGR--GPQ 223
                      A R   + PRSL  L SR      G PG     P G   L + R   P+
Sbjct: 192 SFPAAAVLPTGAARGPPAVPRSLPPLDSRPVPPLKGSPG----CPLGPAPLLSPRPSQPE 247

Query: 224 PPH 226
           PPH
Sbjct: 248 PPH 250


>gi|61966721 Tctex1 domain containing 4 [Homo sapiens]
          Length = 221

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 23/54 (42%), Positives = 24/54 (44%), Gaps = 8/54 (14%)

Query: 172 APPRPAGRSRRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPP 225
           A P PA  SRR     LAA  SRR +  G G G    RPS         GP PP
Sbjct: 41  AGPGPAPASRRGSMLGLAASFSRRNSLVGPGAGPGGQRPS--------LGPVPP 86


>gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens]
          Length = 195

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 31/88 (35%), Positives = 36/88 (40%), Gaps = 16/88 (18%)

Query: 151 AAVLQQQRHQLAQVLLQHRHVAPPRPAGRSRRSHPRSL--AALASRRRACAGGG----PG 204
           A +L  +RH+ A       H  P RPA   RR H +     A A RR  C G G    PG
Sbjct: 86  AELLVGERHEFAWRSPAAAH-HPTRPAAPCRRHHQQQQQDQAEARRRERCGGSGVRVAPG 144

Query: 205 DV---------AARPSGTCSLGAGRGPQ 223
                      AAR  GT   G G GP+
Sbjct: 145 GSRRGRHGRRGAARAGGTQVRGGGPGPE 172


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,523,762
Number of Sequences: 37866
Number of extensions: 746861
Number of successful extensions: 4322
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 274
Number of HSP's that attempted gapping in prelim test: 4022
Number of HSP's gapped (non-prelim): 599
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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