Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239744720
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744720 PREDICTED: hypothetical protein XP_002343252 [Homo
sapiens]
(220 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750418 PREDICTED: hypothetical protein XP_002347389 [Homo ... 459 e-129
gi|239744720 PREDICTED: hypothetical protein XP_002343252 [Homo ... 459 e-129
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 32 0.56
gi|18702331 OTU domain containing 7A [Homo sapiens] 31 0.95
gi|239757427 PREDICTED: hypothetical protein XP_002345434 [Homo ... 30 1.6
gi|239751944 PREDICTED: hypothetical protein [Homo sapiens] 30 1.6
gi|239746427 PREDICTED: hypothetical protein XP_002344220 [Homo ... 30 1.6
gi|22325388 F-box protein FBG4 isoform 1 [Homo sapiens] 30 1.6
gi|41352705 kinesin family member 3C [Homo sapiens] 30 1.6
gi|219842343 glutamate receptor, metabotropic 5 isoform a precur... 29 2.8
gi|4504143 glutamate receptor, metabotropic 5 isoform b precurso... 29 2.8
gi|113426932 PREDICTED: similar to N-ethylmaleimide-sensitive fa... 29 2.8
gi|239740963 PREDICTED: similar to N-ethylmaleimide-sensitive fa... 29 2.8
gi|18643385 F-box protein FBG4 isoform 2 [Homo sapiens] 29 2.8
gi|16933557 dachsous 1 precursor [Homo sapiens] 29 2.8
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 29 3.6
gi|188497625 3-hydroxyanthranilate 3,4-dioxygenase [Homo sapiens] 29 3.6
gi|225735557 nuclear factor erythroid 2-like 3 [Homo sapiens] 29 3.6
gi|122114658 hypothetical protein LOC23053 [Homo sapiens] 29 3.6
gi|169216229 PREDICTED: hypothetical protein [Homo sapiens] 28 4.7
gi|169216933 PREDICTED: hypothetical protein [Homo sapiens] 28 4.7
gi|195234779 hypothetical protein LOC60686 [Homo sapiens] 28 4.7
gi|195234776 hypothetical protein LOC60686 [Homo sapiens] 28 4.7
gi|195233774 hypothetical protein LOC60686 [Homo sapiens] 28 4.7
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 28 6.1
gi|239753301 PREDICTED: hypothetical protein [Homo sapiens] 28 6.1
gi|239752719 PREDICTED: hypothetical protein [Homo sapiens] 28 6.1
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 28 6.1
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 28 6.1
gi|239741081 PREDICTED: hypothetical protein XP_002342086 [Homo ... 28 6.1
>gi|239750418 PREDICTED: hypothetical protein XP_002347389 [Homo
sapiens]
Length = 220
Score = 459 bits (1180), Expect = e-129
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MAFLEWSRVNQENNWTGLELGKEPETELDTYCHGKFCSYADIWGPRVIRLGQDNQFALSS 60
MAFLEWSRVNQENNWTGLELGKEPETELDTYCHGKFCSYADIWGPRVIRLGQDNQFALSS
Sbjct: 1 MAFLEWSRVNQENNWTGLELGKEPETELDTYCHGKFCSYADIWGPRVIRLGQDNQFALSS 60
Query: 61 NTKIIIWLVTKVSPGSKGSRRGPAACTGSGCSTAGSGGGERRAARSLACSLVEVGPVIRA 120
NTKIIIWLVTKVSPGSKGSRRGPAACTGSGCSTAGSGGGERRAARSLACSLVEVGPVIRA
Sbjct: 61 NTKIIIWLVTKVSPGSKGSRRGPAACTGSGCSTAGSGGGERRAARSLACSLVEVGPVIRA 120
Query: 121 LDVDPPHALDPLPLLVLVQVVGAPRRPACGLQERIVRSPAILGLIQQNVQGLLINPGFGK 180
LDVDPPHALDPLPLLVLVQVVGAPRRPACGLQERIVRSPAILGLIQQNVQGLLINPGFGK
Sbjct: 121 LDVDPPHALDPLPLLVLVQVVGAPRRPACGLQERIVRSPAILGLIQQNVQGLLINPGFGK 180
Query: 181 LHLLLPWSVSSQWHRRWRYNRLQQSSGPDHKRTSSRFHPQ 220
LHLLLPWSVSSQWHRRWRYNRLQQSSGPDHKRTSSRFHPQ
Sbjct: 181 LHLLLPWSVSSQWHRRWRYNRLQQSSGPDHKRTSSRFHPQ 220
>gi|239744720 PREDICTED: hypothetical protein XP_002343252 [Homo
sapiens]
Length = 220
Score = 459 bits (1180), Expect = e-129
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MAFLEWSRVNQENNWTGLELGKEPETELDTYCHGKFCSYADIWGPRVIRLGQDNQFALSS 60
MAFLEWSRVNQENNWTGLELGKEPETELDTYCHGKFCSYADIWGPRVIRLGQDNQFALSS
Sbjct: 1 MAFLEWSRVNQENNWTGLELGKEPETELDTYCHGKFCSYADIWGPRVIRLGQDNQFALSS 60
Query: 61 NTKIIIWLVTKVSPGSKGSRRGPAACTGSGCSTAGSGGGERRAARSLACSLVEVGPVIRA 120
NTKIIIWLVTKVSPGSKGSRRGPAACTGSGCSTAGSGGGERRAARSLACSLVEVGPVIRA
Sbjct: 61 NTKIIIWLVTKVSPGSKGSRRGPAACTGSGCSTAGSGGGERRAARSLACSLVEVGPVIRA 120
Query: 121 LDVDPPHALDPLPLLVLVQVVGAPRRPACGLQERIVRSPAILGLIQQNVQGLLINPGFGK 180
LDVDPPHALDPLPLLVLVQVVGAPRRPACGLQERIVRSPAILGLIQQNVQGLLINPGFGK
Sbjct: 121 LDVDPPHALDPLPLLVLVQVVGAPRRPACGLQERIVRSPAILGLIQQNVQGLLINPGFGK 180
Query: 181 LHLLLPWSVSSQWHRRWRYNRLQQSSGPDHKRTSSRFHPQ 220
LHLLLPWSVSSQWHRRWRYNRLQQSSGPDHKRTSSRFHPQ
Sbjct: 181 LHLLLPWSVSSQWHRRWRYNRLQQSSGPDHKRTSSRFHPQ 220
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 31.6 bits (70), Expect = 0.56
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 75 GSKGSRRGPAACTG--SGCSTAGSG--GGERRAARSLACSLVEVGPVIRA--LDVDPPHA 128
GS G PAA +G + S AGSG GG A A L ++ R+ D A
Sbjct: 3 GSSGGAAAPAASSGPAAAASAAGSGCGGGAGEGAEEAAKDLADIAAFFRSGFRKNDEMKA 62
Query: 129 LDPLPLL 135
+D LP+L
Sbjct: 63 MDVLPIL 69
>gi|18702331 OTU domain containing 7A [Homo sapiens]
Length = 926
Score = 30.8 bits (68), Expect = 0.95
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 62 TKIIIWLVTKVSPGSKGSRRGPAACTGSGCSTAGSGGGERRAARS 106
T++++ L + SPG R AA G TA GGG RRA+ S
Sbjct: 715 TQLVLKLKERPSPGPAAGRAARAAAGG----TASPGGGARRASAS 755
>gi|239757427 PREDICTED: hypothetical protein XP_002345434 [Homo
sapiens]
Length = 184
Score = 30.0 bits (66), Expect = 1.6
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 129 LDPLPLLVLVQVVGAPRRPACGLQERIVR-----SPAILGLIQQNVQGLLINPGFGKLHL 183
L LPLL+L ++ PR P +Q ++R A+LG + Q + L NPG G +HL
Sbjct: 109 LQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGL-ALRQNPGSGLVHL 167
Query: 184 LL 185
L
Sbjct: 168 PL 169
>gi|239751944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 30.0 bits (66), Expect = 1.6
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 129 LDPLPLLVLVQVVGAPRRPACGLQERIVR-----SPAILGLIQQNVQGLLINPGFGKLHL 183
L LPLL+L ++ PR P +Q ++R A+LG + Q + L NPG G +HL
Sbjct: 109 LQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGL-ALRQNPGSGLVHL 167
Query: 184 LL 185
L
Sbjct: 168 PL 169
>gi|239746427 PREDICTED: hypothetical protein XP_002344220 [Homo
sapiens]
Length = 255
Score = 30.0 bits (66), Expect = 1.6
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 129 LDPLPLLVLVQVVGAPRRPACGLQERIVR-----SPAILGLIQQNVQGLLINPGFGKLHL 183
L LPLL+L ++ PR P +Q ++R A+LG + Q + L NPG G +HL
Sbjct: 180 LQRLPLLLLPLLLPQPRYPVRLVQPPVLRLVPGHQLAVLGGVLQGL-ALRQNPGSGLVHL 238
Query: 184 LL 185
L
Sbjct: 239 PL 240
>gi|22325388 F-box protein FBG4 isoform 1 [Homo sapiens]
Length = 287
Score = 30.0 bits (66), Expect = 1.6
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 111 LVEVGPVI--RALDVDPPHALDPLPLLVLVQVVG--APR------RPACGLQERIVRSPA 160
L+E+G + R L DP ALD LP +LVQV+ PR RP C IV P
Sbjct: 7 LLEMGARLSRRRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPT 66
Query: 161 I 161
+
Sbjct: 67 V 67
>gi|41352705 kinesin family member 3C [Homo sapiens]
Length = 793
Score = 30.0 bits (66), Expect = 1.6
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 12/109 (11%)
Query: 20 LGKEPETELDTYCHGKF-----CSYADIWGPRVIRLGQDNQFALSSNTKIIIWLVTKVSP 74
+G E+ + H F CS G IR+G+ N L+ + + K P
Sbjct: 204 VGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNLVDLAGSER-----QNKAGP 258
Query: 75 GSKGSRRGPAACTGSGC--STAGSGGGERRAARSLACSLVEVGPVIRAL 121
+ G P++ G G S G+GG + A + SL +G VI AL
Sbjct: 259 NTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAAL 307
>gi|219842343 glutamate receptor, metabotropic 5 isoform a precursor
[Homo sapiens]
Length = 1212
Score = 29.3 bits (64), Expect = 2.8
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 7/103 (6%)
Query: 75 GSKGSRRGPAACTGSGCSTAGSGGGERRAARSLACSLVEVGPVIRALDVDPPHALDPLPL 134
G+ GS G A G+GC+ AG GG E A A L +V P P P+
Sbjct: 966 GAGGSAGGVGATGGAGCAGAGPGGPESPDAGPKA--LYDVAEAEEHFPA-PARPRSPSPI 1022
Query: 135 LVLVQVVGAPRRPACGL----QERIVRSPAILGLIQQNVQGLL 173
L G+ R + E + RS + G + + + ++
Sbjct: 1023 STLSHRAGSASRTDDDVPSLHSEPVARSSSSQGSLMEQISSVV 1065
>gi|4504143 glutamate receptor, metabotropic 5 isoform b precursor
[Homo sapiens]
Length = 1180
Score = 29.3 bits (64), Expect = 2.8
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 7/103 (6%)
Query: 75 GSKGSRRGPAACTGSGCSTAGSGGGERRAARSLACSLVEVGPVIRALDVDPPHALDPLPL 134
G+ GS G A G+GC+ AG GG E A A L +V P P P+
Sbjct: 934 GAGGSAGGVGATGGAGCAGAGPGGPESPDAGPKA--LYDVAEAEEHFPA-PARPRSPSPI 990
Query: 135 LVLVQVVGAPRRPACGL----QERIVRSPAILGLIQQNVQGLL 173
L G+ R + E + RS + G + + + ++
Sbjct: 991 STLSHRAGSASRTDDDVPSLHSEPVARSSSSQGSLMEQISSVV 1033
>gi|113426932 PREDICTED: similar to N-ethylmaleimide-sensitive
factor [Homo sapiens]
Length = 563
Score = 29.3 bits (64), Expect = 2.8
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 74 PGSKGSRRGPAACT---GSGCSTAGSGGGERRAA 104
PG++ S R AC G G AG+G ERRAA
Sbjct: 31 PGTRASSRRLHACARAGGGGARAAGAGFAERRAA 64
>gi|239740963 PREDICTED: similar to N-ethylmaleimide-sensitive
factor [Homo sapiens]
Length = 405
Score = 29.3 bits (64), Expect = 2.8
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 74 PGSKGSRRGPAACT---GSGCSTAGSGGGERRAA 104
PG++ S R AC G G AG+G ERRAA
Sbjct: 31 PGTRASSRRLHACARAGGGGARAAGAGFAERRAA 64
>gi|18643385 F-box protein FBG4 isoform 2 [Homo sapiens]
Length = 278
Score = 29.3 bits (64), Expect = 2.8
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 119 RALDVDPPHALDPLPLLVLVQVVG--APR------RPACGLQERIVRSPAI 161
R L DP ALD LP +LVQV+ PR RP C IV P +
Sbjct: 8 RRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTV 58
>gi|16933557 dachsous 1 precursor [Homo sapiens]
Length = 3298
Score = 29.3 bits (64), Expect = 2.8
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 88 GSGCSTAGSGGGERR-AARSLACSLVEVGPVIRALDVDPPHALD---------PLPLLVL 137
GSG +T+G GG RR A R L ++ GP+ + P +D P L+L
Sbjct: 2878 GSGTATSGGGGRTRREAPRELRLEVIARGPLPGSRSATVPVTVDITHTALGLAPDLNLLL 2937
Query: 138 VQVVGAPRRPACGLQERIVRSPAILGLIQQNVQGLLINPG 177
V V A + G+ + + +LGL++ + PG
Sbjct: 2938 VGAVAA----SLGVVVVLALAALVLGLVRARSRKAEAAPG 2973
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 28.9 bits (63), Expect = 3.6
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 75 GSKGSRRGPAACTGSGCSTAGSGGG-----ERRAARSLACSLVEVGPVIRALDVDPPHAL 129
GS+G G G G AG+GGG A RS + L V+ V PP
Sbjct: 410 GSRGGGGGGGGGGGGGGGGAGAGGGSDFGCSAAAPRSESGFLPYSAAVLSKTAVSPPDQR 469
Query: 130 DPLPL 134
D PL
Sbjct: 470 DEAPL 474
>gi|188497625 3-hydroxyanthranilate 3,4-dioxygenase [Homo sapiens]
Length = 286
Score = 28.9 bits (63), Expect = 3.6
Identities = 20/75 (26%), Positives = 32/75 (42%)
Query: 39 YADIWGPRVIRLGQDNQFALSSNTKIIIWLVTKVSPGSKGSRRGPAACTGSGCSTAGSGG 98
+ D + +VI GQ + L N + +W + S + G RR A S AG+
Sbjct: 203 FGDTYETQVIAYGQGSSEGLRQNVDVWLWQLEGSSVVTMGGRRLSLAPDDSLLVLAGTSY 262
Query: 99 GERRAARSLACSLVE 113
R S+A S+ +
Sbjct: 263 AWERTQGSVALSVTQ 277
>gi|225735557 nuclear factor erythroid 2-like 3 [Homo sapiens]
Length = 694
Score = 28.9 bits (63), Expect = 3.6
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 62 TKIIIWLVTKVSPGSKGSRRG------PAACTGSGCSTAGS------GGGERRAARS 106
T + WLV V+ GS G ++ G+G S G GGG+ RAARS
Sbjct: 106 TSVDAWLVHSVAAGSADEAHGLLGAAAASSTGGAGASVDGGSQAVQGGGGDPRAARS 162
>gi|122114658 hypothetical protein LOC23053 [Homo sapiens]
Length = 1842
Score = 28.9 bits (63), Expect = 3.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 67 WLVTKVSPGSKGSRRGPAACTGSGCSTAGSGG 98
WL + + GS +R G +C+ SG G G
Sbjct: 1427 WLYEQTAGGSSTAREGATSCSASGIRAGGEAG 1458
>gi|169216229 PREDICTED: hypothetical protein [Homo sapiens]
Length = 163
Score = 28.5 bits (62), Expect = 4.7
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 74 PGSKGSRRGPAACTGSGCST---AGSGGGERRAARSLACSLVEVGPVIR-ALDVDPP 126
PG++GS R P A S CS G GG RA R + S P +R D PP
Sbjct: 55 PGAEGSSRFPKAQGRSRCSQQIGMGRGGLAARAPRQDSNSAEAPSPQVRGGKDFQPP 111
>gi|169216933 PREDICTED: hypothetical protein [Homo sapiens]
Length = 163
Score = 28.5 bits (62), Expect = 4.7
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 74 PGSKGSRRGPAACTGSGCST---AGSGGGERRAARSLACSLVEVGPVIR-ALDVDPP 126
PG++GS R P A S CS G GG RA R + S P +R D PP
Sbjct: 55 PGAEGSSRFPKAQGRSRCSQQIGMGRGGLAARAPRQDSNSAEAPSPQVRGGKDFQPP 111
>gi|195234779 hypothetical protein LOC60686 [Homo sapiens]
Length = 538
Score = 28.5 bits (62), Expect = 4.7
Identities = 16/37 (43%), Positives = 16/37 (43%)
Query: 74 PGSKGSRRGPAACTGSGCSTAGSGGGERRAARSLACS 110
PGS G R T S C T GSG R R L S
Sbjct: 270 PGSTGELRHSLGLTVSPCRTRGSGQKNSRRKRDLVLS 306
>gi|195234776 hypothetical protein LOC60686 [Homo sapiens]
Length = 538
Score = 28.5 bits (62), Expect = 4.7
Identities = 16/37 (43%), Positives = 16/37 (43%)
Query: 74 PGSKGSRRGPAACTGSGCSTAGSGGGERRAARSLACS 110
PGS G R T S C T GSG R R L S
Sbjct: 270 PGSTGELRHSLGLTVSPCRTRGSGQKNSRRKRDLVLS 306
>gi|195233774 hypothetical protein LOC60686 [Homo sapiens]
Length = 538
Score = 28.5 bits (62), Expect = 4.7
Identities = 16/37 (43%), Positives = 16/37 (43%)
Query: 74 PGSKGSRRGPAACTGSGCSTAGSGGGERRAARSLACS 110
PGS G R T S C T GSG R R L S
Sbjct: 270 PGSTGELRHSLGLTVSPCRTRGSGQKNSRRKRDLVLS 306
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 28.1 bits (61), Expect = 6.1
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 74 PGSKGSRR-GPAACTGSGCSTAGSGGGERRAARSLACSLVEVGPVIRALDVDPP---HAL 129
P G+R+ GP T AG+G R AR L V R L + PP
Sbjct: 201 PHHTGARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSPPGRSRLF 260
Query: 130 DPLPLLVLVQVVGAPRRPA 148
P L + P RPA
Sbjct: 261 SPRSSLARPPLRFPPARPA 279
>gi|239753301 PREDICTED: hypothetical protein [Homo sapiens]
Length = 191
Score = 28.1 bits (61), Expect = 6.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 6 WSRVNQENNWTGLELGKEPETEL 28
W + +E W GLELG+ PE L
Sbjct: 151 WGQPEEEGLWDGLELGQLPEAGL 173
>gi|239752719 PREDICTED: hypothetical protein [Homo sapiens]
Length = 158
Score = 28.1 bits (61), Expect = 6.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 6 WSRVNQENNWTGLELGKEPETEL 28
W + +E W GLELG+ PE L
Sbjct: 118 WGQPEEEGLWDGLELGQLPEAGL 140
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 28.1 bits (61), Expect = 6.1
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 74 PGSKGSRR-GPAACTGSGCSTAGSGGGERRAARSLACSLVEVGPVIRALDVDPP---HAL 129
P G+R+ GP T AG+G R AR L V R L + PP
Sbjct: 201 PHHTGARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSPPGRSRLF 260
Query: 130 DPLPLLVLVQVVGAPRRPA 148
P L + P RPA
Sbjct: 261 SPRSSLARPPLRFPPARPA 279
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 28.1 bits (61), Expect = 6.1
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 74 PGSKGSRR-GPAACTGSGCSTAGSGGGERRAARSLACSLVEVGPVIRALDVDPP---HAL 129
P G+R+ GP T AG+G R AR L V R L + PP
Sbjct: 201 PHHTGARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSPPGRSRLF 260
Query: 130 DPLPLLVLVQVVGAPRRPA 148
P L + P RPA
Sbjct: 261 SPRSSLARPPLRFPPARPA 279
>gi|239741081 PREDICTED: hypothetical protein XP_002342086 [Homo
sapiens]
Length = 155
Score = 28.1 bits (61), Expect = 6.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 6 WSRVNQENNWTGLELGKEPETEL 28
W + +E W GLELG+ PE L
Sbjct: 115 WGQPEEEELWDGLELGQLPEAGL 137
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,870,912
Number of Sequences: 37866
Number of extensions: 470875
Number of successful extensions: 1889
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1863
Number of HSP's gapped (non-prelim): 46
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.