Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 116642885
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116642885 myofibrillogenesis regulator 1 isoform 3 [Homo
sapiens]
(142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116642885 myofibrillogenesis regulator 1 isoform 3 [Homo sapi... 281 2e-76
gi|116642887 myofibrillogenesis regulator 1 isoform 1 [Homo sapi... 158 1e-39
gi|195972871 phospholipase C eta 1 isoform a [Homo sapiens] 30 0.88
gi|57863298 phospholipase C eta 1 isoform b [Homo sapiens] 30 0.88
gi|119120907 par-3 partitioning defective 3 homolog B isoform a ... 29 1.1
gi|119120903 par-3 partitioning defective 3 homolog B isoform c ... 29 1.1
gi|119120897 par-3 partitioning defective 3 homolog B isoform b ... 29 1.1
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 28 2.0
gi|154816198 transcription elongation factor B polypeptide 3C-li... 28 2.0
gi|156938279 transcription elongation factor B polypeptide 3C [H... 28 2.0
gi|122937261 coiled-coil domain containing 85A [Homo sapiens] 28 2.0
gi|21361684 G patch domain containing 1 [Homo sapiens] 28 3.3
gi|112807226 hypothetical protein LOC91748 [Homo sapiens] 27 4.4
gi|42263098 Sp6 transcription factor [Homo sapiens] 27 4.4
gi|44890062 hypothetical protein LOC91748 [Homo sapiens] 27 4.4
gi|13129094 ashwin [Homo sapiens] 27 5.7
gi|35493853 otoferlin isoform c [Homo sapiens] 27 7.4
gi|35493868 otoferlin isoform b [Homo sapiens] 27 7.4
gi|35493860 otoferlin isoform d [Homo sapiens] 27 7.4
gi|34740331 otoferlin isoform a [Homo sapiens] 27 7.4
gi|21314671 transient receptor potential cation channel, subfami... 27 7.4
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 27 7.4
gi|4502365 NK3 homeobox 2 [Homo sapiens] 27 7.4
gi|4758220 XAP-5 protein [Homo sapiens] 26 9.7
gi|21735548 centrosomal protein 2 [Homo sapiens] 26 9.7
gi|169160873 PREDICTED: similar to hCG2040319 [Homo sapiens] 26 9.7
gi|239747400 PREDICTED: similar to hCG2040319 [Homo sapiens] 26 9.7
gi|239741226 PREDICTED: similar to hCG2040319 [Homo sapiens] 26 9.7
>gi|116642885 myofibrillogenesis regulator 1 isoform 3 [Homo
sapiens]
Length = 142
Score = 281 bits (718), Expect = 2e-76
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MAAVVAATALKGRGARNARVLRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPEL 60
MAAVVAATALKGRGARNARVLRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPEL
Sbjct: 1 MAAVVAATALKGRGARNARVLRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPEL 60
Query: 61 EYIPRKRGKNPMKAVGLAWAIGFPCGILLFILTKREVDKDRVKQMKARQNMRLSNTGEYE 120
EYIPRKRGKNPMKAVGLAWAIGFPCGILLFILTKREVDKDRVKQMKARQNMRLSNTGEYE
Sbjct: 61 EYIPRKRGKNPMKAVGLAWAIGFPCGILLFILTKREVDKDRVKQMKARQNMRLSNTGEYE 120
Query: 121 SQRFRASSQSAPSPDVGSGVQT 142
SQRFRASSQSAPSPDVGSGVQT
Sbjct: 121 SQRFRASSQSAPSPDVGSGVQT 142
>gi|116642887 myofibrillogenesis regulator 1 isoform 1 [Homo
sapiens]
Length = 385
Score = 158 bits (400), Expect = 1e-39
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MAAVVAATALKGRGARNARVLRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPEL 60
MAAVVAATALKGRGARNARVLRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPEL
Sbjct: 1 MAAVVAATALKGRGARNARVLRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPEL 60
Query: 61 EYIPRKRGKNPMKAVGLAW 79
EYIPRKRGKNPMKAVGLAW
Sbjct: 61 EYIPRKRGKNPMKAVGLAW 79
>gi|195972871 phospholipase C eta 1 isoform a [Homo sapiens]
Length = 1693
Score = 29.6 bits (65), Expect = 0.88
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 85 CGILLFILTKREVDKDRVKQMKARQNMRLSNTGEYESQRFRASSQSAPSPDVGSGV 140
C +L ++ + V+++ +R R+ N ++ A+ Q P+P G+GV
Sbjct: 1558 CQVLYSKQDANQLPRALVRKLSSRSQSRVRNIASRAKEKQEANKQKVPNPSNGAGV 1613
>gi|57863298 phospholipase C eta 1 isoform b [Homo sapiens]
Length = 1655
Score = 29.6 bits (65), Expect = 0.88
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 85 CGILLFILTKREVDKDRVKQMKARQNMRLSNTGEYESQRFRASSQSAPSPDVGSGV 140
C +L ++ + V+++ +R R+ N ++ A+ Q P+P G+GV
Sbjct: 1520 CQVLYSKQDANQLPRALVRKLSSRSQSRVRNIASRAKEKQEANKQKVPNPSNGAGV 1575
>gi|119120907 par-3 partitioning defective 3 homolog B isoform a
[Homo sapiens]
Length = 1104
Score = 29.3 bits (64), Expect = 1.1
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 24 ILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPELEYIPRKRGKNPMKAVG 76
I A ++K+SH+ AL S+P+G E E + + + + + K K G
Sbjct: 795 IEADGLSDKSSHSGQGALNCESAPQGNSELEDMENKARKVKKTKEKEKKKEKG 847
>gi|119120903 par-3 partitioning defective 3 homolog B isoform c
[Homo sapiens]
Length = 1136
Score = 29.3 bits (64), Expect = 1.1
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 21 LRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPELEYIPRKRGKNPMKAVG 76
L G + ++K+SH+ AL S+P+G E E + + + + + K K G
Sbjct: 723 LAGQKSDGLSDKSSHSGQGALNCESAPQGNSELEDMENKARKVKKTKEKEKKKEKG 778
>gi|119120897 par-3 partitioning defective 3 homolog B isoform b
[Homo sapiens]
Length = 1143
Score = 29.3 bits (64), Expect = 1.1
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 24 ILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPELEYIPRKRGKNPMKAVG 76
I A ++K+SH+ AL S+P+G E E + + + + + K K G
Sbjct: 733 IEADGLSDKSSHSGQGALNCESAPQGNSELEDMENKARKVKKTKEKEKKKEKG 785
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 28.5 bits (62), Expect = 2.0
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 16 RNARVLRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPELEYIPRKRGK 69
R R+L + +GA+++ + R RA ++ S G EE P S +PRK G+
Sbjct: 1097 RQGRLLLRLASGASSSSSEEQR-RASETLSGT-GSEEDTPASEPAAALPRKSGR 1148
>gi|154816198 transcription elongation factor B polypeptide 3C-like
[Homo sapiens]
Length = 546
Score = 28.5 bits (62), Expect = 2.0
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 23 GILAGATANKA-SHNRTRALQSHSSPEGKEEPEPLSPELEYIPRKRGKNPMKA 74
G ATA ++ SH+ + +P G++ P P SP E PR K P A
Sbjct: 111 GFPENATAPRSPSHSPEHRRTARRTPPGQQRPHPRSPSRE--PRAERKRPRMA 161
>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
sapiens]
Length = 546
Score = 28.5 bits (62), Expect = 2.0
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 23 GILAGATANKA-SHNRTRALQSHSSPEGKEEPEPLSPELEYIPRKRGKNPMKA 74
G ATA ++ SH+ + +P G++ P P SP E PR K P A
Sbjct: 111 GFPENATAPRSPSHSPEHRRTARRTPPGQQRPHPRSPSRE--PRAERKRPRMA 161
>gi|122937261 coiled-coil domain containing 85A [Homo sapiens]
Length = 553
Score = 28.5 bits (62), Expect = 2.0
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 21/77 (27%)
Query: 11 KGRGARNARVL------RGI-------------LAGATANKASHNRTRALQSHSSPEGKE 51
KG G+R RVL RGI +GA + +S N + H++P +
Sbjct: 457 KGWGSRARRVLQWWQGCRGIGRCLPTLPGSFRLSSGADGSNSSPNSAASFSGHATPS--Q 514
Query: 52 EPEPLSPELEYIPRKRG 68
+PEP+ L+ + RK G
Sbjct: 515 QPEPVVHSLKVVWRKLG 531
>gi|21361684 G patch domain containing 1 [Homo sapiens]
Length = 931
Score = 27.7 bits (60), Expect = 3.3
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 16/112 (14%)
Query: 33 ASHNRTRALQSHSSPEGKEEPEPLSPELEYIPRKR-----GKNPMKAVGLAWAIGFPCGI 87
A+ + LQ S GK P+P + + + G+ P++ G +
Sbjct: 383 ATSENSHLLQVLSESAGKATPDPGTHSKHQLNASKRAELLGETPIQ--------GSATSV 434
Query: 88 LLFILTKREVDKDRVKQMKARQNMRLSNTGEYESQRFRASSQSAPSPDVGSG 139
L F+ K DK+R+K+MK +++ + + SS++ SP +G
Sbjct: 435 LEFLSQK---DKERIKEMKQATDLKAAQLKARSLAQNAQSSRAQLSPAAAAG 483
>gi|112807226 hypothetical protein LOC91748 [Homo sapiens]
Length = 1045
Score = 27.3 bits (59), Expect = 4.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 32 KASHNRTRALQSHSSPEGKEEPEPLSPELEYI 63
KA + R R L P KE+P PL P + I
Sbjct: 8 KAQNKRKRCLFGGQEPAPKEQPPPLQPPQQSI 39
>gi|42263098 Sp6 transcription factor [Homo sapiens]
Length = 376
Score = 27.3 bits (59), Expect = 4.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 42 QSHSSPEGKEEPEPLSP-ELEYIP 64
Q H+SPE + P PL P EL+ +P
Sbjct: 33 QGHTSPEAGDYPSPLQPGELQSLP 56
>gi|44890062 hypothetical protein LOC91748 [Homo sapiens]
Length = 1045
Score = 27.3 bits (59), Expect = 4.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 32 KASHNRTRALQSHSSPEGKEEPEPLSPELEYI 63
KA + R R L P KE+P PL P + I
Sbjct: 8 KAQNKRKRCLFGGQEPAPKEQPPPLQPPQQSI 39
>gi|13129094 ashwin [Homo sapiens]
Length = 232
Score = 26.9 bits (58), Expect = 5.7
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 31 NKASHNRTRALQSH-----SSPEGKEEPEPLSP 58
NK HN A Q+H SP G + PLSP
Sbjct: 162 NKTEHNNNDAKQNHDLTHRKSPSGPVKSPPLSP 194
>gi|35493853 otoferlin isoform c [Homo sapiens]
Length = 1307
Score = 26.6 bits (57), Expect = 7.4
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 17 NARVLRGILAGAT-ANKASHNRTRALQSHSSPEGKEEPEPLSPELE 61
N L+G + G A A + + QS S +G E PE P+++
Sbjct: 671 NTEGLKGSMKGKEKARAAKEEKKKKTQSSGSGQGSEAPEKKKPKID 716
>gi|35493868 otoferlin isoform b [Homo sapiens]
Length = 1230
Score = 26.6 bits (57), Expect = 7.4
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 17 NARVLRGILAGAT-ANKASHNRTRALQSHSSPEGKEEPEPLSPELE 61
N L+G + G A A + + QS S +G E PE P+++
Sbjct: 594 NTEGLKGSMKGKEKARAAKEEKKKKTQSSGSGQGSEAPEKKKPKID 639
>gi|35493860 otoferlin isoform d [Homo sapiens]
Length = 1230
Score = 26.6 bits (57), Expect = 7.4
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 17 NARVLRGILAGAT-ANKASHNRTRALQSHSSPEGKEEPEPLSPELE 61
N L+G + G A A + + QS S +G E PE P+++
Sbjct: 594 NTEGLKGSMKGKEKARAAKEEKKKKTQSSGSGQGSEAPEKKKPKID 639
>gi|34740331 otoferlin isoform a [Homo sapiens]
Length = 1997
Score = 26.6 bits (57), Expect = 7.4
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 17 NARVLRGILAGAT-ANKASHNRTRALQSHSSPEGKEEPEPLSPELE 61
N L+G + G A A + + QS S +G E PE P+++
Sbjct: 1361 NTEGLKGSMKGKEKARAAKEEKKKKTQSSGSGQGSEAPEKKKPKID 1406
>gi|21314671 transient receptor potential cation channel, subfamily M,
member 4 [Homo sapiens]
Length = 1214
Score = 26.6 bits (57), Expect = 7.4
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 53 PEPLSPELEYIPRKRGKNPMKAVGLAWAIGFPCGILLF-ILTKREVDKDRVKQMKARQNM 111
P+P SP LE+ K + + L W LL KRE D +R+K+ + ++
Sbjct: 1099 PQPSSPALEHFRVYLSKEAERKL-LTWESVHKENFLLARARDKRESDSERLKRTSQKVDL 1157
Query: 112 RLSNTG---EYESQ 122
L G EYE +
Sbjct: 1158 ALKQLGHIREYEQR 1171
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 26.6 bits (57), Expect = 7.4
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 22 RGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPELEYIPRKRGKNPMK 73
R I + T+ SH R + +SHS + SP R R + P K
Sbjct: 451 REISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTK 502
>gi|4502365 NK3 homeobox 2 [Homo sapiens]
Length = 333
Score = 26.6 bits (57), Expect = 7.4
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 1 MAAVVAATALKGRGARNARVLRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPEL 60
+AA A + G R+A L G A+ A RT A ++ SPEG + LS E
Sbjct: 43 VAAAPAVCCWRLFGERDAGALGGAEDSLLASPAG-TRTAAGRTAESPEGWDSDSALSEEN 101
Query: 61 EYIPRKRGKNPMKAVGLA 78
E R GLA
Sbjct: 102 ESRRRCADARGASGAGLA 119
>gi|4758220 XAP-5 protein [Homo sapiens]
Length = 339
Score = 26.2 bits (56), Expect = 9.7
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 86 GILLFILTKREVDKDRVKQMK---ARQNMRLSNTGEYESQRFRASSQSAPSPDVG 137
G + ++ KRE +++++QMK A +N+ SN + S + A S VG
Sbjct: 12 GRAMHLMKKREKQREQMEQMKQRIAEENIMKSNIDKKFSAHYDAVEAELKSSTVG 66
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 26.2 bits (56), Expect = 9.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 92 LTKREVDKDRVKQMKARQNMRLSNTGEYESQRFRASS-QSAPSPD 135
LT+R ++K+R+ A L + GE Q S ++ PSPD
Sbjct: 2217 LTRRALEKERLHSPGATSTAELGSRGEQGVQLGEVSGVEAEPSPD 2261
>gi|169160873 PREDICTED: similar to hCG2040319 [Homo sapiens]
Length = 274
Score = 26.2 bits (56), Expect = 9.7
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 16 RNARVLRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPELEYIPRKRGK 69
R AR R ++A AT + T A +P EP+ + PR RG+
Sbjct: 116 RKARAARTLMASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQSPRVRGR 169
>gi|239747400 PREDICTED: similar to hCG2040319 [Homo sapiens]
Length = 274
Score = 26.2 bits (56), Expect = 9.7
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 16 RNARVLRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPELEYIPRKRGK 69
R AR R ++A AT + T A +P EP+ + PR RG+
Sbjct: 116 RKARAARTLMASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQSPRVRGR 169
>gi|239741226 PREDICTED: similar to hCG2040319 [Homo sapiens]
Length = 274
Score = 26.2 bits (56), Expect = 9.7
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 16 RNARVLRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPELEYIPRKRGK 69
R AR R ++A AT + T A +P EP+ + PR RG+
Sbjct: 116 RKARAARTLMASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQSPRVRGR 169
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.128 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,367,348
Number of Sequences: 37866
Number of extensions: 242417
Number of successful extensions: 771
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 32
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.