Guide to the Human Genome
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Name: PNKD Sequence: fasta or formatted (385aa) NCBI GI: 116642887
Description:

myofibrillogenesis regulator 1 isoform 1

Referenced in:

Glutathione Pathways

Other entries for this name:
alt prot [142aa] myofibrillogenesis regulator 1 isoform 3
alt prot [361aa] myofibrillogenesis regulator 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         30           2
 C cysteine            1.8          7           1
 D aspartate           4.7         18           3
 E glutamate           6.0         23           2
 F phenylalanine       1.8          7           1
 G glycine             9.1         35           2
 H histidine           3.6         14           1
 I isoleucine          2.3          9           2
 K lysine              4.4         17           1
 L leucine            12.5         48           2
 M methionine          1.3          5           1
 N asparagine          3.1         12           1
 P proline             6.5         25           1
 Q glutamine           4.2         16           2
 R arginine            8.8         34           2
 S serine              6.2         24           2
 T threonine           5.2         20           1
 V valine              5.5         21           2
 W tryptophan          1.3          5           1
 Y tyrosine            3.9         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myofibrillogenesis regulator 1 isoform 1 
PNKD                  0.799   myofibrillogenesis regulator 1 isoform 2 
HAGH                  0.222   hydroxyacylglutathione hydrolase isoform 2 
HAGH                  0.222   hydroxyacylglutathione hydrolase isoform 1 
HAGHL                 0.203   hydroxyacylglutathione hydrolase-like isoform 2 [Hom...
HAGHL                 0.175   hydroxyacylglutathione hydrolase-like isoform 1 [Hom...
PNKD                  0.173   myofibrillogenesis regulator 1 isoform 3 
ETHE1                 0.065   ETHE1 protein 
LACTB2                0.034   lactamase, beta 2 
WDR54                 0.013   WD repeat domain 54 
TRIM47                0.009   tripartite motif-containing 47 
MBLAC2                0.008   beta-lactamase-like 
LOC100292590          0.007   PREDICTED: hypothetical protein 
SLC8A2                0.007   solute carrier family 8 member 2 
PARD3B                0.005   par-3 partitioning defective 3 homolog B isoform a ...
PARD3B                0.005   par-3 partitioning defective 3 homolog B isoform c ...
PARD3B                0.005   par-3 partitioning defective 3 homolog B isoform b ...
FAM186B               0.005   hypothetical protein LOC84070 
SUSD2                 0.005   sushi domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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