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Search of human proteins with 239744535
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo
sapiens]
(257 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750235 PREDICTED: hypothetical protein [Homo sapiens] 519 e-147
gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo ... 519 e-147
gi|239755717 PREDICTED: hypothetical protein [Homo sapiens] 344 5e-95
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 47 2e-05
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 47 2e-05
gi|148613878 acrosin precursor [Homo sapiens] 47 2e-05
gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens] 46 3e-05
gi|169163027 PREDICTED: similar to Putative acrosin-like proteas... 46 4e-05
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 44 1e-04
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 44 1e-04
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 44 1e-04
gi|55750053 atrophin-1 [Homo sapiens] 44 2e-04
gi|55750041 atrophin-1 [Homo sapiens] 44 2e-04
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 44 2e-04
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 44 2e-04
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 43 2e-04
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 43 2e-04
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 42 7e-04
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 42 7e-04
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 41 9e-04
gi|239756825 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|239751326 PREDICTED: hypothetical protein XP_002347792 [Homo ... 41 0.001
gi|239745825 PREDICTED: hypothetical protein XP_002343558 [Homo ... 41 0.001
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 41 0.001
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 40 0.002
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 40 0.002
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 40 0.002
gi|150170670 piccolo isoform 2 [Homo sapiens] 40 0.002
gi|150378539 piccolo isoform 1 [Homo sapiens] 40 0.002
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 40 0.002
>gi|239750235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 519 bits (1336), Expect = e-147
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60
MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR
Sbjct: 1 MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60
Query: 61 EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL 120
EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL
Sbjct: 61 EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL 120
Query: 121 LTPFLLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSS 180
LTPFLLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSS
Sbjct: 121 LTPFLLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSS 180
Query: 181 SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS 240
SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS
Sbjct: 181 SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS 240
Query: 241 SSSSSFPALPLLPHTLK 257
SSSSSFPALPLLPHTLK
Sbjct: 241 SSSSSFPALPLLPHTLK 257
>gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo
sapiens]
Length = 257
Score = 519 bits (1336), Expect = e-147
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60
MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR
Sbjct: 1 MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60
Query: 61 EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL 120
EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL
Sbjct: 61 EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL 120
Query: 121 LTPFLLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSS 180
LTPFLLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSS
Sbjct: 121 LTPFLLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSS 180
Query: 181 SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS 240
SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS
Sbjct: 181 SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS 240
Query: 241 SSSSSFPALPLLPHTLK 257
SSSSSFPALPLLPHTLK
Sbjct: 241 SSSSSFPALPLLPHTLK 257
>gi|239755717 PREDICTED: hypothetical protein [Homo sapiens]
Length = 187
Score = 344 bits (882), Expect = 5e-95
Identities = 185/257 (71%), Positives = 185/257 (71%), Gaps = 70/257 (27%)
Query: 1 MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60
MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR
Sbjct: 1 MSSSRAKNCHHAKGFWTLGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGR 60
Query: 61 EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLLLLL 120
EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLL
Sbjct: 61 EGKVRGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSPCLSGCLLL--- 117
Query: 121 LTPFLLLHLLLLPLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSS 180
LLLL P FLLL L
Sbjct: 118 -------------LLLLTP-----------------FLLLXL------------------ 129
Query: 181 SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS 240
PPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS
Sbjct: 130 -------------------PPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSS 170
Query: 241 SSSSSFPALPLLPHTLK 257
SSSSSFPALPLLPHTLK
Sbjct: 171 SSSSSFPALPLLPHTLK 187
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 47.0 bits (110), Expect = 2e-05
Identities = 23/33 (69%), Positives = 25/33 (75%), Gaps = 4/33 (12%)
Query: 174 PSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPP 206
P +PSS+SS SPS SPSSSSP PPPPPPP
Sbjct: 186 PPPAPSSASS----SPSPSPSSSSPSPPPPPPP 214
Score = 41.6 bits (96), Expect = 7e-04
Identities = 19/32 (59%), Positives = 22/32 (68%)
Query: 174 PSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPP 205
P+ P+ SS+ S SPS S SS SP PPPPPP
Sbjct: 184 PAPPPAPSSASSSPSPSPSSSSPSPPPPPPPP 215
Score = 39.7 bits (91), Expect = 0.003
Identities = 19/34 (55%), Positives = 20/34 (58%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSF 208
S+S S S SPS SSPS P P PP PP P F
Sbjct: 192 SASSSPSPSPSSSSPSPPPPPPPPAPPAPPAPRF 225
Score = 37.4 bits (85), Expect = 0.013
Identities = 19/32 (59%), Positives = 20/32 (62%)
Query: 176 SSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPS 207
SS SSS SPS SS S SP P P PP PP+
Sbjct: 191 SSASSSPSPSPSSSSPSPPPPPPPPAPPAPPA 222
Score = 34.3 bits (77), Expect = 0.11
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 174 PSSSPSSSSSPSYSSPSSSPSSSSPLPP-PPPPP 206
P + S+SSSPS S SSSPS P PP PP P
Sbjct: 187 PPAPSSASSSPSPSPSSSSPSPPPPPPPPAPPAP 220
Score = 30.4 bits (67), Expect = 1.6
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 155 PLFLLLPLFLPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSS 214
P+ L +P LP + SP S+SS + + + P PPP PS +SSS S
Sbjct: 139 PIPLPVPSLLPRLRAWRTGKTVSPQSNSSRPTCARHLTLGTGDGGPAPPPAPSSASSSPS 198
Query: 215 SFP 217
P
Sbjct: 199 PSP 201
Score = 30.0 bits (66), Expect = 2.1
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 177 SPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
S + P S+PSS P PP PP S S SSSSS
Sbjct: 791 SSKKARPPKESAPSSGP------PPKPPVSSGSGSSSSS 823
Score = 28.5 bits (62), Expect = 6.0
Identities = 17/35 (48%), Positives = 19/35 (54%)
Query: 181 SSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
SS + S+PSS P PP S SSSSSSS
Sbjct: 791 SSKKARPPKESAPSSGPPPKPPVSSGSGSSSSSSS 825
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 46.6 bits (109), Expect = 2e-05
Identities = 38/72 (52%), Positives = 40/72 (55%), Gaps = 15/72 (20%)
Query: 174 PSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSF 233
P+SS SSSSS S SS SSS SSSS S SSSSSSS SS
Sbjct: 2612 PASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------SSS 2656
Query: 234 SSSTFSSSSSSS 245
SSS+ SSSSSSS
Sbjct: 2657 SSSSSSSSSSSS 2668
Score = 44.7 bits (104), Expect = 8e-05
Identities = 36/71 (50%), Positives = 40/71 (56%), Gaps = 15/71 (21%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFS 234
++SP+SSSS S SS SSS SSSS S SSSSSSS SS S
Sbjct: 2609 AASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------SSSS 2653
Query: 235 SSTFSSSSSSS 245
SS+ SSSSSSS
Sbjct: 2654 SSSSSSSSSSS 2664
Score = 40.4 bits (93), Expect = 0.002
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 15/71 (21%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFS 234
S++ S ++SP+ SS SSS SSSS S SSSSSSS SS S
Sbjct: 2603 SAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------SSSS 2647
Query: 235 SSTFSSSSSSS 245
SS+ SSSSSSS
Sbjct: 2648 SSSSSSSSSSS 2658
Score = 37.7 bits (86), Expect = 0.010
Identities = 26/41 (63%), Positives = 26/41 (63%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
SSS SSSSS S SS SSS SSSS S SSSSSSS
Sbjct: 2629 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2669
Score = 37.7 bits (86), Expect = 0.010
Identities = 26/41 (63%), Positives = 26/41 (63%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
SSS SSSSS S SS SSS SSSS S SSSSSSS
Sbjct: 2630 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2670
Score = 37.7 bits (86), Expect = 0.010
Identities = 26/41 (63%), Positives = 26/41 (63%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
SSS SSSSS S SS SSS SSSS S SSSSSSS
Sbjct: 2631 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2671
Score = 36.6 bits (83), Expect = 0.022
Identities = 25/41 (60%), Positives = 26/41 (63%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
SSS SSSSS S SS SSS SSSS S SSSSSS+
Sbjct: 2632 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 2672
Score = 36.2 bits (82), Expect = 0.029
Identities = 35/71 (49%), Positives = 35/71 (49%), Gaps = 23/71 (32%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFS 234
SSS SSSSS S SS SSS SSSS S SSSSSSS SS S
Sbjct: 2633 SSSSSSSSSSSSSSSSSSSSSSS--------SSSSSSSSSS---------------SSSS 2669
Query: 235 SSTFSSSSSSS 245
SST SS S
Sbjct: 2670 SSTTDEDSSCS 2680
Score = 32.0 bits (71), Expect = 0.54
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 169 PLFLLPSSSPSSSSSP------SYSSPSSSPSSSSPLPPPPPPPSFSS 210
PL L PSS+P S SP +P + P +P P P PP+F+S
Sbjct: 2361 PLALEPSSTPGSKKSPPEPVDKRAKAPKARP---APPQPSPAPPAFTS 2405
Score = 32.0 bits (71), Expect = 0.54
Identities = 22/43 (51%), Positives = 23/43 (53%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
SSS SSSSS S SS SSS SSSS S SS + P
Sbjct: 2645 SSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAP 2687
Score = 30.8 bits (68), Expect = 1.2
Identities = 37/97 (38%), Positives = 38/97 (39%), Gaps = 41/97 (42%)
Query: 175 SSSPSSSSSPSYSSPSSSPSS--------------------------SSPLPPPPPPPSF 208
SSS SSS S S SS SSS S SS P S
Sbjct: 2559 SSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSS 2618
Query: 209 SSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSSSSSSS 245
SSSSSSS SS SSS+ SSSSSSS
Sbjct: 2619 SSSSSSS---------------SSSSSSSSSSSSSSS 2640
Score = 30.0 bits (66), Expect = 2.1
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
SSS SSSSS S SS + SS S P P+ S+ ++ P
Sbjct: 2658 SSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAALP 2700
Score = 28.5 bits (62), Expect = 6.0
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 181 SSSPSYS---SPSSSPSSSSPLPPPPPP 205
S P+Y+ +PSS P+S P PPP P
Sbjct: 1016 SKPPAYAYPATPSSHPTSPPPASPPPTP 1043
>gi|148613878 acrosin precursor [Homo sapiens]
Length = 421
Score = 46.6 bits (109), Expect = 2e-05
Identities = 24/71 (33%), Positives = 33/71 (46%)
Query: 173 LPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSS 232
LP P++ P S P P +SPLPPPPPPP + SS++ P L L+
Sbjct: 335 LPPRPPAAQPRPPPSPPPPPPPPASPLPPPPPPPPPTPSSTTKLPQGLSFAKRLQQLIEV 394
Query: 233 FSSSTFSSSSS 243
T+S +
Sbjct: 395 LKGKTYSDGKN 405
>gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens]
Length = 666
Score = 46.2 bits (108), Expect = 3e-05
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 178 PSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSST 237
P S P P P+ + PLPPPPPPP P L LLPL LLLL + +
Sbjct: 2 PPGGSGPG-GCPRRPPALAGPLPPPPPPP--------PPPLLPLLPLLLLLLLGAAEGAR 52
Query: 238 FSSSSSSS 245
SSS S++
Sbjct: 53 VSSSLSTT 60
>gi|169163027 PREDICTED: similar to Putative acrosin-like protease
[Homo sapiens]
Length = 355
Score = 45.8 bits (107), Expect = 4e-05
Identities = 24/71 (33%), Positives = 32/71 (45%)
Query: 173 LPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSS 232
LP P++ P S P P SPLPPPPPPP + SS++ P L L+
Sbjct: 269 LPPRPPAAQPRPPPSPPPPPPPPPSPLPPPPPPPPPTPSSTTKLPQGLSFAKRLQQLIEV 328
Query: 233 FSSSTFSSSSS 243
T+S +
Sbjct: 329 LKGKTYSDGKN 339
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 43.9 bits (102), Expect = 1e-04
Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 28/90 (31%)
Query: 174 PSSSPSSSSSPSYSSPSSSPS---SSSPLPP--------PPPPPSFSSSSSSSFPFLLLL 222
P SP S+++ P SP+ S SP+PP P PP+ SSSSS
Sbjct: 805 PCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSS--------- 855
Query: 223 PLFFLLLLSSFSSSTFSSSSSSSFPALPLL 252
SS SSS+FSSSSSSS P+ P L
Sbjct: 856 --------SSSSSSSFSSSSSSSSPSPPPL 877
Score = 40.0 bits (92), Expect = 0.002
Identities = 32/76 (42%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 152 LLLPLFLLLPLFLPLFIPLFLLPSSSP---SSSSSPSYSSPSSSPSSSSPLPPPPPPPSF 208
+L P P +P PL S P SSSSS S SS S S SSSS P PPP +
Sbjct: 821 ILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAI 880
Query: 209 SSSSSSSFPFLLLLPL 224
SS SS LP+
Sbjct: 881 SSVVSSGDNLEASLPM 896
Score = 37.4 bits (85), Expect = 0.013
Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 21/100 (21%)
Query: 165 PLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLP-----------PPPPPPSFSSSSS 213
P +P LP+ S S+S P SP S+ ++ SPLP P PP S++S
Sbjct: 786 PPLLPTVPLPAPSSSASPHPC-PSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAAS 844
Query: 214 SSFPFLLLLPLFFLLLLSSFSSSTFSSSSSSSFPALPLLP 253
P L SS SSS+ SS SSSS + P P
Sbjct: 845 PGPP---------TLSSSSSSSSSSSSFSSSSSSSSPSPP 875
Score = 31.6 bits (70), Expect = 0.71
Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 155 PLFLLLPLFLPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSS 214
PL +L P P P+ + ++S P S SSS SSSS SFSSSSSS
Sbjct: 818 PLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSS--------SSFSSSSSS 869
Query: 215 SFP 217
S P
Sbjct: 870 SSP 872
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 43.9 bits (102), Expect = 1e-04
Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 28/90 (31%)
Query: 174 PSSSPSSSSSPSYSSPSSSPS---SSSPLPP--------PPPPPSFSSSSSSSFPFLLLL 222
P SP S+++ P SP+ S SP+PP P PP+ SSSSS
Sbjct: 1006 PCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSS--------- 1056
Query: 223 PLFFLLLLSSFSSSTFSSSSSSSFPALPLL 252
SS SSS+FSSSSSSS P+ P L
Sbjct: 1057 --------SSSSSSSFSSSSSSSSPSPPPL 1078
Score = 40.0 bits (92), Expect = 0.002
Identities = 32/76 (42%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 152 LLLPLFLLLPLFLPLFIPLFLLPSSSP---SSSSSPSYSSPSSSPSSSSPLPPPPPPPSF 208
+L P P +P PL S P SSSSS S SS S S SSSS P PPP +
Sbjct: 1022 ILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAI 1081
Query: 209 SSSSSSSFPFLLLLPL 224
SS SS LP+
Sbjct: 1082 SSVVSSGDNLEASLPM 1097
Score = 37.4 bits (85), Expect = 0.013
Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 21/100 (21%)
Query: 165 PLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLP-----------PPPPPPSFSSSSS 213
P +P LP+ S S+S P SP S+ ++ SPLP P PP S++S
Sbjct: 987 PPLLPTVPLPAPSSSASPHPC-PSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAAS 1045
Query: 214 SSFPFLLLLPLFFLLLLSSFSSSTFSSSSSSSFPALPLLP 253
P L SS SSS+ SS SSSS + P P
Sbjct: 1046 PGPP---------TLSSSSSSSSSSSSFSSSSSSSSPSPP 1076
Score = 31.6 bits (70), Expect = 0.71
Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 155 PLFLLLPLFLPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSS 214
PL +L P P P+ + ++S P S SSS SSSS SFSSSSSS
Sbjct: 1019 PLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSS--------SSFSSSSSS 1070
Query: 215 SFP 217
S P
Sbjct: 1071 SSP 1073
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 43.9 bits (102), Expect = 1e-04
Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 28/90 (31%)
Query: 174 PSSSPSSSSSPSYSSPSSSPS---SSSPLPP--------PPPPPSFSSSSSSSFPFLLLL 222
P SP S+++ P SP+ S SP+PP P PP+ SSSSS
Sbjct: 1006 PCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSS--------- 1056
Query: 223 PLFFLLLLSSFSSSTFSSSSSSSFPALPLL 252
SS SSS+FSSSSSSS P+ P L
Sbjct: 1057 --------SSSSSSSFSSSSSSSSPSPPPL 1078
Score = 40.0 bits (92), Expect = 0.002
Identities = 32/76 (42%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 152 LLLPLFLLLPLFLPLFIPLFLLPSSSP---SSSSSPSYSSPSSSPSSSSPLPPPPPPPSF 208
+L P P +P PL S P SSSSS S SS S S SSSS P PPP +
Sbjct: 1022 ILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAI 1081
Query: 209 SSSSSSSFPFLLLLPL 224
SS SS LP+
Sbjct: 1082 SSVVSSGDNLEASLPM 1097
Score = 37.4 bits (85), Expect = 0.013
Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 21/100 (21%)
Query: 165 PLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLP-----------PPPPPPSFSSSSS 213
P +P LP+ S S+S P SP S+ ++ SPLP P PP S++S
Sbjct: 987 PPLLPTVPLPAPSSSASPHPC-PSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAAS 1045
Query: 214 SSFPFLLLLPLFFLLLLSSFSSSTFSSSSSSSFPALPLLP 253
P L SS SSS+ SS SSSS + P P
Sbjct: 1046 PGPP---------TLSSSSSSSSSSSSFSSSSSSSSPSPP 1076
Score = 31.6 bits (70), Expect = 0.71
Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 155 PLFLLLPLFLPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSS 214
PL +L P P P+ + ++S P S SSS SSSS SFSSSSSS
Sbjct: 1019 PLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSS--------SSFSSSSSS 1070
Query: 215 SFP 217
S P
Sbjct: 1071 SSP 1073
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 43.5 bits (101), Expect = 2e-04
Identities = 33/82 (40%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 178 PSSSSSPSYS-SPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSS 236
P P+ + SP S P +SS P PP +SSSSSSS ++ SSS
Sbjct: 344 PGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSS--------------AAASSSS 389
Query: 237 TFSSSSSSSFP---ALPLLPHT 255
+ SSSS+S FP ALP PH+
Sbjct: 390 SSSSSSASPFPASQALPSYPHS 411
Score = 36.6 bits (83), Expect = 0.022
Identities = 21/43 (48%), Positives = 25/43 (58%)
Query: 169 PLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSS 211
P P SS SSSS+ + SS SSS SS+SP P PS+ S
Sbjct: 369 PPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHS 411
Score = 32.3 bits (72), Expect = 0.42
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 165 PLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPP-----PPPPSFSSSS 212
P+ P SSS ++SSS S SS S+SP +S P PPP S S S+
Sbjct: 370 PMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSN 422
Score = 32.0 bits (71), Expect = 0.54
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 164 LPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPP 206
LP + F P+S S+ P Y+ PS + PPPPPP
Sbjct: 405 LPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPP 447
Score = 31.2 bits (69), Expect = 0.93
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSS-----SPLPPPPPPPSFSSSSSSS 215
SSS SSSS+ S P S PS S +P P PP P +SS++ S
Sbjct: 570 SSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLS 615
Score = 30.8 bits (68), Expect = 1.2
Identities = 20/44 (45%), Positives = 22/44 (50%)
Query: 174 PSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
P P SSSS S ++ SSS SSSS P P S SFP
Sbjct: 370 PMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFP 413
Score = 30.4 bits (67), Expect = 1.6
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 175 SSSPSSSSSPS------YSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLL 228
S P+SSS+P+ YSS SSS +++S S SSSS+S FP LP +
Sbjct: 358 SLPPASSSAPAPPMRFPYSSSSSSSAAASS------SSSSSSSSASPFPASQALPSYPHS 411
Query: 229 LLSSFSSSTFSSSSSSSFPALP 250
S S + + P+LP
Sbjct: 412 FPPPTSLSVSNQPPKYTQPSLP 433
Score = 28.1 bits (61), Expect = 7.9
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 183 SPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSSSS 242
SPS S P + LPPP S+S + + P S SS++ SS+S
Sbjct: 533 SPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPV-------------SSSSNSSSSTS 579
Query: 243 SSSFP 247
S+P
Sbjct: 580 QGSYP 584
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 43.5 bits (101), Expect = 2e-04
Identities = 33/82 (40%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 178 PSSSSSPSYS-SPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSS 236
P P+ + SP S P +SS P PP +SSSSSSS ++ SSS
Sbjct: 344 PGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSS--------------AAASSSS 389
Query: 237 TFSSSSSSSFP---ALPLLPHT 255
+ SSSS+S FP ALP PH+
Sbjct: 390 SSSSSSASPFPASQALPSYPHS 411
Score = 36.6 bits (83), Expect = 0.022
Identities = 21/43 (48%), Positives = 25/43 (58%)
Query: 169 PLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSS 211
P P SS SSSS+ + SS SSS SS+SP P PS+ S
Sbjct: 369 PPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHS 411
Score = 32.3 bits (72), Expect = 0.42
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 165 PLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPP-----PPPPSFSSSS 212
P+ P SSS ++SSS S SS S+SP +S P PPP S S S+
Sbjct: 370 PMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSN 422
Score = 32.0 bits (71), Expect = 0.54
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 164 LPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPP 206
LP + F P+S S+ P Y+ PS + PPPPPP
Sbjct: 405 LPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPP 447
Score = 31.2 bits (69), Expect = 0.93
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSS-----SPLPPPPPPPSFSSSSSSS 215
SSS SSSS+ S P S PS S +P P PP P +SS++ S
Sbjct: 570 SSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLS 615
Score = 30.8 bits (68), Expect = 1.2
Identities = 20/44 (45%), Positives = 22/44 (50%)
Query: 174 PSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
P P SSSS S ++ SSS SSSS P P S SFP
Sbjct: 370 PMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFP 413
Score = 30.4 bits (67), Expect = 1.6
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 175 SSSPSSSSSPS------YSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLL 228
S P+SSS+P+ YSS SSS +++S S SSSS+S FP LP +
Sbjct: 358 SLPPASSSAPAPPMRFPYSSSSSSSAAASS------SSSSSSSSASPFPASQALPSYPHS 411
Query: 229 LLSSFSSSTFSSSSSSSFPALP 250
S S + + P+LP
Sbjct: 412 FPPPTSLSVSNQPPKYTQPSLP 433
Score = 28.1 bits (61), Expect = 7.9
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 183 SPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSSSS 242
SPS S P + LPPP S+S + + P S SS++ SS+S
Sbjct: 533 SPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPV-------------SSSSNSSSSTS 579
Query: 243 SSSFP 247
S+P
Sbjct: 580 QGSYP 584
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 43.5 bits (101), Expect = 2e-04
Identities = 29/49 (59%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLP 223
SSS SSSSS S SS SSS SSSS PPP PP +SS P +L LP
Sbjct: 87 SSSSSSSSSSSSSSASSSSSSSSSSPPPASPP------ASSPPRVLELP 129
Score = 39.3 bits (90), Expect = 0.003
Identities = 23/36 (63%), Positives = 24/36 (66%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSS 210
SSS SSSSS S SS +SS SSSS PPP P SS
Sbjct: 86 SSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASS 121
Score = 32.3 bits (72), Expect = 0.42
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 172 LLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLS 231
+L +SSP + S+P P ++ P P + +SSSSSS S
Sbjct: 47 VLAASSPFFREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSS------------SS 94
Query: 232 SFSSSTFSSSSSSSFPALP 250
S SSS+ SSSSSSS + P
Sbjct: 95 SSSSSSASSSSSSSSSSPP 113
Score = 30.4 bits (67), Expect = 1.6
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 27/78 (34%)
Query: 173 LPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSS 232
LP ++ ++ +P+ ++ +SS SSSS SSSSSS SS
Sbjct: 67 LPPATGGAAPNPATTTAASSSSSSS-----------SSSSSS----------------SS 99
Query: 233 FSSSTFSSSSSSSFPALP 250
+SS+ SSSSSS PA P
Sbjct: 100 SASSSSSSSSSSPPPASP 117
Score = 29.6 bits (65), Expect = 2.7
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLP 223
SSS SSSS P S P+SSP L P P +FS + + L LP
Sbjct: 104 SSSSSSSSPPPASPPASSPPRVLEL-PGVPAAAFSDVLNFIYSARLALP 151
Score = 29.6 bits (65), Expect = 2.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 154 LPLFLLLPLFLPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPP 206
L L+ LLP+ P +P + SP+ ++P+ +SP P PPP P
Sbjct: 412 LKLYRLLPMRAAKR-PYKTYSQGAPEAPLSPTLNTPAPVAMPASPPPGPPPAP 463
Score = 29.6 bits (65), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 177 SPSSSSSPSYSSPSSSPSSSSPLPPPPPPPS 207
SP+ ++ + P+S P P P P PPPS
Sbjct: 440 SPTLNTPAPVAMPASPPPGPPPAPEPGPPPS 470
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 43.5 bits (101), Expect = 2e-04
Identities = 29/49 (59%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLP 223
SSS SSSSS S SS SSS SSSS PPP PP +SS P +L LP
Sbjct: 87 SSSSSSSSSSSSSSASSSSSSSSSSPPPASPP------ASSPPRVLELP 129
Score = 39.3 bits (90), Expect = 0.003
Identities = 23/36 (63%), Positives = 24/36 (66%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSS 210
SSS SSSSS S SS +SS SSSS PPP P SS
Sbjct: 86 SSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASS 121
Score = 32.3 bits (72), Expect = 0.42
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 172 LLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLS 231
+L +SSP + S+P P ++ P P + +SSSSSS S
Sbjct: 47 VLAASSPFFREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSS------------SS 94
Query: 232 SFSSSTFSSSSSSSFPALP 250
S SSS+ SSSSSSS + P
Sbjct: 95 SSSSSSASSSSSSSSSSPP 113
Score = 30.4 bits (67), Expect = 1.6
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 27/78 (34%)
Query: 173 LPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSS 232
LP ++ ++ +P+ ++ +SS SSSS SSSSSS SS
Sbjct: 67 LPPATGGAAPNPATTTAASSSSSSS-----------SSSSSS----------------SS 99
Query: 233 FSSSTFSSSSSSSFPALP 250
+SS+ SSSSSS PA P
Sbjct: 100 SASSSSSSSSSSPPPASP 117
Score = 29.6 bits (65), Expect = 2.7
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLP 223
SSS SSSS P S P+SSP L P P +FS + + L LP
Sbjct: 104 SSSSSSSSPPPASPPASSPPRVLEL-PGVPAAAFSDVLNFIYSARLALP 151
Score = 29.6 bits (65), Expect = 2.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 154 LPLFLLLPLFLPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPP 206
L L+ LLP+ P +P + SP+ ++P+ +SP P PPP P
Sbjct: 412 LKLYRLLPMRAAKR-PYKTYSQGAPEAPLSPTLNTPAPVAMPASPPPGPPPAP 463
Score = 29.6 bits (65), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 177 SPSSSSSPSYSSPSSSPSSSSPLPPPPPPPS 207
SP+ ++ + P+S P P P P PPPS
Sbjct: 440 SPTLNTPAPVAMPASPPPGPPPAPEPGPPPS 470
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 43.1 bits (100), Expect = 2e-04
Identities = 31/69 (44%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 167 FIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPL----PPPPPPPSFSSSSSSSFPFLLLL 222
F P +PSSS SSSSS S SS SSS SSSS P PP PP+F + F
Sbjct: 85 FKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAFGAPPPPLFDAAFPT 144
Query: 223 PLFFLLLLS 231
P + ++ LS
Sbjct: 145 PQWGIVDLS 153
Score = 37.4 bits (85), Expect = 0.013
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 167 FIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFF 226
F P+ L + + ++ P P P PP PPPP + S+F +P
Sbjct: 42 FEPMELYGEHAKAVAALPCAPGPPPQP------PPQPPPPQYDYPPQSTFKPKAEVPSSS 95
Query: 227 LLLLSSFSSSTFSSSSSSS 245
SS SSS+ SSSSSSS
Sbjct: 96 SSSSSSSSSSSSSSSSSSS 114
Score = 30.0 bits (66), Expect = 2.1
Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 26/73 (35%)
Query: 178 PSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSST 237
P S+ P PSSS SSSS SSSSSSS SS SSS+
Sbjct: 81 PQSTFKPKAEVPSSSSSSSS-----------SSSSSSS---------------SSSSSSS 114
Query: 238 FSSSSSSSFPALP 250
SS + P LP
Sbjct: 115 SSSQAKKPDPPLP 127
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 43.1 bits (100), Expect = 2e-04
Identities = 31/69 (44%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 167 FIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPL----PPPPPPPSFSSSSSSSFPFLLLL 222
F P +PSSS SSSSS S SS SSS SSSS P PP PP+F + F
Sbjct: 85 FKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAFGAPPPPLFDAAFPT 144
Query: 223 PLFFLLLLS 231
P + ++ LS
Sbjct: 145 PQWGIVDLS 153
Score = 37.4 bits (85), Expect = 0.013
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 167 FIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFF 226
F P+ L + + ++ P P P PP PPPP + S+F +P
Sbjct: 42 FEPMELYGEHAKAVAALPCAPGPPPQP------PPQPPPPQYDYPPQSTFKPKAEVPSSS 95
Query: 227 LLLLSSFSSSTFSSSSSSS 245
SS SSS+ SSSSSSS
Sbjct: 96 SSSSSSSSSSSSSSSSSSS 114
Score = 30.0 bits (66), Expect = 2.1
Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 26/73 (35%)
Query: 178 PSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSSST 237
P S+ P PSSS SSSS SSSSSSS SS SSS+
Sbjct: 81 PQSTFKPKAEVPSSSSSSSS-----------SSSSSSS---------------SSSSSSS 114
Query: 238 FSSSSSSSFPALP 250
SS + P LP
Sbjct: 115 SSSQAKKPDPPLP 127
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
sapiens]
Length = 1584
Score = 41.6 bits (96), Expect = 7e-04
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 173 LPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPP 206
LP+ SP S PS P + P+ P PPPPPPP
Sbjct: 1388 LPARSPPSRQPPSGGPPEAPPAQPPPPPPPPPPP 1421
Score = 37.4 bits (85), Expect = 0.013
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 168 IPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPP 206
I L P +S + S PS PS P + P PPPPPP
Sbjct: 1378 IHLSTAPEASLPARSPPSRQPPSGGPPEAPPAQPPPPPP 1416
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 41.6 bits (96), Expect = 7e-04
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 17/97 (17%)
Query: 17 TLGPGTGPGTEWA----------GNEGLLGTVGEKGTEALRGKR--KGEVEGQTGREGKV 64
+LGP PG A G++G++G +G G + +G++ G+ EG G G
Sbjct: 1289 SLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDR 1348
Query: 65 -----RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
RG++ GDP P Q G + ++ K G PG
Sbjct: 1349 GPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPG 1385
Score = 35.8 bits (81), Expect = 0.038
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 19 GPGTGPGTEW-AGNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGK--VRGEQSLHGDP 74
GP PG + AG +G G G+ G GKR V G G +G +GE L G
Sbjct: 1442 GPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQL 1501
Query: 75 RRPHQRGTEAVKWKDGGLRDPG 96
P +RGTE G +PG
Sbjct: 1502 GPPGKRGTEGRTGLPGNQGEPG 1523
Score = 33.5 bits (75), Expect = 0.19
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 19 GPGTGPG-TEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRP 77
GP PG T G EG G GEKG +G + G +G++ GE + GDP P
Sbjct: 1228 GPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAK--------GYQGQL-GEMGVPGDPGPP 1278
Query: 78 HQRGTEAVKWKDGGLRDPGQWTSEPE 103
G + + G PG+ ++ E
Sbjct: 1279 GTPGPKGSRGSLGPTGAPGRMGAQGE 1304
Score = 33.1 bits (74), Expect = 0.24
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 18 LGPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRP 77
LGP PG + G +GL+G+VGE G + +G++ V G +G G +G++ G P P
Sbjct: 828 LGPIGYPGPK--GMKGLMGSVGEPGLKGDKGEQ--GVPGVSGDPG-FQGDKGSQGLPGFP 882
Query: 78 HQRG 81
RG
Sbjct: 883 GARG 886
Score = 32.3 bits (72), Expect = 0.42
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 17/95 (17%)
Query: 18 LGPGTGPGTEWAGNEGLLGTVGEKGTEALRGK-----RKGEVE--------GQTGREGKV 64
+GP PG E G G G G G + ++G+ R G V G G G V
Sbjct: 951 MGPPGAPGLE--GQPGRKGFPGRPGLDGVKGEPGDPGRPGPVGEQGFMGFIGLVGEPGIV 1008
Query: 65 --RGEQSLHGDPRRPHQRGTEAVKWKDGGLRDPGQ 97
+G++ + G P P +G+ GG+ PG+
Sbjct: 1009 GEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGE 1043
Score = 32.3 bits (72), Expect = 0.42
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGK--RKGE--VEGQTGREGK--VRGEQSLHGD 73
PG G G G G G +G +RG R+G +G G +G ++G G
Sbjct: 1032 PGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGR 1091
Query: 74 PRRPHQRGTEAVKWKDGGLRDPG 96
P RP Q+G + G PG
Sbjct: 1092 PGRPGQQGVAGERGHLGSRGFPG 1114
Score = 32.3 bits (72), Expect = 0.42
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 18 LGPGTGPGTEWA----GNEGLLGTVGEKGTEALRGKR-----KGEVEGQTGREGKVRGEQ 68
LGP PG + G GL G G G + L+G R GE G+ G+EG + GE
Sbjct: 1170 LGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLKGDRGDPGPDGE-HGEKGQEG-LMGED 1227
Query: 69 SLHGDPRRPHQRGTEAVKWKDG 90
G P RG E K G
Sbjct: 1228 GPPGPPGVTGVRGPEGKSGKQG 1249
Score = 31.6 bits (70), Expect = 0.71
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGK--VRGEQSLHGDPRRP 77
PG G+ G LGT GE+G RG + +EG +G G ++G++ G
Sbjct: 1158 PGLPGEAGMKGDLGPLGTPGEQGLIGQRG--EPGLEGDSGPMGPDGLKGDRGDPGPDGEH 1215
Query: 78 HQRGTEAVKWKDGGLRDPG 96
++G E + +DG PG
Sbjct: 1216 GEKGQEGLMGEDGPPGPPG 1234
Score = 31.2 bits (69), Expect = 0.93
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 19 GPGTGPGTE-WAGNEGLLGTVGEKGTEALRG-----------KRKGEVEGQTGREGKVRG 66
GP PG + + G +GL G VG+ G + RG GE G G GK RG
Sbjct: 727 GPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGE-RGLPGVPGK-RG 784
Query: 67 EQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
+ + G P +RG + G L PG
Sbjct: 785 KMGMPGFPGVFGERGPPGLDGNPGELGLPG 814
Score = 30.4 bits (67), Expect = 1.6
Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 22/107 (20%)
Query: 165 PLFIPLFLLPSSSPSSSSSP------SYSSPSSSPSSSSPLPP-------------PPPP 205
P P P S+P+ S P + P SSP PL P P
Sbjct: 517 PRTAPAVPTPGSAPTGSKKPIGSEASKKAGPKSSPRKPVPLRPGKAARDVPLSDLTTRPS 576
Query: 206 PSFSSSSSSSFPFLLLLPLFFLLLL---SSFSSSTFSSSSSSSFPAL 249
P S + P L+L P FL +S S F + S+ FP L
Sbjct: 577 PRQPQPSQQTTPALVLAPAQFLSSSPRPTSSGYSIFHLAGSTPFPLL 623
Score = 30.4 bits (67), Expect = 1.6
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGK--RKGEVEGQTGREGK--VRGEQSLHGD-- 73
PG W G +G G G KG + G R+G V+G G G V G Q L G
Sbjct: 1384 PGHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRG-VQGLQGLPGPRGVVGRQGLEGIAG 1442
Query: 74 ----PRRPHQRGTEAVKWKDGGLRDPG 96
P R Q G + + DG DPG
Sbjct: 1443 PDGLPGRDGQAGQQGEQGDDG---DPG 1466
Score = 30.0 bits (66), Expect = 2.1
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 30 GNEGLLGTVGEKGTEALRG-KRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTEAVKWK 88
G+ G G G KG++ G K K G GR G V+G Q L G ++G E +
Sbjct: 1385 GHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRG-VQGLQGLPGPRGVVGRQGLEGIAGP 1443
Query: 89 DGGLRDPGQWTSEPEQ 104
DG GQ + EQ
Sbjct: 1444 DGLPGRDGQAGQQGEQ 1459
Score = 29.3 bits (64), Expect = 3.5
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPH 78
GP PG GN GL G G KG + G G + G +G + G L G+P P
Sbjct: 652 GPRGPPGPY--GNPGLPGPPGAKGQKGDPGLSPG--KAHDGAKGDM-GLPGLSGNPGPPG 706
Query: 79 QRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
++G + PG EQ +P P
Sbjct: 707 RKGHKGY---------PGPAGHPGEQGQPGP 728
Score = 28.5 bits (62), Expect = 6.0
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 178 PSSSSSPS-YSSPSSSPSSSSPLPPPPPPPS------FSSSSSSSFPFLLLLPLFFLLLL 230
P+S P+ S P+ P +P P PPPPS +SSS P L
Sbjct: 409 PTSRPVPARVSRPAEKPIQRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKITSHA 468
Query: 231 SSFSSSTFSSSSSSSFPALPLLP 253
S +S+ S+ F AL P
Sbjct: 469 SKPASARTSTHKPPPFTALSSSP 491
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 41.2 bits (95), Expect = 9e-04
Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 19 GPGTGPGTEWA----GNEGLLGTVGEKGTEALRGKR--KGEV--EGQTGREGKVRGEQSL 70
GP PG + G G G GE+G + L GK +GE+ +G GR G+ +GE L
Sbjct: 747 GPTGPPGKDGPNGPPGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGE-KGEAGL 805
Query: 71 HGDPRRPHQRGTEAVKWKDGGLRDPGQWTSEPEQTEPSP 109
G P P RG + + + G L PG E+ E P
Sbjct: 806 PGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGP 844
Score = 30.8 bits (68), Expect = 1.2
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 30 GNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRRPHQRGTEAVKWKD 89
G +G +G +G G +G+ KG+V +G+ +GE+ G P P + G++ ++ +
Sbjct: 496 GPKGDIGAIGPVGAPGPKGE-KGDVGIGPFGQGE-KGEKGSLGLPGPPGRDGSKGMRGEP 553
Query: 90 GGLRDPG 96
G L +PG
Sbjct: 554 GELGEPG 560
Score = 30.0 bits (66), Expect = 2.1
Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 19 GPGTGPGTEWA----------GNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGKVR-G 66
GP PG+ A G G G GE+G+ G R G G GK + G
Sbjct: 928 GPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDG 987
Query: 67 EQSLHGDPRRPHQRGTEAVKWKDGG 91
E L G P P GT+A K G
Sbjct: 988 EPGLRGSPGLPGPLGTKAACGKVRG 1012
Score = 29.6 bits (65), Expect = 2.7
Identities = 26/65 (40%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 19 GPGTGPGTEW-AGNEGLLGTVGEKGTEALRGKR-------KGEVEGQTGREGK--VRGEQ 68
GP PG G GL G GEKGT +G+R K GQ GR G V G Q
Sbjct: 572 GPPGLPGPPGRVGAPGLQGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQ 631
Query: 69 SLHGD 73
GD
Sbjct: 632 GEKGD 636
Score = 28.5 bits (62), Expect = 6.0
Identities = 31/82 (37%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGK--RKGEVEGQTGREGKVRGEQSLHGDPRRP 77
PG G G G+VG G GK +GE +G G EG G GDP P
Sbjct: 918 PGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGE-KGAAGEEGS-PGPVGPRGDPGAP 975
Query: 78 HQRGTEAVKWKDG--GLR-DPG 96
G K KDG GLR PG
Sbjct: 976 GLPGPPG-KGKDGEPGLRGSPG 996
>gi|239756825 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 40.8 bits (94), Expect = 0.001
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFS 234
S + S+S++ S S S++ SSS P P PSFS S+S SF LL+L L SF+
Sbjct: 61 SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLS-----LAGSFT 115
Query: 235 SS 236
SS
Sbjct: 116 SS 117
>gi|239751326 PREDICTED: hypothetical protein XP_002347792 [Homo
sapiens]
Length = 117
Score = 40.8 bits (94), Expect = 0.001
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFS 234
S + S+S++ S S S++ SSS P P PSFS S+S SF LL+L L SF+
Sbjct: 61 SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLS-----LAGSFT 115
Query: 235 SS 236
SS
Sbjct: 116 SS 117
>gi|239745825 PREDICTED: hypothetical protein XP_002343558 [Homo
sapiens]
Length = 117
Score = 40.8 bits (94), Expect = 0.001
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFS 234
S + S+S++ S S S++ SSS P P PSFS S+S SF LL+L L SF+
Sbjct: 61 SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLS-----LAGSFT 115
Query: 235 SS 236
SS
Sbjct: 116 SS 117
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 40.8 bits (94), Expect = 0.001
Identities = 24/43 (55%), Positives = 26/43 (60%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
SSS SSSSS S SS SSS SSSSP P P P + +S P
Sbjct: 2626 SSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKP 2668
Score = 39.7 bits (91), Expect = 0.003
Identities = 27/43 (62%), Positives = 27/43 (62%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
SSS SSSSS S SS SSS SSSS S SSSSSSS P
Sbjct: 2607 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSP 2649
Score = 38.9 bits (89), Expect = 0.004
Identities = 43/111 (38%), Positives = 44/111 (39%), Gaps = 35/111 (31%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLP-------------------------PPPPPP--- 206
SSS SSSSS S S SSS S S LP PP P P
Sbjct: 2544 SSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKR 2603
Query: 207 -------SFSSSSSSSFPFLLLLPLFFLLLLSSFSSSTFSSSSSSSFPALP 250
S SSSSSSS SS SSS+ SSSSSS PA P
Sbjct: 2604 KRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKP 2654
Score = 38.5 bits (88), Expect = 0.006
Identities = 37/78 (47%), Positives = 39/78 (50%), Gaps = 24/78 (30%)
Query: 176 SSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFSS 235
SS SSSSS S SS SSS SSSS S SSSSSSS SS SS
Sbjct: 2607 SSSSSSSSSSSSSSSSSSSSSS---------SSSSSSSSS---------------SSSSS 2642
Query: 236 STFSSSSSSSFPALPLLP 253
S+ SSS S + P LP
Sbjct: 2643 SSSSSSPSPAKPGPQALP 2660
Score = 33.1 bits (74), Expect = 0.24
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 15/72 (20%)
Query: 174 PSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSF 233
P S P S+ + PS+ + L P S SSSSSSS SS
Sbjct: 2499 PGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSS---------------SSS 2543
Query: 234 SSSTFSSSSSSS 245
SSS+ SSSSSSS
Sbjct: 2544 SSSSSSSSSSSS 2555
Score = 32.7 bits (73), Expect = 0.32
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 169 PLFLLPSSSPSSSSSPSYSSPSSSP-----SSSSPLPPPPPPPSFSSSSSSSFP 217
PL P + PS +S SP SP SSSS PP P P+ S +SS P
Sbjct: 385 PLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSP 438
Score = 32.7 bits (73), Expect = 0.32
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPP 203
SSS SSS SP+ P + P +SP PPP
Sbjct: 2642 SSSSSSSPSPAKPGPQALPKPASPKKPPP 2670
Score = 32.3 bits (72), Expect = 0.42
Identities = 22/46 (47%), Positives = 23/46 (50%)
Query: 172 LLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
L P+ SSSS S SS SSS SSSS S S S SS P
Sbjct: 2524 LQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLP 2569
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 173 LPSSSPSSSSSPSYSSP------SSSPSSSSPLPPPPPPPSFSSSSSS 214
LP SS S SS PS SSSP S P P P SSS +S
Sbjct: 412 LPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTS 459
Score = 29.3 bits (64), Expect = 3.5
Identities = 18/41 (43%), Positives = 19/41 (46%)
Query: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
SSS SS SP + S SSS P P P P SSS
Sbjct: 416 SSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSS 456
Score = 29.3 bits (64), Expect = 3.5
Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 25/80 (31%)
Query: 174 PSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSF 233
PS+ + + S SSS SSSS SSSSSSS SS
Sbjct: 2518 PSALAALQPAKERRSSSSSSSSSSS----------SSSSSSS---------------SSS 2552
Query: 234 SSSTFSSSSSSSFPALPLLP 253
SSS+ SSSS S +LP+ P
Sbjct: 2553 SSSSGSSSSDSEGSSLPVQP 2572
Score = 29.3 bits (64), Expect = 3.5
Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 26/78 (33%)
Query: 173 LPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSS 232
L + P+ S SS SSS SSSS SSSSSSS SS
Sbjct: 2521 LAALQPAKERRSSSSSSSSSSSSSS-----------SSSSSSS---------------SS 2554
Query: 233 FSSSTFSSSSSSSFPALP 250
S S+ S S SS P P
Sbjct: 2555 SSGSSSSDSEGSSLPVQP 2572
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 40.4 bits (93), Expect = 0.002
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE----VEGQTGREGKVRGEQSLHGDP 74
GP PG G G GEKG RG G ++G+ GR+G+ +GE + G P
Sbjct: 505 GPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGE-KGEPADPGPP 563
Query: 75 RRPHQRGTEAVKWKDGGLRDPG 96
P RG V +G PG
Sbjct: 564 GEPGPRGPRGVPGPEGEPGPPG 585
Score = 38.9 bits (89), Expect = 0.004
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRR-- 76
GP PG + G +G G G KG L GK +GQ G+ G++ G GDP
Sbjct: 298 GPKGVPG--FKGEKGEFGADGRKGAPGLAGKNG--TDGQKGKLGRI-GPPGCKGDPGNRG 352
Query: 77 ----PHQRGTEAVKWKDGGLRDPGQ 97
P + G+ + GG DPG+
Sbjct: 353 PDGYPGEAGSPGERGDQGGKGDPGR 377
Score = 36.6 bits (83), Expect = 0.022
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGKVRGEQSLHGDPRRPH 78
PG G +G LG +G G + G R + G+ G G+ RG+Q GDP RP
Sbjct: 321 PGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGE-RGDQGGKGDPGRPG 379
Query: 79 QRG 81
+RG
Sbjct: 380 RRG 382
Score = 30.0 bits (66), Expect = 2.1
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 30 GNEGLLGTVGEKGTEALRGKR-KGEVEGQTGREG-KVRGEQSLHGDPRRPHQRGTEAVKW 87
G G G+ G+ G RG + +G GR G G + G+ P RG E +
Sbjct: 481 GEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRG 540
Query: 88 KDGGLRDPGQWTSEPEQTEPSP 109
G +PG+ + E +P P
Sbjct: 541 DFGLKGEPGRKGEKGEPADPGP 562
Score = 29.3 bits (64), Expect = 3.5
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKR--------------KGEVEGQTGREGKVR 65
PG + G +G G +GE G +G++ KG V G G +G+
Sbjct: 255 PGPSGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPKG-VPGFKGEKGEF- 312
Query: 66 GEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
G G P + GT+ K K G + PG
Sbjct: 313 GADGRKGAPGLAGKNGTDGQKGKLGRIGPPG 343
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 40.4 bits (93), Expect = 0.002
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE----VEGQTGREGKVRGEQSLHGDP 74
GP PG G G GEKG RG G ++G+ GR+G+ +GE + G P
Sbjct: 505 GPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGE-KGEPADPGPP 563
Query: 75 RRPHQRGTEAVKWKDGGLRDPG 96
P RG V +G PG
Sbjct: 564 GEPGPRGPRGVPGPEGEPGPPG 585
Score = 38.9 bits (89), Expect = 0.004
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRR-- 76
GP PG + G +G G G KG L GK +GQ G+ G++ G GDP
Sbjct: 298 GPKGVPG--FKGEKGEFGADGRKGAPGLAGKNG--TDGQKGKLGRI-GPPGCKGDPGNRG 352
Query: 77 ----PHQRGTEAVKWKDGGLRDPGQ 97
P + G+ + GG DPG+
Sbjct: 353 PDGYPGEAGSPGERGDQGGKGDPGR 377
Score = 36.6 bits (83), Expect = 0.022
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGKVRGEQSLHGDPRRPH 78
PG G +G LG +G G + G R + G+ G G+ RG+Q GDP RP
Sbjct: 321 PGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGE-RGDQGGKGDPGRPG 379
Query: 79 QRG 81
+RG
Sbjct: 380 RRG 382
Score = 30.0 bits (66), Expect = 2.1
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 30 GNEGLLGTVGEKGTEALRGKR-KGEVEGQTGREG-KVRGEQSLHGDPRRPHQRGTEAVKW 87
G G G+ G+ G RG + +G GR G G + G+ P RG E +
Sbjct: 481 GEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRG 540
Query: 88 KDGGLRDPGQWTSEPEQTEPSP 109
G +PG+ + E +P P
Sbjct: 541 DFGLKGEPGRKGEKGEPADPGP 562
Score = 29.3 bits (64), Expect = 3.5
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKR--------------KGEVEGQTGREGKVR 65
PG + G +G G +GE G +G++ KG V G G +G+
Sbjct: 255 PGPSGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPKG-VPGFKGEKGEF- 312
Query: 66 GEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
G G P + GT+ K K G + PG
Sbjct: 313 GADGRKGAPGLAGKNGTDGQKGKLGRIGPPG 343
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 40.4 bits (93), Expect = 0.002
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE----VEGQTGREGKVRGEQSLHGDP 74
GP PG G G GEKG RG G ++G+ GR+G+ +GE + G P
Sbjct: 505 GPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGE-KGEPADPGPP 563
Query: 75 RRPHQRGTEAVKWKDGGLRDPG 96
P RG V +G PG
Sbjct: 564 GEPGPRGPRGVPGPEGEPGPPG 585
Score = 38.9 bits (89), Expect = 0.004
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 19 GPGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGEVEGQTGREGKVRGEQSLHGDPRR-- 76
GP PG + G +G G G KG L GK +GQ G+ G++ G GDP
Sbjct: 298 GPKGVPG--FKGEKGEFGADGRKGAPGLAGKNG--TDGQKGKLGRI-GPPGCKGDPGNRG 352
Query: 77 ----PHQRGTEAVKWKDGGLRDPGQ 97
P + G+ + GG DPG+
Sbjct: 353 PDGYPGEAGSPGERGDQGGKGDPGR 377
Score = 36.6 bits (83), Expect = 0.022
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKRKGE-VEGQTGREGKVRGEQSLHGDPRRPH 78
PG G +G LG +G G + G R + G+ G G+ RG+Q GDP RP
Sbjct: 321 PGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGE-RGDQGGKGDPGRPG 379
Query: 79 QRG 81
+RG
Sbjct: 380 RRG 382
Score = 30.0 bits (66), Expect = 2.1
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 30 GNEGLLGTVGEKGTEALRGKR-KGEVEGQTGREG-KVRGEQSLHGDPRRPHQRGTEAVKW 87
G G G+ G+ G RG + +G GR G G + G+ P RG E +
Sbjct: 481 GEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRG 540
Query: 88 KDGGLRDPGQWTSEPEQTEPSP 109
G +PG+ + E +P P
Sbjct: 541 DFGLKGEPGRKGEKGEPADPGP 562
Score = 29.3 bits (64), Expect = 3.5
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 20 PGTGPGTEWAGNEGLLGTVGEKGTEALRGKR--------------KGEVEGQTGREGKVR 65
PG + G +G G +GE G +G++ KG V G G +G+
Sbjct: 255 PGPSGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPKG-VPGFKGEKGEF- 312
Query: 66 GEQSLHGDPRRPHQRGTEAVKWKDGGLRDPG 96
G G P + GT+ K K G + PG
Sbjct: 313 GADGRKGAPGLAGKNGTDGQKGKLGRIGPPG 343
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 169 PLFLLPSSSPSSSSSPSYSSP----SSSPSSSSPLPPPPPPP 206
P LPS SPS SS P+ P SS S+ P PPPPPPP
Sbjct: 2372 PASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPP 2413
Score = 29.3 bits (64), Expect = 3.5
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 177 SPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
SP+ S+ + P S S PL PP PS S P
Sbjct: 545 SPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAKQPPSQGLP 585
Score = 28.1 bits (61), Expect = 7.9
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 176 SSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
SS S +S P+S+ SSS P P P PS S S
Sbjct: 4641 SSVVEKGSHVHSGPTSAGSSSVPSPGQPGSPSVSKKKHGS 4680
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 169 PLFLLPSSSPSSSSSPSYSSP----SSSPSSSSPLPPPPPPP 206
P LPS SPS SS P+ P SS S+ P PPPPPPP
Sbjct: 2372 PASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPPPPPPPPP 2413
Score = 29.3 bits (64), Expect = 3.5
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 177 SPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFP 217
SP+ S+ + P S S PL PP PS S P
Sbjct: 545 SPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAKQPPSQGLP 585
Score = 28.1 bits (61), Expect = 7.9
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 176 SSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSS 215
SS S +S P+S+ SSS P P P PS S S
Sbjct: 4641 SSVVEKGSHVHSGPTSAGSSSVPSPGQPGSPSVSKKKHGS 4680
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 40.0 bits (92), Expect = 0.002
Identities = 32/85 (37%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 172 LLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPF-LLLLPLFFLLLL 230
+ P +SP SPS SP SS SS+P P P P SSS+ FP L P L
Sbjct: 828 IFPITSPPCHPSPSPFSPISSQVSSNPSPHPTSSPLPFSSSTPEFPVPLSQCPWSSLPTT 887
Query: 231 SSFSSSTFSSSSSSSFPALPLLPHT 255
S + S S + S P P P T
Sbjct: 888 SPPTFSPTCSQVTLSSPFFPPCPST 912
Score = 40.0 bits (92), Expect = 0.002
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 168 IPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFL 227
+PL P SS ++S P++S S + SSP PP P S+SSFP PL L
Sbjct: 874 VPLSQCPWSSLPTTSPPTFSPTCSQVTLSSPFFPPCP-------STSSFPSTTAAPLLSL 926
Query: 228 LLLSSFSSSTFSSSSSSSFPAL 249
S + T + S S P L
Sbjct: 927 ASAFSLAVMTVAQSLLSPSPGL 948
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,813,352
Number of Sequences: 37866
Number of extensions: 909939
Number of successful extensions: 34223
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 579
Number of HSP's that attempted gapping in prelim test: 17269
Number of HSP's gapped (non-prelim): 11945
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.