Guide to the Human Genome
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Name: LOC100290869 Sequence: fasta or formatted (268aa) NCBI GI: 239749690
Description:

PREDICTED: hypothetical protein XP_002347120

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         24           1
 C cysteine            1.9          5           1
 D aspartate           2.2          6           1
 E glutamate           9.7         26           2
 F phenylalanine       2.2          6           1
 G glycine             4.5         12           1
 H histidine           1.1          3           1
 I isoleucine          2.2          6           2
 K lysine              3.0          8           1
 L leucine            21.3         57           3
 M methionine          1.1          3           2
 N asparagine          2.2          6           1
 P proline            11.6         31           2
 Q glutamine           5.2         14           1
 R arginine            6.0         16           2
 S serine              3.7         10           2
 T threonine           4.5         12           2
 V valine              7.1         19           2
 W tryptophan          0.7          2           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347120 
LOC100292369          1.000   PREDICTED: hypothetical protein 
LOC100289412          1.000   PREDICTED: hypothetical protein XP_002344281 
NCOR2                 0.028   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.028   nuclear receptor co-repressor 2 isoform 1 
RINL                  0.028   Ras and Rab interactor-like 
STAT2                 0.018   signal transducer and activator of transcription 2 [H...
PRX                   0.016   periaxin isoform 2 
RALGDS                0.016   ral guanine nucleotide dissociation stimulator isofo...
RALGDS                0.016   ral guanine nucleotide dissociation stimulator isof...
LOC100293703          0.014   PREDICTED: similar to Uncharacterized protein FLJ42...
LOC100291250          0.014   PREDICTED: hypothetical protein XP_002347362 
LOC100287569          0.014   PREDICTED: hypothetical protein XP_002343249 
XIRP2                 0.014   xin actin-binding repeat containing 2 isoform 1 [Ho...
KRTCAP3               0.014   keratinocyte associated protein 3 
DMRTC2                0.014   DMRT-like family C2 
DGKK                  0.014   diacylglycerol kinase kappa 
LOC731282             0.012   PREDICTED: hypothetical protein 
RNASET2               0.010   ribonuclease T2 precursor 
LOC643355             0.010   PREDICTED: hypothetical protein 
HTR3B                 0.010   5-hydroxytryptamine (serotonin) receptor 3B precursor...
PPRC1                 0.010   peroxisome proliferator-activated receptor gamma, co...
FOXA2                 0.010   forkhead box A2 isoform 2 
LOC100293535          0.010   PREDICTED: hypothetical protein 
LOC100289492          0.010   PREDICTED: hypothetical protein 
LOC100289492          0.010   PREDICTED: hypothetical protein XP_002343721 
LOC100287450          0.010   PREDICTED: hypothetical protein XP_002343550 
LOC100287417          0.010   PREDICTED: hypothetical protein XP_002343549 
LOC100287374          0.010   PREDICTED: hypothetical protein XP_002343548 
HSF2BP                0.010   heat shock transcription factor 2 binding protein [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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