Guide to the Human Genome
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Name: C2orf49 Sequence: fasta or formatted (232aa) NCBI GI: 13129094
Description:

ashwin

Referenced in:

Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         11           2
 C cysteine            0.4          1           1
 D aspartate           5.2         12           1
 E glutamate           6.0         14           2
 F phenylalanine       1.7          4           1
 G glycine             3.9          9           2
 H histidine           3.0          7           1
 I isoleucine          3.0          7           1
 K lysine             10.3         24           2
 L leucine            10.3         24           3
 M methionine          1.7          4           2
 N asparagine          7.3         17           3
 P proline             8.6         20           3
 Q glutamine           3.9          9           1
 R arginine            5.6         13           1
 S serine             10.3         24           4
 T threonine           6.5         15           2
 V valine              6.0         14           1
 W tryptophan          0.9          2           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ashwin 
LOC646644             0.025   PREDICTED: similar to LLP homolog 
LOC646644             0.025   PREDICTED: similar to LLP homolog 
LOC646644             0.025   PREDICTED: similar to LLP homolog 
ESYT3                 0.023   family with sequence similarity 62 (C2 domain conta...
RSL1D1                0.023   ribosomal L1 domain containing 1 
LOC643446             0.020   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.020   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.020   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.020   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.020   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.020   PREDICTED: similar to ribonucleic acid binding prote...
LLPH                  0.020   LLP homolog 
RNPS1                 0.020   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.020   RNA-binding protein S1, serine-rich domain 
FAM133A               0.018   hypothetical protein LOC286499 
BRD4                  0.016   bromodomain-containing protein 4 isoform short 
BRD4                  0.016   bromodomain-containing protein 4 isoform long 
JPH1                  0.016   junctophilin 1 
ZNF592                0.016   zinc finger protein 592 
MORC2                 0.016   MORC family CW-type zinc finger 2 
SLAIN2                0.016   SLAIN motif family, member 2 
LOC392555             0.016   PREDICTED: similar to melanoma antigen family C, 2 ...
LOC392555             0.016   PREDICTED: similar to melanoma antigen family C, 2 ...
IRF2BP2               0.016   interferon regulatory factor 2 binding protein 2 is...
IRF2BP2               0.016   interferon regulatory factor 2 binding protein 2 is...
SSFA2                 0.016   sperm specific antigen 2 isoform 1 
SSFA2                 0.016   sperm specific antigen 2 isoform 2 
SETD1A                0.016   SET domain containing 1A 
PCLO                  0.016   piccolo isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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