BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239744738 PREDICTED: similar to microtubule-associated proteins 1A/1B light chain 3 [Homo sapiens] (105 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239755918 PREDICTED: similar to microtubule-associated protei... 214 9e-57 gi|239750436 PREDICTED: similar to microtubule-associated protei... 214 9e-57 gi|239744738 PREDICTED: similar to microtubule-associated protei... 214 9e-57 gi|12383056 microtubule-associated proteins 1A/1B light chain 3 ... 154 2e-38 gi|148277548 microtubule-associated protein 1 light chain 3 beta... 150 2e-37 gi|169183885 PREDICTED: similar to microtubule-associated protei... 141 1e-34 gi|169179756 PREDICTED: similar to microtubule-associated protei... 141 1e-34 gi|169180155 PREDICTED: similar to microtubule-associated protei... 141 1e-34 gi|31563518 microtubule-associated protein 1 light chain 3 alpha... 134 2e-32 gi|14210522 microtubule-associated protein 1 light chain 3 alpha... 134 2e-32 gi|51972260 microtubule-associated protein 1 light chain 3 gamma... 91 3e-19 gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo sapi... 60 4e-10 gi|13899219 GABA(A) receptor-associated protein like 1 [Homo sap... 51 2e-07 gi|6005764 GABA(A) receptor-associated protein [Homo sapiens] 49 1e-06 gi|153791466 AMIGO protein [Homo sapiens] 33 0.063 gi|4507537 nuclear receptor subfamily 2, group E, member 1 [Homo... 29 0.69 gi|38261969 APG12 autophagy 12-like [Homo sapiens] 28 2.0 gi|207028821 RNA binding motif protein 44 [Homo sapiens] 27 2.6 gi|50582996 multiple C2 domains, transmembrane 1 isoform S [Homo... 27 2.6 gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom... 27 2.6 gi|157694524 plexin D1 [Homo sapiens] 27 4.5 gi|94536836 2-oxoglutarate and iron-dependent oxygenase domain c... 26 5.9 gi|126012562 low density lipoprotein-related protein 1 [Homo sap... 26 7.7 >gi|239755918 PREDICTED: similar to microtubule-associated protein 1 light chain 3 beta [Homo sapiens] Length = 105 Score = 214 bits (546), Expect = 9e-57 Identities = 105/105 (100%), Positives = 105/105 (100%) Query: 1 MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60 MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL Sbjct: 1 MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60 Query: 61 VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105 VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN Sbjct: 61 VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105 >gi|239750436 PREDICTED: similar to microtubule-associated protein 1 light chain 3 beta [Homo sapiens] Length = 105 Score = 214 bits (546), Expect = 9e-57 Identities = 105/105 (100%), Positives = 105/105 (100%) Query: 1 MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60 MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL Sbjct: 1 MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60 Query: 61 VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105 VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN Sbjct: 61 VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105 >gi|239744738 PREDICTED: similar to microtubule-associated proteins 1A/1B light chain 3 [Homo sapiens] Length = 105 Score = 214 bits (546), Expect = 9e-57 Identities = 105/105 (100%), Positives = 105/105 (100%) Query: 1 MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60 MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL Sbjct: 1 MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60 Query: 61 VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105 VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN Sbjct: 61 VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105 >gi|12383056 microtubule-associated proteins 1A/1B light chain 3 [Homo sapiens] Length = 125 Score = 154 bits (388), Expect = 2e-38 Identities = 86/125 (68%), Positives = 91/125 (72%), Gaps = 22/125 (17%) Query: 1 MLSEKTFKQCCTFK----------------------RYQGEKELPVLDKTKFLVPDHVNM 38 M SEKTFKQ TF+ RY+GEK+LPVLDKTKFLVPDHVNM Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60 Query: 39 SELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFG 98 SEL KII+R L+LNANQAFFLLVNG S VSVSTP SEVYE EKDEDGFLY VYASQE FG Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120 Query: 99 RKLSV 103 KLSV Sbjct: 121 MKLSV 125 >gi|148277548 microtubule-associated protein 1 light chain 3 beta 2 [Homo sapiens] Length = 125 Score = 150 bits (379), Expect = 2e-37 Identities = 85/125 (68%), Positives = 90/125 (72%), Gaps = 22/125 (17%) Query: 1 MLSEKTFKQCCTFK----------------------RYQGEKELPVLDKTKFLVPDHVNM 38 M SEKTFKQ TF+ RY+GEK+LPVLDKTKFLVPDHVNM Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60 Query: 39 SELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFG 98 SEL KII+R L+LNANQAFFLLVNG S VSVSTP SEVYE EKDEDGFLY V ASQE FG Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120 Query: 99 RKLSV 103 KLSV Sbjct: 121 MKLSV 125 >gi|169183885 PREDICTED: similar to microtubule-associated proteins 1A/1B light chain 3 [Homo sapiens] Length = 157 Score = 141 bits (355), Expect = 1e-34 Identities = 81/124 (65%), Positives = 88/124 (70%), Gaps = 23/124 (18%) Query: 3 SEKTFKQCCTFK---------------------RYQGEKELPVLDKTKFLVPD--HVNMS 39 +EKTFKQ TF+ RYQGEK+LPVLDKTKFLVPD VNMS Sbjct: 34 AEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMS 93 Query: 40 ELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGR 99 EL KII+R L+LNANQAF L+VNG S VSVSTP SEVYE EKDEDGFLY VYASQE +G Sbjct: 94 ELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYGM 153 Query: 100 KLSV 103 KLSV Sbjct: 154 KLSV 157 >gi|169179756 PREDICTED: similar to microtubule-associated proteins 1A/1B light chain 3 [Homo sapiens] Length = 377 Score = 141 bits (355), Expect = 1e-34 Identities = 81/124 (65%), Positives = 88/124 (70%), Gaps = 23/124 (18%) Query: 3 SEKTFKQCCTFK---------------------RYQGEKELPVLDKTKFLVPD--HVNMS 39 +EKTFKQ TF+ RYQGEK+LPVLDKTKFLVPD VNMS Sbjct: 254 AEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMS 313 Query: 40 ELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGR 99 EL KII+R L+LNANQAF L+VNG S VSVSTP SEVYE EKDEDGFLY VYASQE +G Sbjct: 314 ELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYGM 373 Query: 100 KLSV 103 KLSV Sbjct: 374 KLSV 377 >gi|169180155 PREDICTED: similar to microtubule-associated proteins 1A/1B light chain 3 [Homo sapiens] Length = 377 Score = 141 bits (355), Expect = 1e-34 Identities = 81/124 (65%), Positives = 88/124 (70%), Gaps = 23/124 (18%) Query: 3 SEKTFKQCCTFK---------------------RYQGEKELPVLDKTKFLVPD--HVNMS 39 +EKTFKQ TF+ RYQGEK+LPVLDKTKFLVPD VNMS Sbjct: 254 AEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMS 313 Query: 40 ELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGR 99 EL KII+R L+LNANQAF L+VNG S VSVSTP SEVYE EKDEDGFLY VYASQE +G Sbjct: 314 ELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYGM 373 Query: 100 KLSV 103 KLSV Sbjct: 374 KLSV 377 >gi|31563518 microtubule-associated protein 1 light chain 3 alpha isoform b [Homo sapiens] Length = 125 Score = 134 bits (336), Expect = 2e-32 Identities = 66/85 (77%), Positives = 74/85 (87%) Query: 14 KRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT 73 +RY+GEK+LPVLDKTKFLVPDHVNMSEL KII+R L+LN QAFFLLVN S VSVSTP Sbjct: 40 ERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPI 99 Query: 74 SEVYEGEKDEDGFLYTVYASQEMFG 98 +++YE EKDEDGFLY VYASQE FG Sbjct: 100 ADIYEQEKDEDGFLYMVYASQETFG 124 >gi|14210522 microtubule-associated protein 1 light chain 3 alpha isoform a [Homo sapiens] Length = 121 Score = 134 bits (336), Expect = 2e-32 Identities = 66/85 (77%), Positives = 74/85 (87%) Query: 14 KRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT 73 +RY+GEK+LPVLDKTKFLVPDHVNMSEL KII+R L+LN QAFFLLVN S VSVSTP Sbjct: 36 ERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPI 95 Query: 74 SEVYEGEKDEDGFLYTVYASQEMFG 98 +++YE EKDEDGFLY VYASQE FG Sbjct: 96 ADIYEQEKDEDGFLYMVYASQETFG 120 >gi|51972260 microtubule-associated protein 1 light chain 3 gamma [Homo sapiens] Length = 147 Score = 90.5 bits (223), Expect = 3e-19 Identities = 45/85 (52%), Positives = 57/85 (67%) Query: 14 KRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT 73 +RY E LP LDKTKFLVP + M++ II+ + L A +AF+LLVN S VS+S Sbjct: 42 ERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATM 101 Query: 74 SEVYEGEKDEDGFLYTVYASQEMFG 98 +E+Y KDEDGF+Y YASQE FG Sbjct: 102 AEIYRDYKDEDGFVYMTYASQETFG 126 >gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo sapiens] Length = 117 Score = 60.1 bits (144), Expect = 4e-10 Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 3/75 (4%) Query: 25 LDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT-SEVYEGEKDE 83 +DK K+LVP + +++ II++ ++L + +A FL V+ TV S+ T ++YE EKDE Sbjct: 44 IDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVD--KTVPQSSLTMGQLYEKEKDE 101 Query: 84 DGFLYTVYASQEMFG 98 DGFLY Y+ + FG Sbjct: 102 DGFLYVAYSGENTFG 116 >gi|13899219 GABA(A) receptor-associated protein like 1 [Homo sapiens] Length = 117 Score = 51.2 bits (121), Expect = 2e-07 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Query: 22 LPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEK 81 +P LDK K+LVP + + + +I++ + L A F VN + S ++YE Sbjct: 41 VPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNH 99 Query: 82 DEDGFLYTVYASQEMFGR 99 +ED FLY Y+ + ++G+ Sbjct: 100 EEDYFLYVAYSDESVYGK 117 >gi|6005764 GABA(A) receptor-associated protein [Homo sapiens] Length = 117 Score = 48.5 bits (114), Expect = 1e-06 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 9/78 (11%) Query: 25 LDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTS----EVYEGE 80 LDK K+LVP + + + +I++ + L A A F VN +V PTS ++Y+ Sbjct: 44 LDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVN-----NVIPPTSATMGQLYQEH 98 Query: 81 KDEDGFLYTVYASQEMFG 98 +ED FLY Y+ + ++G Sbjct: 99 HEEDFFLYIAYSDESVYG 116 >gi|153791466 AMIGO protein [Homo sapiens] Length = 493 Score = 32.7 bits (73), Expect = 0.063 Identities = 18/38 (47%), Positives = 23/38 (60%) Query: 66 TVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSV 103 TVSVS S +++ + EDG +YT YA E F LSV Sbjct: 317 TVSVSKDGSLLFQQVQVEDGGVYTCYAMGETFNETLSV 354 >gi|4507537 nuclear receptor subfamily 2, group E, member 1 [Homo sapiens] Length = 385 Score = 29.3 bits (64), Expect = 0.69 Identities = 12/41 (29%), Positives = 22/41 (53%) Query: 45 IKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDG 85 +K+CL +N N+ GP T ++ + + G K+E+G Sbjct: 75 LKKCLEVNMNKDAVQHERGPRTSTIRKQVALYFRGHKEENG 115 >gi|38261969 APG12 autophagy 12-like [Homo sapiens] Length = 187 Score = 27.7 bits (60), Expect = 2.0 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Query: 21 ELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGE 80 + P++ K+ V + L IK+ L+L A++ F+ VN S +YE Sbjct: 111 DTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYEC- 169 Query: 81 KDEDGFLYTVYASQEMFG 98 DG L Y + +G Sbjct: 170 FGSDGKLVLHYCKSQAWG 187 >gi|207028821 RNA binding motif protein 44 [Homo sapiens] Length = 1052 Score = 27.3 bits (59), Expect = 2.6 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Query: 3 SEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVN 62 S++ K+ C K+ + K LP +F+ P+ +N+ TKIIKR L+ + ++N Sbjct: 961 SDQGVKKNC--KQIESAKLLPDTP-VQFIPPNTLNLRSFTKIIKRLAELHPEVSRDHIIN 1017 Query: 63 GPSTVSV 69 V + Sbjct: 1018 ALQEVRI 1024 >gi|50582996 multiple C2 domains, transmembrane 1 isoform S [Homo sapiens] Length = 778 Score = 27.3 bits (59), Expect = 2.6 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 10/50 (20%) Query: 57 FFLLVNGPSTVSVSTPTSEVYEGEKDED----------GFLYTVYASQEM 96 +FL+++G T ++ E E++ED GF+ +YA QE+ Sbjct: 617 YFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQEV 666 >gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo sapiens] Length = 999 Score = 27.3 bits (59), Expect = 2.6 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 10/50 (20%) Query: 57 FFLLVNGPSTVSVSTPTSEVYEGEKDED----------GFLYTVYASQEM 96 +FL+++G T ++ E E++ED GF+ +YA QE+ Sbjct: 838 YFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQEV 887 >gi|157694524 plexin D1 [Homo sapiens] Length = 1925 Score = 26.6 bits (57), Expect = 4.5 Identities = 12/48 (25%), Positives = 25/48 (52%) Query: 47 RCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQ 94 R L++N N++ ++ TV+ P V + + + G+LY + + Q Sbjct: 493 RLLKINLNESMQVVSRRVVTVAYGEPVHHVMQFDPADSGYLYLMTSHQ 540 >gi|94536836 2-oxoglutarate and iron-dependent oxygenase domain containing 1 [Homo sapiens] Length = 542 Score = 26.2 bits (56), Expect = 5.9 Identities = 10/24 (41%), Positives = 19/24 (79%) Query: 39 SELTKIIKRCLRLNANQAFFLLVN 62 S+L +I+K C++L ++A FLL++ Sbjct: 335 SKLPEILKECMKLFRSEALFLLLS 358 >gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens] Length = 4544 Score = 25.8 bits (55), Expect = 7.7 Identities = 9/25 (36%), Positives = 15/25 (60%) Query: 60 LVNGPSTVSVSTPTSEVYEGEKDED 84 + NG V + PT ++YEG + +D Sbjct: 4459 MTNGAMNVEIGNPTYKMYEGGEPDD 4483 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,741,860 Number of Sequences: 37866 Number of extensions: 130449 Number of successful extensions: 338 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 310 Number of HSP's gapped (non-prelim): 23 length of query: 105 length of database: 18,247,518 effective HSP length: 76 effective length of query: 29 effective length of database: 15,369,702 effective search space: 445721358 effective search space used: 445721358 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.