Guide to the Human Genome
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Name: LOC100287569 Sequence: fasta or formatted (143aa) NCBI GI: 239744742
Description:

PREDICTED: hypothetical protein XP_002343249

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3          9           2
 C cysteine            6.3          9           2
 D aspartate           1.4          2           1
 E glutamate           2.8          4           1
 F phenylalanine       4.9          7           1
 G glycine             5.6          8           2
 H histidine           2.1          3           1
 I isoleucine          2.8          4           1
 K lysine              5.6          8           2
 L leucine             7.7         11           1
 M methionine          2.1          3           1
 N asparagine          1.4          2           1
 P proline             7.0         10           1
 Q glutamine           7.0         10           1
 R arginine            9.1         13           2
 S serine             11.9         17           3
 T threonine           4.2          6           1
 V valine              4.9          7           1
 W tryptophan          3.5          5           1
 Y tyrosine            3.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343249 
LOC100293703          1.000   PREDICTED: similar to Uncharacterized protein FLJ42...
LOC100291250          1.000   PREDICTED: hypothetical protein XP_002347362 
LMLN                  0.032   leishmanolysin-like isoform 1 
LOC100292369          0.025   PREDICTED: hypothetical protein 
LOC100290869          0.025   PREDICTED: hypothetical protein XP_002347120 
LOC100289412          0.025   PREDICTED: hypothetical protein XP_002344281 
GNAS                  0.021   GNAS complex locus alex 
LOC100292589          0.018   PREDICTED: hypothetical protein 
LOC100290121          0.018   PREDICTED: hypothetical protein XP_002346879 
LOC100289406          0.018   PREDICTED: hypothetical protein XP_002342721 
ARID1B                0.018   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.018   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.018   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
ARHGAP17              0.018   nadrin isoform 1 
ARHGAP17              0.018   nadrin isoform 2 
SYN2                  0.014   synapsin II isoform IIa 
FGD1                  0.014   faciogenital dysplasia protein 
SYN2                  0.014   synapsin II isoform IIb 
GDF10                 0.014   growth differentiation factor 10 precursor 
C16orf35              0.014   conserved gene telomeric to alpha globin cluster is...
ARID1A                0.011   AT rich interactive domain 1A isoform a 
ARID1A                0.011   AT rich interactive domain 1A isoform b 
LOC100132483          0.011   PREDICTED: hypothetical protein 
LOC389151             0.011   hypothetical protein LOC389151 
CARKD                 0.011   carbohydrate kinase domain containing 
PRPF4B                0.011   serine/threonine-protein kinase PRP4K 
DNM2                  0.007   dynamin 2 isoform 4 
DNM2                  0.007   dynamin 2 isoform 2 
DNM2                  0.007   dynamin 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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