Guide to the Human Genome
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Search of human proteins with 239744738

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744738 PREDICTED: similar to microtubule-associated
proteins 1A/1B light chain 3 [Homo sapiens]
         (105 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755918 PREDICTED: similar to microtubule-associated protei...   214   9e-57
gi|239750436 PREDICTED: similar to microtubule-associated protei...   214   9e-57
gi|239744738 PREDICTED: similar to microtubule-associated protei...   214   9e-57
gi|12383056 microtubule-associated proteins 1A/1B light chain 3 ...   154   2e-38
gi|148277548 microtubule-associated protein 1 light chain 3 beta...   150   2e-37
gi|169183885 PREDICTED: similar to microtubule-associated protei...   141   1e-34
gi|169179756 PREDICTED: similar to microtubule-associated protei...   141   1e-34
gi|169180155 PREDICTED: similar to microtubule-associated protei...   141   1e-34
gi|31563518 microtubule-associated protein 1 light chain 3 alpha...   134   2e-32
gi|14210522 microtubule-associated protein 1 light chain 3 alpha...   134   2e-32
gi|51972260 microtubule-associated protein 1 light chain 3 gamma...    91   3e-19
gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo sapi...    60   4e-10
gi|13899219 GABA(A) receptor-associated protein like 1 [Homo sap...    51   2e-07
gi|6005764 GABA(A) receptor-associated protein [Homo sapiens]          49   1e-06
gi|153791466 AMIGO protein [Homo sapiens]                              33   0.063
gi|4507537 nuclear receptor subfamily 2, group E, member 1 [Homo...    29   0.69 
gi|38261969 APG12 autophagy 12-like [Homo sapiens]                     28   2.0  
gi|207028821 RNA binding motif protein 44 [Homo sapiens]               27   2.6  
gi|50582996 multiple C2 domains, transmembrane 1 isoform S [Homo...    27   2.6  
gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom...    27   2.6  
gi|157694524 plexin D1 [Homo sapiens]                                  27   4.5  
gi|94536836 2-oxoglutarate and iron-dependent oxygenase domain c...    26   5.9  
gi|126012562 low density lipoprotein-related protein 1 [Homo sap...    26   7.7  

>gi|239755918 PREDICTED: similar to microtubule-associated protein 1
           light chain 3 beta [Homo sapiens]
          Length = 105

 Score =  214 bits (546), Expect = 9e-57
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60
           MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL
Sbjct: 1   MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60

Query: 61  VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105
           VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN
Sbjct: 61  VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105


>gi|239750436 PREDICTED: similar to microtubule-associated protein 1
           light chain 3 beta [Homo sapiens]
          Length = 105

 Score =  214 bits (546), Expect = 9e-57
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60
           MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL
Sbjct: 1   MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60

Query: 61  VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105
           VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN
Sbjct: 61  VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105


>gi|239744738 PREDICTED: similar to microtubule-associated proteins
           1A/1B light chain 3 [Homo sapiens]
          Length = 105

 Score =  214 bits (546), Expect = 9e-57
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60
           MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL
Sbjct: 1   MLSEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLL 60

Query: 61  VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105
           VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN
Sbjct: 61  VNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSVYN 105


>gi|12383056 microtubule-associated proteins 1A/1B light chain 3
           [Homo sapiens]
          Length = 125

 Score =  154 bits (388), Expect = 2e-38
 Identities = 86/125 (68%), Positives = 91/125 (72%), Gaps = 22/125 (17%)

Query: 1   MLSEKTFKQCCTFK----------------------RYQGEKELPVLDKTKFLVPDHVNM 38
           M SEKTFKQ  TF+                      RY+GEK+LPVLDKTKFLVPDHVNM
Sbjct: 1   MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60

Query: 39  SELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFG 98
           SEL KII+R L+LNANQAFFLLVNG S VSVSTP SEVYE EKDEDGFLY VYASQE FG
Sbjct: 61  SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120

Query: 99  RKLSV 103
            KLSV
Sbjct: 121 MKLSV 125


>gi|148277548 microtubule-associated protein 1 light chain 3 beta 2
           [Homo sapiens]
          Length = 125

 Score =  150 bits (379), Expect = 2e-37
 Identities = 85/125 (68%), Positives = 90/125 (72%), Gaps = 22/125 (17%)

Query: 1   MLSEKTFKQCCTFK----------------------RYQGEKELPVLDKTKFLVPDHVNM 38
           M SEKTFKQ  TF+                      RY+GEK+LPVLDKTKFLVPDHVNM
Sbjct: 1   MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60

Query: 39  SELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFG 98
           SEL KII+R L+LNANQAFFLLVNG S VSVSTP SEVYE EKDEDGFLY V ASQE FG
Sbjct: 61  SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120

Query: 99  RKLSV 103
            KLSV
Sbjct: 121 MKLSV 125


>gi|169183885 PREDICTED: similar to microtubule-associated proteins
           1A/1B light chain 3 [Homo sapiens]
          Length = 157

 Score =  141 bits (355), Expect = 1e-34
 Identities = 81/124 (65%), Positives = 88/124 (70%), Gaps = 23/124 (18%)

Query: 3   SEKTFKQCCTFK---------------------RYQGEKELPVLDKTKFLVPD--HVNMS 39
           +EKTFKQ  TF+                     RYQGEK+LPVLDKTKFLVPD   VNMS
Sbjct: 34  AEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMS 93

Query: 40  ELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGR 99
           EL KII+R L+LNANQAF L+VNG S VSVSTP SEVYE EKDEDGFLY VYASQE +G 
Sbjct: 94  ELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYGM 153

Query: 100 KLSV 103
           KLSV
Sbjct: 154 KLSV 157


>gi|169179756 PREDICTED: similar to microtubule-associated proteins
           1A/1B light chain 3 [Homo sapiens]
          Length = 377

 Score =  141 bits (355), Expect = 1e-34
 Identities = 81/124 (65%), Positives = 88/124 (70%), Gaps = 23/124 (18%)

Query: 3   SEKTFKQCCTFK---------------------RYQGEKELPVLDKTKFLVPD--HVNMS 39
           +EKTFKQ  TF+                     RYQGEK+LPVLDKTKFLVPD   VNMS
Sbjct: 254 AEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMS 313

Query: 40  ELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGR 99
           EL KII+R L+LNANQAF L+VNG S VSVSTP SEVYE EKDEDGFLY VYASQE +G 
Sbjct: 314 ELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYGM 373

Query: 100 KLSV 103
           KLSV
Sbjct: 374 KLSV 377


>gi|169180155 PREDICTED: similar to microtubule-associated proteins
           1A/1B light chain 3 [Homo sapiens]
          Length = 377

 Score =  141 bits (355), Expect = 1e-34
 Identities = 81/124 (65%), Positives = 88/124 (70%), Gaps = 23/124 (18%)

Query: 3   SEKTFKQCCTFK---------------------RYQGEKELPVLDKTKFLVPD--HVNMS 39
           +EKTFKQ  TF+                     RYQGEK+LPVLDKTKFLVPD   VNMS
Sbjct: 254 AEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMS 313

Query: 40  ELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGR 99
           EL KII+R L+LNANQAF L+VNG S VSVSTP SEVYE EKDEDGFLY VYASQE +G 
Sbjct: 314 ELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYGM 373

Query: 100 KLSV 103
           KLSV
Sbjct: 374 KLSV 377


>gi|31563518 microtubule-associated protein 1 light chain 3 alpha
           isoform b [Homo sapiens]
          Length = 125

 Score =  134 bits (336), Expect = 2e-32
 Identities = 66/85 (77%), Positives = 74/85 (87%)

Query: 14  KRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT 73
           +RY+GEK+LPVLDKTKFLVPDHVNMSEL KII+R L+LN  QAFFLLVN  S VSVSTP 
Sbjct: 40  ERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPI 99

Query: 74  SEVYEGEKDEDGFLYTVYASQEMFG 98
           +++YE EKDEDGFLY VYASQE FG
Sbjct: 100 ADIYEQEKDEDGFLYMVYASQETFG 124


>gi|14210522 microtubule-associated protein 1 light chain 3 alpha
           isoform a [Homo sapiens]
          Length = 121

 Score =  134 bits (336), Expect = 2e-32
 Identities = 66/85 (77%), Positives = 74/85 (87%)

Query: 14  KRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT 73
           +RY+GEK+LPVLDKTKFLVPDHVNMSEL KII+R L+LN  QAFFLLVN  S VSVSTP 
Sbjct: 36  ERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPI 95

Query: 74  SEVYEGEKDEDGFLYTVYASQEMFG 98
           +++YE EKDEDGFLY VYASQE FG
Sbjct: 96  ADIYEQEKDEDGFLYMVYASQETFG 120


>gi|51972260 microtubule-associated protein 1 light chain 3 gamma
           [Homo sapiens]
          Length = 147

 Score = 90.5 bits (223), Expect = 3e-19
 Identities = 45/85 (52%), Positives = 57/85 (67%)

Query: 14  KRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT 73
           +RY  E  LP LDKTKFLVP  + M++   II+  + L A +AF+LLVN  S VS+S   
Sbjct: 42  ERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATM 101

Query: 74  SEVYEGEKDEDGFLYTVYASQEMFG 98
           +E+Y   KDEDGF+Y  YASQE FG
Sbjct: 102 AEIYRDYKDEDGFVYMTYASQETFG 126


>gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo
           sapiens]
          Length = 117

 Score = 60.1 bits (144), Expect = 4e-10
 Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 25  LDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT-SEVYEGEKDE 83
           +DK K+LVP  + +++   II++ ++L + +A FL V+   TV  S+ T  ++YE EKDE
Sbjct: 44  IDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVD--KTVPQSSLTMGQLYEKEKDE 101

Query: 84  DGFLYTVYASQEMFG 98
           DGFLY  Y+ +  FG
Sbjct: 102 DGFLYVAYSGENTFG 116


>gi|13899219 GABA(A) receptor-associated protein like 1 [Homo
           sapiens]
          Length = 117

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 22  LPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEK 81
           +P LDK K+LVP  + + +   +I++ + L    A F  VN  +    S    ++YE   
Sbjct: 41  VPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNH 99

Query: 82  DEDGFLYTVYASQEMFGR 99
           +ED FLY  Y+ + ++G+
Sbjct: 100 EEDYFLYVAYSDESVYGK 117


>gi|6005764 GABA(A) receptor-associated protein [Homo sapiens]
          Length = 117

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 9/78 (11%)

Query: 25  LDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTS----EVYEGE 80
           LDK K+LVP  + + +   +I++ + L A  A F  VN     +V  PTS    ++Y+  
Sbjct: 44  LDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVN-----NVIPPTSATMGQLYQEH 98

Query: 81  KDEDGFLYTVYASQEMFG 98
            +ED FLY  Y+ + ++G
Sbjct: 99  HEEDFFLYIAYSDESVYG 116


>gi|153791466 AMIGO protein [Homo sapiens]
          Length = 493

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 66  TVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGRKLSV 103
           TVSVS   S +++  + EDG +YT YA  E F   LSV
Sbjct: 317 TVSVSKDGSLLFQQVQVEDGGVYTCYAMGETFNETLSV 354


>gi|4507537 nuclear receptor subfamily 2, group E, member 1 [Homo
           sapiens]
          Length = 385

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 45  IKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDG 85
           +K+CL +N N+       GP T ++    +  + G K+E+G
Sbjct: 75  LKKCLEVNMNKDAVQHERGPRTSTIRKQVALYFRGHKEENG 115


>gi|38261969 APG12 autophagy 12-like [Homo sapiens]
          Length = 187

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 21  ELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGE 80
           + P++   K+ V     +  L   IK+ L+L A++  F+ VN     S       +YE  
Sbjct: 111 DTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYEC- 169

Query: 81  KDEDGFLYTVYASQEMFG 98
              DG L   Y   + +G
Sbjct: 170 FGSDGKLVLHYCKSQAWG 187


>gi|207028821 RNA binding motif protein 44 [Homo sapiens]
          Length = 1052

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 3    SEKTFKQCCTFKRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVN 62
            S++  K+ C  K+ +  K LP     +F+ P+ +N+   TKIIKR   L+   +   ++N
Sbjct: 961  SDQGVKKNC--KQIESAKLLPDTP-VQFIPPNTLNLRSFTKIIKRLAELHPEVSRDHIIN 1017

Query: 63   GPSTVSV 69
                V +
Sbjct: 1018 ALQEVRI 1024


>gi|50582996 multiple C2 domains, transmembrane 1 isoform S [Homo
           sapiens]
          Length = 778

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 10/50 (20%)

Query: 57  FFLLVNGPSTVSVSTPTSEVYEGEKDED----------GFLYTVYASQEM 96
           +FL+++G       T   ++ E E++ED          GF+  +YA QE+
Sbjct: 617 YFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQEV 666


>gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo
           sapiens]
          Length = 999

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 10/50 (20%)

Query: 57  FFLLVNGPSTVSVSTPTSEVYEGEKDED----------GFLYTVYASQEM 96
           +FL+++G       T   ++ E E++ED          GF+  +YA QE+
Sbjct: 838 YFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQEV 887


>gi|157694524 plexin D1 [Homo sapiens]
          Length = 1925

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/48 (25%), Positives = 25/48 (52%)

Query: 47  RCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQ 94
           R L++N N++  ++     TV+   P   V + +  + G+LY + + Q
Sbjct: 493 RLLKINLNESMQVVSRRVVTVAYGEPVHHVMQFDPADSGYLYLMTSHQ 540


>gi|94536836 2-oxoglutarate and iron-dependent oxygenase domain
           containing 1 [Homo sapiens]
          Length = 542

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 10/24 (41%), Positives = 19/24 (79%)

Query: 39  SELTKIIKRCLRLNANQAFFLLVN 62
           S+L +I+K C++L  ++A FLL++
Sbjct: 335 SKLPEILKECMKLFRSEALFLLLS 358


>gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens]
          Length = 4544

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 60   LVNGPSTVSVSTPTSEVYEGEKDED 84
            + NG   V +  PT ++YEG + +D
Sbjct: 4459 MTNGAMNVEIGNPTYKMYEGGEPDD 4483


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,741,860
Number of Sequences: 37866
Number of extensions: 130449
Number of successful extensions: 338
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 23
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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