Search of human proteins with 116734698

Search of human proteins with 116734698

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116734698 RNA binding motif protein 23 isoform 3 [Homo
sapiens]
         (405 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]    799   0.0  
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]    788   0.0  
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]    776   0.0  
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]      437   e-122
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]     434   e-122
gi|209862867 poly-U binding splicing factor 60KDa isoform c [Hom...    95   1e-19
gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo...    95   1e-19
gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo...    92   6e-19
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s...    82   7e-16
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s...    80   3e-15
gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s...    80   3e-15
gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa...    80   3e-15
gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s...    79   1e-14
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho...    79   1e-14
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo...    79   1e-14
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho...    79   1e-14
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]              77   2e-14
gi|188219593 TIA1 protein isoform 1 [Homo sapiens]                     77   2e-14
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]                77   3e-14
gi|20373175 musashi 2 isoform a [Homo sapiens]                         77   4e-14
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]      76   5e-14
gi|188219591 TIA1 protein isoform 2 [Homo sapiens]                     76   6e-14
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo...    75   8e-14
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]      75   8e-14
gi|25121993 musashi 2 isoform b [Homo sapiens]                         75   1e-13
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ...    75   1e-13
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ...    75   1e-13
gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]             73   4e-13
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]     73   4e-13
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor...    73   4e-13

>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
          Length = 405

 Score =  799 bits (2064), Expect = 0.0
 Identities = 405/405 (100%), Positives = 405/405 (100%)

Query: 1   MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSN 60
           MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSN
Sbjct: 1   MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSN 60

Query: 61  RSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATGEP 120
           RSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATGEP
Sbjct: 61  RSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATGEP 120

Query: 121 VDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 180
           VDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF
Sbjct: 121 VDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 180

Query: 181 CEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNI 240
           CEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNI
Sbjct: 181 CEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNI 240

Query: 241 TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 300
           TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM
Sbjct: 241 TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 300

Query: 301 RVGHVTERLDGGTDITFPDGDQELDLGSAGGRFQLMAKLAEGAGIQLPSTAAAAAAAAAQ 360
           RVGHVTERLDGGTDITFPDGDQELDLGSAGGRFQLMAKLAEGAGIQLPSTAAAAAAAAAQ
Sbjct: 301 RVGHVTERLDGGTDITFPDGDQELDLGSAGGRFQLMAKLAEGAGIQLPSTAAAAAAAAAQ 360

Query: 361 AAALQLNGAVPLGALNPAALTALSPALNLASQCFQLSSLFTPQTM 405
           AAALQLNGAVPLGALNPAALTALSPALNLASQCFQLSSLFTPQTM
Sbjct: 361 AAALQLNGAVPLGALNPAALTALSPALNLASQCFQLSSLFTPQTM 405


>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
          Length = 423

 Score =  788 bits (2035), Expect = 0.0
 Identities = 405/423 (95%), Positives = 405/423 (95%), Gaps = 18/423 (4%)

Query: 1   MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSN 60
           MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSN
Sbjct: 1   MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSN 60

Query: 61  RSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATG-- 118
           RSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATG  
Sbjct: 61  RSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATGYR 120

Query: 119 ----------------EPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVR 162
                           EPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVR
Sbjct: 121 YGHSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVR 180

Query: 163 IISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQ 222
           IISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQ
Sbjct: 181 IISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQ 240

Query: 223 KGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSEC 282
           KGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSEC
Sbjct: 241 KGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSEC 300

Query: 283 ARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQELDLGSAGGRFQLMAKLAEG 342
           ARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQELDLGSAGGRFQLMAKLAEG
Sbjct: 301 ARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQELDLGSAGGRFQLMAKLAEG 360

Query: 343 AGIQLPSTAAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPALNLASQCFQLSSLFTP 402
           AGIQLPSTAAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPALNLASQCFQLSSLFTP
Sbjct: 361 AGIQLPSTAAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPALNLASQCFQLSSLFTP 420

Query: 403 QTM 405
           QTM
Sbjct: 421 QTM 423


>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
          Length = 439

 Score =  776 bits (2003), Expect = 0.0
 Identities = 404/439 (92%), Positives = 405/439 (92%), Gaps = 34/439 (7%)

Query: 1   MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETS- 59
           MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETS 
Sbjct: 1   MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSK 60

Query: 60  ---------------NRSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRR 104
                          +RSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRR
Sbjct: 61  KKRSRSHNKSRDRKRSRSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRR 120

Query: 105 EDRVHYRSPPLATG------------------EPVDNLSPEERDARTVFCMQLAARIRPR 146
           EDRVHYRSPPLATG                  EPVDNLSPEERDARTVFCMQLAARIRPR
Sbjct: 121 EDRVHYRSPPLATGYRYGHSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPR 180

Query: 147 DLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 206
           DLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA
Sbjct: 181 DLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 240

Query: 207 SQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDT 266
           SQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDT
Sbjct: 241 SQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDT 300

Query: 267 GRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQELDL 326
           GRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQELDL
Sbjct: 301 GRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQELDL 360

Query: 327 GSAGGRFQLMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPA 386
           GSAGGRFQLMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPA
Sbjct: 361 GSAGGRFQLMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPA 420

Query: 387 LNLASQCFQLSSLFTPQTM 405
           LNLASQCFQLSSLFTPQTM
Sbjct: 421 LNLASQCFQLSSLFTPQTM 439


>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
          Length = 524

 Score =  437 bits (1123), Expect = e-122
 Identities = 253/439 (57%), Positives = 297/439 (67%), Gaps = 53/439 (12%)

Query: 7   DIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSNRSRDRD 66
           DI IEAMLEAPYKK+E++       ++       S S S +     S   E   RSRDR+
Sbjct: 4   DIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERK-RSRDRE 62

Query: 67  RYR---RRNSRSRSPGRQCRHRSRSWDRRHGSESRS-----------------------R 100
           R +   R   RSRS  R+ R RSRS DRR     RS                        
Sbjct: 63  RKKSKSRERKRSRSKERR-RSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLS 121

Query: 101 DHRREDRVHYRSPPLATGEPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRD 160
             R   +  +R       EP+DNL+PEERDARTVFCMQLAARIRPRDLE+FFS VGKVRD
Sbjct: 122 RRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRD 181

Query: 161 VRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANN 220
           VR+ISDRNSRRSKGIAYVEF ++ SVPLAIGLTGQR+LGVPIIVQASQAEKNR AAMANN
Sbjct: 182 VRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANN 241

Query: 221 LQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDS 280
           LQKG+ GPMRLYVGSLHFNITEDMLRGIFEPFG+I++I LM DS+TGRSKGYGFITFSDS
Sbjct: 242 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 301

Query: 281 ECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQ----ELDLGSAGGRFQLM 336
           ECA++ALEQLNGFELAGRPM+VGHVTER D  +  +F D D+     +DLG+  GR QLM
Sbjct: 302 ECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTT-GRLQLM 360

Query: 337 AKLAEGAGIQLPSTAAAAAAAAAQAAALQLNGAVPLGAL-----------NPAALTALSP 385
           A+LAEG G+Q+P  A           ALQ++G++  GA+             +AL A + 
Sbjct: 361 ARLAEGTGLQIPPAA---------QQALQMSGSLAFGAVADLQTRLSQQTEASALAAAAS 411

Query: 386 ALNLASQCFQLSSLFTPQT 404
              LA+QCFQLS++F PQT
Sbjct: 412 VQPLATQCFQLSNMFNPQT 430


>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
          Length = 530

 Score =  434 bits (1117), Expect = e-122
 Identities = 253/445 (56%), Positives = 297/445 (66%), Gaps = 59/445 (13%)

Query: 7   DIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSNRSRDRD 66
           DI IEAMLEAPYKK+E++       ++       S S S +     S   E   RSRDR+
Sbjct: 4   DIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERK-RSRDRE 62

Query: 67  RYR---RRNSRSRSPGRQCRHRSRSWDRRHGSESRS-----------------------R 100
           R +   R   RSRS  R+ R RSRS DRR     RS                        
Sbjct: 63  RKKSKSRERKRSRSKERR-RSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLS 121

Query: 101 DHRREDRVHYRSPPLATGEPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRD 160
             R   +  +R       EP+DNL+PEERDARTVFCMQLAARIRPRDLE+FFS VGKVRD
Sbjct: 122 RRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRD 181

Query: 161 VRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANN 220
           VR+ISDRNSRRSKGIAYVEF ++ SVPLAIGLTGQR+LGVPIIVQASQAEKNR AAMANN
Sbjct: 182 VRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANN 241

Query: 221 LQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDS 280
           LQKG+ GPMRLYVGSLHFNITEDMLRGIFEPFG+I++I LM DS+TGRSKGYGFITFSDS
Sbjct: 242 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 301

Query: 281 ECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQ----ELDLGSAGGRFQLM 336
           ECA++ALEQLNGFELAGRPM+VGHVTER D  +  +F D D+     +DLG+  GR QLM
Sbjct: 302 ECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTT-GRLQLM 360

Query: 337 AKLAEGAGIQLPSTAAAAAAAAAQAAALQLNGAVPLGAL-----------------NPAA 379
           A+LAEG G+Q+P  A           ALQ++G++  GA+                   +A
Sbjct: 361 ARLAEGTGLQIPPAA---------QQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASA 411

Query: 380 LTALSPALNLASQCFQLSSLFTPQT 404
           L A +    LA+QCFQLS++F PQT
Sbjct: 412 LAAAASVQPLATQCFQLSNMFNPQT 436


>gi|209862867 poly-U binding splicing factor 60KDa isoform c [Homo
           sapiens]
          Length = 516

 Score = 94.7 bits (234), Expect = 1e-19
 Identities = 76/277 (27%), Positives = 126/277 (45%), Gaps = 34/277 (12%)

Query: 120 PVDNLSPEERDARTVFCMQLAARIRPRDLEDF----FSAVGKVRDVRIISDRNSRRSKGI 175
           P+ +++ + + A  + C      I     ED     F+  G ++ + +  D  + + KG 
Sbjct: 70  PLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGF 129

Query: 176 AYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGS 235
           A+VE+   ++  LA+      +LG   I     +   +   + + L +      R+YV S
Sbjct: 130 AFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVAS 189

Query: 236 LHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL 295
           +H ++++D ++ +FE FGKI +  L +D  TG+ KGYGFI +  ++ ++ A+  +N F+L
Sbjct: 190 VHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDL 249

Query: 296 AGRPMRVGHVTERLDGGTDITFPDGDQELDLGSAGGRFQLMAKLAEGAGIQLPSTAAAAA 355
            G+ +RVG           +T P                 M  L       LP  AA AA
Sbjct: 250 GGQYLRVGKA---------VTPP-----------------MPLLTPATPGGLPPAAAVAA 283

Query: 356 AAAAQAAALQ--LNGAVPLGALNPAALTALSPALNLA 390
           AAA      Q  + GA  LG L    L  +SPAL LA
Sbjct: 284 AAATAKITAQEAVAGAAVLGTLGTPGL--VSPALTLA 318


>gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo
           sapiens]
          Length = 559

 Score = 94.7 bits (234), Expect = 1e-19
 Identities = 76/277 (27%), Positives = 126/277 (45%), Gaps = 34/277 (12%)

Query: 120 PVDNLSPEERDARTVFCMQLAARIRPRDLEDF----FSAVGKVRDVRIISDRNSRRSKGI 175
           P+ +++ + + A  + C      I     ED     F+  G ++ + +  D  + + KG 
Sbjct: 113 PLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGF 172

Query: 176 AYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGS 235
           A+VE+   ++  LA+      +LG   I     +   +   + + L +      R+YV S
Sbjct: 173 AFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVAS 232

Query: 236 LHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL 295
           +H ++++D ++ +FE FGKI +  L +D  TG+ KGYGFI +  ++ ++ A+  +N F+L
Sbjct: 233 VHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDL 292

Query: 296 AGRPMRVGHVTERLDGGTDITFPDGDQELDLGSAGGRFQLMAKLAEGAGIQLPSTAAAAA 355
            G+ +RVG           +T P                 M  L       LP  AA AA
Sbjct: 293 GGQYLRVGKA---------VTPP-----------------MPLLTPATPGGLPPAAAVAA 326

Query: 356 AAAAQAAALQ--LNGAVPLGALNPAALTALSPALNLA 390
           AAA      Q  + GA  LG L    L  +SPAL LA
Sbjct: 327 AAATAKITAQEAVAGAAVLGTLGTPGL--VSPALTLA 361


>gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo
           sapiens]
          Length = 542

 Score = 92.4 bits (228), Expect = 6e-19
 Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 30/241 (12%)

Query: 152 FSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEK 211
           F+  G ++ + +  D  + + KG A+VE+   ++  LA+      +LG   I     +  
Sbjct: 132 FAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI 191

Query: 212 NRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKG 271
            +   + + L +      R+YV S+H ++++D ++ +FE FGKI +  L +D  TG+ KG
Sbjct: 192 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKG 251

Query: 272 YGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQELDLGSAGG 331
           YGFI +  ++ ++ A+  +N F+L G+ +RVG           +T P             
Sbjct: 252 YGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA---------VTPP------------- 289

Query: 332 RFQLMAKLAEGAGIQLPSTAAAAAAAAAQAAALQ--LNGAVPLGALNPAALTALSPALNL 389
               M  L       LP  AA AAAAA      Q  + GA  LG L    L  +SPAL L
Sbjct: 290 ----MPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGL--VSPALTL 343

Query: 390 A 390
           A
Sbjct: 344 A 344



 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 37/98 (37%), Positives = 56/98 (57%)

Query: 206 ASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSD 265
           A Q ++     MA   Q+      R+YVGS+++ + ED +R  F PFG I +I +  DS 
Sbjct: 89  AHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 148

Query: 266 TGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 303
           T + KG+ F+ +   E A+ ALEQ+N   L GR ++VG
Sbjct: 149 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 186



 Score = 35.0 bits (79), Expect = 0.12
 Identities = 15/65 (23%), Positives = 32/65 (49%)

Query: 121 VDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 180
           +D L+ E R    ++   +   +   D++  F A GK++   +  D  + + KG  ++E+
Sbjct: 198 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 257

Query: 181 CEIQS 185
            + QS
Sbjct: 258 EKAQS 262


>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
           sapiens]
          Length = 370

 Score = 82.4 bits (202), Expect = 7e-16
 Identities = 51/178 (28%), Positives = 99/178 (55%), Gaps = 8/178 (4%)

Query: 134 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-L 192
           VF   L   I  + L + FSA GK+   +++SD   + SKG A+V F    +   AI  +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEM 157

Query: 193 TGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPF 252
            G+ L G  + V   +  K+R A + +   +       +Y+ +   ++ ++ L+ +F  +
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN----VYIKNFGGDMDDERLKDVFSKY 213

Query: 253 GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 310
           GK  ++ +M DS +G+SKG+GF++F   E A++A+E++NG ++ G+ + VG   ++++
Sbjct: 214 GKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVE 270



 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 12/163 (7%)

Query: 148 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQA 206
           L+D FS  GK   V++++D +S +SKG  +V F   ++   A+  + G+ + G  I V  
Sbjct: 206 LKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGR 264

Query: 207 SQAEKNRLAAMANNLQ-------KGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIV 259
           +Q +  R A +    +       +G  G ++LY+ +L   I ++ LR  F  FG I  + 
Sbjct: 265 AQKKVERQAELKQMFEQLKRERIRGCQG-VKLYIKNLDDTIDDEKLRNEFSSFGSISRVK 323

Query: 260 LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 302
           +M++   G+SKG+G I FS  E A +A+ ++NG  L  +P+ +
Sbjct: 324 VMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSI 364



 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 11/159 (6%)

Query: 152 FSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEK 211
           FS VG V  +RI  D+ +RRS G AYV F ++     A+      ++         + + 
Sbjct: 30  FSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDII---------KGKS 80

Query: 212 NRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKG 271
            RL     +      G   +++ +L  +I    L   F  FGKI +  +M D D G SKG
Sbjct: 81  IRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKG 138

Query: 272 YGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 310
           Y F+ F +   A RA+E++NG  L G  + VG    R D
Sbjct: 139 YAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKD 177



 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 26/72 (36%), Positives = 43/72 (59%)

Query: 231 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 290
           LYVG LH ++TED+L   F   G + +I + +D  T RS GY ++ F     A++AL+ +
Sbjct: 12  LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71

Query: 291 NGFELAGRPMRV 302
           N   + G+ +R+
Sbjct: 72  NFDIIKGKSIRL 83


>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
           sapiens]
          Length = 448

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 78/299 (26%), Positives = 128/299 (42%), Gaps = 74/299 (24%)

Query: 127 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 186
           ++ DA  +F  Q+   +  +DL+  F   GK+ ++ ++ DR +   KG A++ +CE +S 
Sbjct: 49  KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESA 108

Query: 187 PLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQ------KGNGGPMRLYVGSLHFNI 240
             A               Q++  E+  L  M   +Q      +  G   +L+VG L+   
Sbjct: 109 LKA---------------QSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQ 153

Query: 241 TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 300
           +ED +R +FE FG I+   +++  D G SKG  F+ +S    A+ A+  L+G        
Sbjct: 154 SEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINALHG-------- 204

Query: 301 RVGHVTERLDGGTD---ITFPDGDQE--------------------LDLGSAGGRFQ--- 334
                ++ + G +    + F D D+E                    +  G+ G   Q   
Sbjct: 205 -----SQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALM 259

Query: 335 -----LMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNG--AVPL----GALNPAALTA 382
                LMA +A+G    L   AA AAA   Q AAL +NG  A P+    G   P  +TA
Sbjct: 260 QQQAALMASVAQGG--YLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITA 316


>gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo
           sapiens]
          Length = 485

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 77/294 (26%), Positives = 131/294 (44%), Gaps = 55/294 (18%)

Query: 127 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 186
           ++ DA  +F  Q+   +  +DL+  F   GK+ ++ ++ DR +   KG A++ +CE +S 
Sbjct: 49  KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESA 108

Query: 187 PLAIGLTGQR--LLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDM 244
             A     ++  L G+   +Q   A+       ++ L++      +L+VG L+   +ED 
Sbjct: 109 LKAQSALHEQKTLPGMNRPIQVKPADSESRGG-SSCLRQPPSQDRKLFVGMLNKQQSEDD 167

Query: 245 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 304
           +R +FE FG I+   +++  D G SKG  F+ +S    A+ A+  L+G            
Sbjct: 168 VRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINALHG------------ 214

Query: 305 VTERLDGGTD---ITFPDGDQE--------------------LDLGSAGGRFQ------- 334
            ++ + G +    + F D D+E                    +  G+ G   Q       
Sbjct: 215 -SQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQAMQQQAA 273

Query: 335 LMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNG--AVPL----GALNPAALTA 382
           LMA +A+G    L   AA AAA   Q AAL +NG  A P+    G   P  +TA
Sbjct: 274 LMASVAQGG--YLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITA 325



 Score = 28.9 bits (63), Expect = 8.7
 Identities = 9/31 (29%), Positives = 22/31 (70%)

Query: 272 YGFITFSDSECARRALEQLNGFELAGRPMRV 302
           +GF++F +   A+ A++ +NGF++  + ++V
Sbjct: 443 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKV 473


>gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo
           sapiens]
          Length = 486

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 56/295 (18%)

Query: 127 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 186
           ++ DA  +F  Q+   +  +DL+  F   GK+ ++ ++ DR +   KG A++ +CE +S 
Sbjct: 49  KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESA 108

Query: 187 PLAIGLTGQR--LLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDM 244
             A     ++  L G+   +Q   A+       ++ L++      +L+VG L+   +ED 
Sbjct: 109 LKAQSALHEQKTLPGMNRPIQVKPADSESRGG-SSCLRQPPSQDRKLFVGMLNKQQSEDD 167

Query: 245 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 304
           +R +FE FG I+   +++  D G SKG  F+ +S    A+ A+  L+G            
Sbjct: 168 VRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINALHG------------ 214

Query: 305 VTERLDGGTD---ITFPDGDQE--------------------LDLGSAGGRFQ------- 334
            ++ + G +    + F D D+E                    +  G+ G   Q       
Sbjct: 215 -SQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQA 273

Query: 335 -LMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNG--AVPL----GALNPAALTA 382
            LMA +A+G    L   AA AAA   Q AAL +NG  A P+    G   P  +TA
Sbjct: 274 ALMASVAQGG--YLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITA 326



 Score = 28.9 bits (63), Expect = 8.7
 Identities = 9/31 (29%), Positives = 22/31 (70%)

Query: 272 YGFITFSDSECARRALEQLNGFELAGRPMRV 302
           +GF++F +   A+ A++ +NGF++  + ++V
Sbjct: 444 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKV 474


>gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo
           sapiens]
          Length = 484

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 79/296 (26%), Positives = 131/296 (44%), Gaps = 60/296 (20%)

Query: 127 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 186
           ++ DA  +F  Q+   +  +DL+  F   GK+ ++ ++ DR +   KG A++ +CE +S 
Sbjct: 49  KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESA 108

Query: 187 PLA-IGLTGQRLL---GVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITE 242
             A   L  Q+ L     PI V+ + +E        ++  +      +L+VG L+   +E
Sbjct: 109 LKAQSALHEQKTLPGMNRPIQVKPADSESRG----GSSCLRQPPSHRKLFVGMLNKQQSE 164

Query: 243 DMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 302
           D +R +FE FG I+   +++  D G SKG  F+ +S    A+ A+  L+G          
Sbjct: 165 DDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINALHG---------- 213

Query: 303 GHVTERLDGGTD---ITFPDGDQE--------------------LDLGSAGGRFQ----- 334
              ++ + G +    + F D D+E                    +  G+ G   Q     
Sbjct: 214 ---SQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQAMQQQ 270

Query: 335 --LMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNG--AVPL----GALNPAALTA 382
             LMA +A+G    L   AA AAA   Q AAL +NG  A P+    G   P  +TA
Sbjct: 271 AALMASVAQGG--YLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITA 324



 Score = 28.9 bits (63), Expect = 8.7
 Identities = 9/31 (29%), Positives = 22/31 (70%)

Query: 272 YGFITFSDSECARRALEQLNGFELAGRPMRV 302
           +GF++F +   A+ A++ +NGF++  + ++V
Sbjct: 442 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKV 472


>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
           sapiens]
          Length = 631

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 50/178 (28%), Positives = 95/178 (53%), Gaps = 8/178 (4%)

Query: 134 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-L 192
           VF   L   I  + L D FSA G +   +++ D N   SKG A+V F   ++   AI  +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158

Query: 193 TGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPF 252
            G  L    + V   ++ K R A +    ++       +Y+ +    + ++ L+ +F  F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN----VYIKNFGEEVDDESLKELFSQF 214

Query: 253 GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 310
           GK  ++ +M+D + G+SKG+GF+++   E A +A+E++NG E++G+ + VG   ++++
Sbjct: 215 GKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271



 Score = 75.9 bits (185), Expect = 6e-14
 Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 124 LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEI 183
           L  + ++   V+       +    L++ FS  GK   V+++ D N + SKG  +V + + 
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKH 241

Query: 184 QSVPLAIG-LTGQRLLGVPIIVQASQAEKNRLAAMANNLQK------GNGGPMRLYVGSL 236
           +    A+  + G+ + G  I V  +Q +  R A +    ++           + LY+ +L
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301

Query: 237 HFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA 296
              I ++ LR  F PFG I +  +M +   GRSKG+GF+ FS  E A +A+ ++NG  + 
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359

Query: 297 GRPMRV 302
            +P+ V
Sbjct: 360 SKPLYV 365



 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 13/162 (8%)

Query: 148 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQA 206
           L + FS  G V  +R+  D  +RRS G AYV F +      A+  +    + G PI +  
Sbjct: 27  LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 86

Query: 207 SQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDT 266
           SQ +         +L+K   G   +++ +L  +I    L   F  FG I +  ++   D 
Sbjct: 87  SQRDP--------SLRKSGVG--NVFIKNLDKSIDNKALYDTFSAFGNILSCKVV--CDE 134

Query: 267 GRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 308
             SKGY F+ F   E A +A+E++NG  L  R + VG    R
Sbjct: 135 NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176



 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query: 231 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 290
           LYVG LH ++TE ML   F P G + +I + +D  T RS GY ++ F     A RAL+ +
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 291 NGFELAGRPMRV 302
           N   + G+P+R+
Sbjct: 73  NFDVIKGKPIRI 84


>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
           sapiens]
          Length = 644

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 50/178 (28%), Positives = 95/178 (53%), Gaps = 8/178 (4%)

Query: 134 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-L 192
           VF   L   I  + L D FSA G +   +++ D N   SKG A+V F   ++   AI  +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158

Query: 193 TGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPF 252
            G  L    + V   ++ K R A +    ++       +Y+ +    + ++ L+ +F  F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN----VYIKNFGEEVDDESLKELFSQF 214

Query: 253 GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 310
           GK  ++ +M+D + G+SKG+GF+++   E A +A+E++NG E++G+ + VG   ++++
Sbjct: 215 GKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271



 Score = 75.9 bits (185), Expect = 6e-14
 Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 124 LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEI 183
           L  + ++   V+       +    L++ FS  GK   V+++ D N + SKG  +V + + 
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKH 241

Query: 184 QSVPLAIG-LTGQRLLGVPIIVQASQAEKNRLAAMANNLQK------GNGGPMRLYVGSL 236
           +    A+  + G+ + G  I V  +Q +  R A +    ++           + LY+ +L
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301

Query: 237 HFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA 296
              I ++ LR  F PFG I +  +M +   GRSKG+GF+ FS  E A +A+ ++NG  + 
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359

Query: 297 GRPMRV 302
            +P+ V
Sbjct: 360 SKPLYV 365



 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 13/162 (8%)

Query: 148 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQA 206
           L + FS  G V  +R+  D  +RRS G AYV F +      A+  +    + G PI +  
Sbjct: 27  LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 86

Query: 207 SQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDT 266
           SQ +         +L+K   G   +++ +L  +I    L   F  FG I +  ++   D 
Sbjct: 87  SQRDP--------SLRKSGVG--NVFIKNLDKSIDNKALYDTFSAFGNILSCKVV--CDE 134

Query: 267 GRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 308
             SKGY F+ F   E A +A+E++NG  L  R + VG    R
Sbjct: 135 NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176



 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query: 231 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 290
           LYVG LH ++TE ML   F P G + +I + +D  T RS GY ++ F     A RAL+ +
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 291 NGFELAGRPMRV 302
           N   + G+P+R+
Sbjct: 73  NFDVIKGKPIRI 84


>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
           sapiens]
          Length = 660

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 50/178 (28%), Positives = 95/178 (53%), Gaps = 8/178 (4%)

Query: 134 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-L 192
           VF   L   I  + L D FSA G +   +++ D N   SKG A+V F   ++   AI  +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158

Query: 193 TGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPF 252
            G  L    + V   ++ K R A +    ++       +Y+ +    + ++ L+ +F  F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN----VYIKNFGEEVDDESLKELFSQF 214

Query: 253 GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 310
           GK  ++ +M+D + G+SKG+GF+++   E A +A+E++NG E++G+ + VG   ++++
Sbjct: 215 GKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271



 Score = 75.9 bits (185), Expect = 6e-14
 Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 124 LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEI 183
           L  + ++   V+       +    L++ FS  GK   V+++ D N + SKG  +V + + 
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKH 241

Query: 184 QSVPLAIG-LTGQRLLGVPIIVQASQAEKNRLAAMANNLQK------GNGGPMRLYVGSL 236
           +    A+  + G+ + G  I V  +Q +  R A +    ++           + LY+ +L
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301

Query: 237 HFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA 296
              I ++ LR  F PFG I +  +M +   GRSKG+GF+ FS  E A +A+ ++NG  + 
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359

Query: 297 GRPMRV 302
            +P+ V
Sbjct: 360 SKPLYV 365



 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 13/162 (8%)

Query: 148 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQA 206
           L + FS  G V  +R+  D  +RRS G AYV F +      A+  +    + G PI +  
Sbjct: 27  LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 86

Query: 207 SQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDT 266
           SQ +         +L+K   G   +++ +L  +I    L   F  FG I +  ++   D 
Sbjct: 87  SQRDP--------SLRKSGVG--NVFIKNLDKSIDNKALYDTFSAFGNILSCKVV--CDE 134

Query: 267 GRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 308
             SKGY F+ F   E A +A+E++NG  L  R + VG    R
Sbjct: 135 NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176



 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query: 231 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 290
           LYVG LH ++TE ML   F P G + +I + +D  T RS GY ++ F     A RAL+ +
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 291 NGFELAGRPMRV 302
           N   + G+P+R+
Sbjct: 73  NFDVIKGKPIRI 84


>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
          Length = 375

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 11/183 (6%)

Query: 127 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 186
           ++   RT++   L+  +    +   FS +G  +  ++I++  S  +    +VEF E +  
Sbjct: 4   DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDA 61

Query: 187 PLAIG-LTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDML 245
             A+  + G+++LG  +        K   A   ++ +K       ++VG L   IT + +
Sbjct: 62  AAALAAMNGRKILGKEV--------KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 113

Query: 246 RGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 305
           +  F PFGKI +  ++KD  TG+SKGYGF++F +   A  A+  + G  L GR +R    
Sbjct: 114 KSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173

Query: 306 TER 308
           T +
Sbjct: 174 TRK 176



 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 23/182 (12%)

Query: 134 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLT 193
           VF   L+  I   D++  F+  GK+ D R++ D  + +SKG  +V F        AI   
Sbjct: 99  VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158

Query: 194 GQRLLG--------------VPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFN 239
           G + LG               P   Q +  ++ R   + N     N     +Y G +   
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKN---CTVYCGGIASG 215

Query: 240 ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 299
           +T+ ++R  F PFG+I  I +  +      KGY F+ FS  E A  A+  +NG  + G  
Sbjct: 216 LTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHV 269

Query: 300 MR 301
           ++
Sbjct: 270 VK 271



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 221 LQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDS 280
           + + +G P  LYVG+L  ++TE ++  +F   G   +  ++ +  +  +  Y F+ F + 
Sbjct: 1   MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEH 58

Query: 281 ECARRALEQLNGFELAGRPMRVGHVT 306
             A  AL  +NG ++ G+ ++V   T
Sbjct: 59  RDAAAALAAMNGRKILGKEVKVNWAT 84


>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
          Length = 375

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 48/183 (26%), Positives = 92/183 (50%), Gaps = 11/183 (6%)

Query: 127 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 186
           E+   +T++   L+  +    +   FS +G  ++ ++I D  +  +    +VEF E +  
Sbjct: 2   EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHA 59

Query: 187 PLAIG-LTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDML 245
             A+  + G++++G  +        K   A   ++ +K       ++VG L   IT + +
Sbjct: 60  AAALAAMNGRKIMGKEV--------KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 111

Query: 246 RGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 305
           +  F PFG+I +  ++KD  TG+SKGYGF++F +   A  A++Q+ G  L GR +R    
Sbjct: 112 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171

Query: 306 TER 308
           T +
Sbjct: 172 TRK 174



 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 17/188 (9%)

Query: 134 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLT 193
           VF   L+  I   D++  F+  G++ D R++ D  + +SKG  +V F        AI   
Sbjct: 97  VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156

Query: 194 GQRLLG-----------VPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITE 242
           G + LG            P   +++     +  +    + + +     +Y G +   +TE
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 216

Query: 243 DMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 302
            ++R  F PFG+I  I +  D      KGY F+ F+  E A  A+  +NG  + G  ++ 
Sbjct: 217 QLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKC 270

Query: 303 GHVTERLD 310
               E LD
Sbjct: 271 YWGKETLD 278


>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
          Length = 424

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 14/187 (7%)

Query: 124 LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEI 183
           +S   +DA TV+   L  ++    L + F   G V +  +  DR + + +G  +VEF   
Sbjct: 6   ISERNQDA-TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64

Query: 184 QSVPLAIGLTGQ-RLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITE 242
           +    AI +    +L G PI V  + A    L   AN           +++G+L   I E
Sbjct: 65  EDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGAN-----------IFIGNLDPEIDE 113

Query: 243 DMLRGIFEPFGKI-DNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 301
            +L   F  FG I     +M+D DTG SKGY FI F+  + +  A+E +NG  L  RP+ 
Sbjct: 114 KLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT 173

Query: 302 VGHVTER 308
           V +  ++
Sbjct: 174 VSYAFKK 180



 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 3/98 (3%)

Query: 231 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 290
           +YVG L   ++E +L  +F   G + N  + KD  TG+ +GYGF+ F   E A  A++ +
Sbjct: 15  VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74

Query: 291 NGFELAGRPMRVGHVT---ERLDGGTDITFPDGDQELD 325
           N  +L G+P+RV   +   + LD G +I   + D E+D
Sbjct: 75  NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEID 112


>gi|20373175 musashi 2 isoform a [Homo sapiens]
          Length = 328

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 64/263 (24%), Positives = 114/263 (43%), Gaps = 23/263 (8%)

Query: 128 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 187
           + D   +F   L+ +  P  L D+FS  G++R+  ++ D  ++RS+G  +V F +  SV 
Sbjct: 17  QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV- 75

Query: 188 LAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRG 247
                   ++LG P     S+    ++A       K      +++VG L  N   + ++ 
Sbjct: 76  -------DKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQ 128

Query: 248 IFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 307
            FE FGK+++ +LM D  T R +G+GF+TF + +   +  E ++  E+  + +       
Sbjct: 129 YFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE-IHFHEINNKMVECKKAQP 187

Query: 308 RLDGGTDITFPDGDQELDLGSAGGRFQLMAKLAEGAGI----QLPSTAAAAAAAAAQAAA 363
           +     ++ FP G +    G A G    M     G G+       +T        A +  
Sbjct: 188 K-----EVMFPPGTR----GRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYG 238

Query: 364 LQLNGAVPLGALNPAALTALSPA 386
            Q  G  P  A  P A  A++ A
Sbjct: 239 YQFPG-FPAAAYGPVAAAAVAAA 260



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 25/80 (31%), Positives = 42/80 (52%)

Query: 210 EKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRS 269
           E N     + +       P ++++G L +  + D LR  F  FG+I   ++M+D  T RS
Sbjct: 2   EANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRS 61

Query: 270 KGYGFITFSDSECARRALEQ 289
           +G+GF+TF+D     + L Q
Sbjct: 62  RGFGFVTFADPASVDKVLGQ 81


>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
          Length = 636

 Score = 76.3 bits (186), Expect = 5e-14
 Identities = 49/183 (26%), Positives = 97/183 (53%), Gaps = 8/183 (4%)

Query: 134 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-L 192
           +F   L   I  + L D FSA G +   +++ D N   SKG  +V F   ++   AI  +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158

Query: 193 TGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPF 252
            G  L    + V   ++ K R A +    ++       +Y+ +   ++ ++ L+ +F  F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKDLFGKF 214

Query: 253 GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGG 312
           G   ++ +M D ++G+SKG+GF++F   E A++A++++NG EL G+ + VG   ++++  
Sbjct: 215 GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 273

Query: 313 TDI 315
           T++
Sbjct: 274 TEL 276



 Score = 72.4 bits (176), Expect = 7e-13
 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 10/186 (5%)

Query: 124 LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEI 183
           L    ++   V+       +    L+D F   G    V++++D  S +SKG  +V F   
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERH 241

Query: 184 QSVPLAIG-LTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPM------RLYVGSL 236
           +    A+  + G+ L G  I V  +Q +  R   +    ++     +       LYV +L
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301

Query: 237 HFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA 296
              I ++ LR  F PFG I +  +M +   GRSKG+GF+ FS  E A +A+ ++NG  +A
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359

Query: 297 GRPMRV 302
            +P+ V
Sbjct: 360 TKPLYV 365



 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 13/162 (8%)

Query: 148 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQA 206
           L + FS  G +  +R+  D  +RRS G AYV F +      A+  +    + G P+ +  
Sbjct: 27  LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 86

Query: 207 SQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDT 266
           SQ +         +L+K   G   +++ +L  +I    L   F  FG I +  ++   D 
Sbjct: 87  SQRDP--------SLRKSGVG--NIFIKNLDKSIDNKALYDTFSAFGNILSCKVV--CDE 134

Query: 267 GRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 308
             SKGYGF+ F   E A RA+E++NG  L  R + VG    R
Sbjct: 135 NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176



 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 30/72 (41%), Positives = 43/72 (59%)

Query: 231 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 290
           LYVG LH ++TE ML   F P G I +I + +D  T RS GY ++ F     A RAL+ +
Sbjct: 13  LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 291 NGFELAGRPMRV 302
           N   + G+P+R+
Sbjct: 73  NFDVIKGKPVRI 84


>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
          Length = 386

 Score = 75.9 bits (185), Expect = 6e-14
 Identities = 49/187 (26%), Positives = 96/187 (51%), Gaps = 8/187 (4%)

Query: 127 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 186
           E+   +T++   L+  +    +   FS +G  ++ ++I D  +  +    +VEF E +  
Sbjct: 2   EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHA 59

Query: 187 PLAIG-LTGQRLLGVPIIVQ----ASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNIT 241
             A+  + G++++G  + V      S  +K+  ++   + Q+       ++VG L   IT
Sbjct: 60  AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDH-FHVFVGDLSPEIT 118

Query: 242 EDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 301
            + ++  F PFG+I +  ++KD  TG+SKGYGF++F +   A  A++Q+ G  L GR +R
Sbjct: 119 TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178

Query: 302 VGHVTER 308
               T +
Sbjct: 179 TNWATRK 185



 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 17/188 (9%)

Query: 134 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLT 193
           VF   L+  I   D++  F+  G++ D R++ D  + +SKG  +V F        AI   
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167

Query: 194 GQRLLG-----------VPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITE 242
           G + LG            P   +++     +  +    + + +     +Y G +   +TE
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227

Query: 243 DMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 302
            ++R  F PFG+I  I +  D      KGY F+ F+  E A  A+  +NG  + G  ++ 
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKC 281

Query: 303 GHVTERLD 310
               E LD
Sbjct: 282 YWGKETLD 289


>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
           sapiens]
          Length = 420

 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 25/230 (10%)

Query: 71  RNSRSRSPGRQCRH-RSRSWDRRHGSESRSRDHRR----------EDRVHYRS-PPLATG 118
           +  R R P    RH +S S  R   + + +R  R+          ED   Y +    A G
Sbjct: 76  KGGRRRRPDLFRRHFKSSSIQRSAAAAAATRTARQHPPADSSVTMEDMNEYSNIEEFAEG 135

Query: 119 EPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYV 178
             + N S  ++D   +F   L+     +DL ++ S  G+V D  I +D  + RS+G  +V
Sbjct: 136 SKI-NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFV 194

Query: 179 EFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHF 238
            F +  SV   + L   +L G  I  + ++A             KG   P +++VG L  
Sbjct: 195 LFKDAASVDKVLELKEHKLDGKLIDPKRAKA------------LKGKEPPKKVFVGGLSP 242

Query: 239 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 288
           + +E+ ++  F  FG+I+NI L  D+ T   +G+ FIT++D E  ++ LE
Sbjct: 243 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292


>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
          Length = 631

 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 49/183 (26%), Positives = 96/183 (52%), Gaps = 8/183 (4%)

Query: 134 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-L 192
           +F   L   I  + L D  SA G +    ++ D N   SKG  +V F   ++   AI  +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKM 158

Query: 193 TGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPF 252
            G  L G  + V   ++ K R A +    ++       +Y+ +   ++ ++ L+ +F  F
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN----VYIKNFGEDMDDERLKDLFGKF 214

Query: 253 GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGG 312
           G   ++ +M D ++G+SKG+GF++F   E A++A++++NG EL G+ + VG   ++++  
Sbjct: 215 GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 273

Query: 313 TDI 315
           T++
Sbjct: 274 TEL 276



 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 10/162 (6%)

Query: 148 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQA 206
           L+D F   G    V++++D  S +SKG  +V F   +    A+  + G+ L G  I V  
Sbjct: 207 LKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265

Query: 207 SQAEKNRLAAMANNLQKGNGGPM------RLYVGSLHFNITEDMLRGIFEPFGKIDNIVL 260
           +Q +  R   +    ++     +       LYV +L   I ++ LR  F PFG I +  +
Sbjct: 266 AQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKV 325

Query: 261 MKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 302
           M +   GRSKG+GF+ FS  E A +A+ ++NG  +A +P+ V
Sbjct: 326 MMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365



 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 17/164 (10%)

Query: 148 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQA 206
           L + FS  G +  +RI  D  +  S   AYV F   +    A+  +    + G P+ +  
Sbjct: 27  LYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMW 86

Query: 207 SQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKI--DNIVLMKDS 264
           SQ +         +L+K   G   ++V +L  +I    L      FG I   N+V     
Sbjct: 87  SQRDP--------SLRKSGVG--NIFVKNLDKSINNKALYDTVSAFGNILSCNVV----C 132

Query: 265 DTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 308
           D   SKGYGF+ F   E A RA++++NG  L GR + VG    R
Sbjct: 133 DENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176



 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 27/72 (37%), Positives = 42/72 (58%)

Query: 231 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 290
           LYVG LH ++TE ML   F P G I +I + +D  T  S  Y ++ F  ++ A  AL+ +
Sbjct: 13  LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72

Query: 291 NGFELAGRPMRV 302
           N   + G+P+R+
Sbjct: 73  NFDVIKGKPVRI 84


>gi|25121993 musashi 2 isoform b [Homo sapiens]
          Length = 251

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 8/155 (5%)

Query: 134 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLT 193
           +F   L+ +  P  L D+FS  G++R+  ++ D  ++RS+G  +V F +  SV       
Sbjct: 19  MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV------- 71

Query: 194 GQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFG 253
             ++LG P     S+    ++A       K      +++VG L  N   + ++  FE FG
Sbjct: 72  -DKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFG 130

Query: 254 KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 288
           K+++ +LM D  T R +G+GF+TF + +   +  E
Sbjct: 131 KVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 165



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 230 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 289
           ++++G L +  + D LR  F  FG+I   ++M+D  T RS+G+GF+TF+D     + L Q
Sbjct: 18  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77


>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
           [Homo sapiens]
          Length = 285

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 14/174 (8%)

Query: 116 ATGEPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 175
           A G+ + N S  E DA  +F   L+     +DL+D+F+  G+V D  I  D N+ RS+G 
Sbjct: 55  AEGDQI-NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF 113

Query: 176 AYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGS 235
            ++ F +  SV   +     RL G  I       +  +  AM  +  K      +++VG 
Sbjct: 114 GFILFKDAASVEKVLDQKEHRLDGRVI-------DPKKAMAMKKDPVK------KIFVGG 160

Query: 236 LHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 289
           L+   TE+ +R  F  FG+I+ I L  D    + +G+ FITF + E  ++ LE+
Sbjct: 161 LNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214


>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
           [Homo sapiens]
          Length = 332

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 14/174 (8%)

Query: 116 ATGEPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 175
           A G+ + N S  E DA  +F   L+     +DL+D+F+  G+V D  I  D N+ RS+G 
Sbjct: 55  AEGDQI-NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF 113

Query: 176 AYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGS 235
            ++ F +  SV   +     RL G  I       +  +  AM  +  K      +++VG 
Sbjct: 114 GFILFKDAASVEKVLDQKEHRLDGRVI-------DPKKAMAMKKDPVK------KIFVGG 160

Query: 236 LHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 289
           L+   TE+ +R  F  FG+I+ I L  D    + +G+ FITF + E  ++ LE+
Sbjct: 161 LNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214


>gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
          Length = 392

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 24/198 (12%)

Query: 127 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDR-NSRR---SKGIA------ 176
           ++   RT++   L+  +    +   FS +G  +  ++I+++ +SRR   S G +      
Sbjct: 4   DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63

Query: 177 -----YVEFCEIQSVPLAIG-LTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMR 230
                +VEF E +    A+  + G+++LG  +        K   A   ++ +K       
Sbjct: 64  NDPYCFVEFYEHRDAAAALAAMNGRKILGKEV--------KVNWATTPSSQKKDTSNHFH 115

Query: 231 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 290
           ++VG L   IT + ++  F PFGKI +  ++KD  TG+SKGYGF++F +   A  A+  +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175

Query: 291 NGFELAGRPMRVGHVTER 308
            G  L GR +R    T +
Sbjct: 176 GGQWLGGRQIRTNWATRK 193



 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 23/182 (12%)

Query: 134 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLT 193
           VF   L+  I   D++  F+  GK+ D R++ D  + +SKG  +V F        AI   
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175

Query: 194 GQRLLG--------------VPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFN 239
           G + LG               P   Q +  ++ R   + N     N     +Y G +   
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKN---CTVYCGGIASG 232

Query: 240 ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 299
           +T+ ++R  F PFG+I  I +  +      KGY F+ FS  E A  A+  +NG  + G  
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHV 286

Query: 300 MR 301
           ++
Sbjct: 287 VK 288



 Score = 37.0 bits (84), Expect = 0.032
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 221 LQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGR------------ 268
           + + +G P  LYVG+L  ++TE ++  +F   G   +  ++ +    R            
Sbjct: 1   MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQ 60

Query: 269 ---SKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 306
              +  Y F+ F +   A  AL  +NG ++ G+ ++V   T
Sbjct: 61  HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 101


>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
          Length = 288

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 57/164 (34%), Positives = 76/164 (46%), Gaps = 17/164 (10%)

Query: 31  KKDYPSNTTSSTSNSGNETSGSSTIGETSNRSRDRDRYRRRNSRSRSPGRQCRHRSRSWD 90
           +++Y    + S S SG+      +   T  RSR ++  RR  S+SRS   + R RSR   
Sbjct: 6   EQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRS-ESRSRSRRSS 64

Query: 91  RRH--GSESRSRDHRRED-----------RVHYRSPPLATGEPVDN-LSPEERDARTVFC 136
           RRH   S SRSR HRR               H  SP       V N  +P+      VF 
Sbjct: 65  RRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFG 124

Query: 137 MQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 180
           + L      RDL + FS  G + DV I+ D+ SRRS+G A+V F
Sbjct: 125 LSLYTT--ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 166



 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 27/72 (37%), Positives = 42/72 (58%)

Query: 231 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 290
           L V  L    TE  LR +F  +G I ++ ++ D  + RS+G+ F+ F + + A+ A E+ 
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179

Query: 291 NGFELAGRPMRV 302
           NG EL GR +RV
Sbjct: 180 NGMELDGRRIRV 191


>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
           B1 [Homo sapiens]
          Length = 353

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 8/163 (4%)

Query: 120 PVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVE 179
           P++    E+   R +F   L+       L +++   GK+ D  ++ D  S+RS+G  +V 
Sbjct: 9   PLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVT 68

Query: 180 FCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMR-LYVGSLHF 238
           F  +  V  A+          P  +     E  R  A   + + G    ++ L+VG +  
Sbjct: 69  FSSMAEVDAAMAAR-------PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKE 121

Query: 239 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 281
           +  E  LR  FE +GKID I ++ D  +G+ +G+GF+TF D +
Sbjct: 122 DTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,068,401
Number of Sequences: 37866
Number of extensions: 705393
Number of successful extensions: 8249
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 197
Number of HSP's that attempted gapping in prelim test: 4874
Number of HSP's gapped (non-prelim): 2118
length of query: 405
length of database: 18,247,518
effective HSP length: 105
effective length of query: 300
effective length of database: 14,271,588
effective search space: 4281476400
effective search space used: 4281476400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.