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Search of human proteins with 116642878
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116642878 hypothetical protein LOC400223 [Homo sapiens]
(166 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116642878 hypothetical protein LOC400223 [Homo sapiens] 337 2e-93
gi|18079216 CASK interacting protein 1 [Homo sapiens] 39 0.003
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 37 0.006
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 36 0.013
gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo ... 35 0.023
gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo ... 35 0.023
gi|239746363 PREDICTED: hypothetical protein XP_002343737 [Homo ... 35 0.023
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 35 0.029
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 35 0.029
gi|164565408 common-site lymphoma/leukemia guanine nucleotide ex... 35 0.029
gi|239753428 PREDICTED: hypothetical protein [Homo sapiens] 34 0.050
gi|239747997 PREDICTED: hypothetical protein [Homo sapiens] 34 0.050
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 34 0.066
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 34 0.066
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 34 0.066
gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens] 34 0.066
gi|223972612 Crm, cramped-like [Homo sapiens] 33 0.11
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 33 0.15
gi|239755187 PREDICTED: similar to hemicentin 2 [Homo sapiens] 33 0.15
gi|239753114 PREDICTED: hypothetical protein [Homo sapiens] 33 0.15
gi|157676331 hyaluronan binding protein 4 [Homo sapiens] 33 0.15
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|239754438 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo ... 32 0.19
gi|239742988 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|239742950 PREDICTED: hypothetical protein XP_002342702 [Homo ... 32 0.19
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 32 0.19
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 32 0.19
gi|46249382 paired-like homeobox 2a [Homo sapiens] 32 0.19
gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precurs... 32 0.19
>gi|116642878 hypothetical protein LOC400223 [Homo sapiens]
Length = 166
Score = 337 bits (865), Expect = 2e-93
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MNTYTRSASFTPKTFTFPLAQNRTSHPTTTSKLKYLGRPSPRRDALQANGEGPEVGPGTE 60
MNTYTRSASFTPKTFTFPLAQNRTSHPTTTSKLKYLGRPSPRRDALQANGEGPEVGPGTE
Sbjct: 1 MNTYTRSASFTPKTFTFPLAQNRTSHPTTTSKLKYLGRPSPRRDALQANGEGPEVGPGTE 60
Query: 61 EPAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKLAGDGHARLASAFLHRRAALPPPLG 120
EPAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKLAGDGHARLASAFLHRRAALPPPLG
Sbjct: 61 EPAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKLAGDGHARLASAFLHRRAALPPPLG 120
Query: 121 TCRPRLGEGGSAPALGPSPRRGRRVSEGLRDSLPPLGSLTLGKSPK 166
TCRPRLGEGGSAPALGPSPRRGRRVSEGLRDSLPPLGSLTLGKSPK
Sbjct: 121 TCRPRLGEGGSAPALGPSPRRGRRVSEGLRDSLPPLGSLTLGKSPK 166
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 38.5 bits (88), Expect = 0.003
Identities = 37/115 (32%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Query: 44 DALQANGEGP-EVGPGTEEPAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKLAGDGHA 102
D LQA GP EVGP TE+P+ LP + +SLG R+ + +L GDG
Sbjct: 659 DELQAAMTGPAEVGPTTEKPSSHLPPTPRATTRQDSSLGG---RARHMSSSQELLGDGPP 715
Query: 103 RLASAFLHRRAALPPPLGTCRPRLGEGGSAPALGP-SPRRGRRVSEGLRDSLPPL 156
+S P+ + L + G AP P R GR R S+PP+
Sbjct: 716 GPSS-----------PMSRSQEYLLDEGPAPGTPPREARPGRHGHSIKRASVPPV 759
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 37.4 bits (85), Expect = 0.006
Identities = 45/135 (33%), Positives = 51/135 (37%), Gaps = 34/135 (25%)
Query: 39 PSPRRDALQANGE-GPEVGPGTEEPAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKLA 97
P P A +A G G E GP R P +G AAA R RS A C +
Sbjct: 97 PGPAPGAPRARGSCGREPGPRRR----RAPSSAGKRPAAAARAAPPRQRS-LARCLPRSV 151
Query: 98 GD------------GHARLASAFLHRRAALP--PPLGTCRPRLGE-----------GGSA 132
G H R RR LP PPL +PRLG G A
Sbjct: 152 GSCVRPSVGPSLPRRHCRRHCRCHCRRRPLPKPPPL---QPRLGSASPPRLAAPLAGSRA 208
Query: 133 PALGPSPRRGRRVSE 147
P+L P PRR RR +E
Sbjct: 209 PSLSPFPRRCRRRAE 223
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 36.2 bits (82), Expect = 0.013
Identities = 42/140 (30%), Positives = 52/140 (37%), Gaps = 21/140 (15%)
Query: 36 LGRPSPRRDALQANGEGPEVGPGTEEPA--HRLPVGSGSAGEAAASL----GTARVRSGR 89
+GR R + P +G T P R P +G A++ G R SGR
Sbjct: 251 VGRRRRERSDPPGSYHDPALGLRTPGPILEGRGPRAAGPCPANTAAVDKTQGGWRAVSGR 310
Query: 90 AECTAKLAGDGHARLASAFLHRRAALPPPLGTCRPRLGEGGSAPALGPSPR-------RG 142
AE + A D H+RL R AL L C R P GP PR G
Sbjct: 311 AEAQRR-AADHHSRL-------RTALGSGLRVCSSRPAAPSVCPVRGPPPRPGTVRSQLG 362
Query: 143 RRVSEGLRDSLPPLGSLTLG 162
R +EG PP G+ G
Sbjct: 363 ARANEGGGAPRPPAGARVFG 382
>gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo
sapiens]
Length = 330
Score = 35.4 bits (80), Expect = 0.023
Identities = 35/115 (30%), Positives = 43/115 (37%), Gaps = 12/115 (10%)
Query: 37 GRPSPRRDALQANGEGPEVGPGT----EEPAHRLPVGSGSAGEAAASLGTARVRSGRAEC 92
GR S A A+G + P T E P R SGSAGE AA GTA R
Sbjct: 22 GRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERGAP 81
Query: 93 TAKLAGDGHA----RLASAFLHRRAALPPPLGTCRPRLGEGGSAPALGPSPRRGR 143
G G RL + + + P CR + S + +PR GR
Sbjct: 82 AGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCR----KSPSGAEMDRAPRSGR 132
>gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo
sapiens]
Length = 330
Score = 35.4 bits (80), Expect = 0.023
Identities = 35/115 (30%), Positives = 43/115 (37%), Gaps = 12/115 (10%)
Query: 37 GRPSPRRDALQANGEGPEVGPGT----EEPAHRLPVGSGSAGEAAASLGTARVRSGRAEC 92
GR S A A+G + P T E P R SGSAGE AA GTA R
Sbjct: 22 GRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERGAP 81
Query: 93 TAKLAGDGHA----RLASAFLHRRAALPPPLGTCRPRLGEGGSAPALGPSPRRGR 143
G G RL + + + P CR + S + +PR GR
Sbjct: 82 AGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCR----KSPSGAEMDRAPRSGR 132
>gi|239746363 PREDICTED: hypothetical protein XP_002343737 [Homo
sapiens]
Length = 179
Score = 35.4 bits (80), Expect = 0.023
Identities = 35/115 (30%), Positives = 43/115 (37%), Gaps = 12/115 (10%)
Query: 37 GRPSPRRDALQANGEGPEVGPGT----EEPAHRLPVGSGSAGEAAASLGTARVRSGRAEC 92
GR S A A+G + P T E P R SGSAGE AA GTA R
Sbjct: 22 GRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERGAP 81
Query: 93 TAKLAGDGHA----RLASAFLHRRAALPPPLGTCRPRLGEGGSAPALGPSPRRGR 143
G G RL + + + P CR + S + +PR GR
Sbjct: 82 AGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCR----KSPSGAEMDRAPRSGR 132
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 35.0 bits (79), Expect = 0.029
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 62 PAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKLAGDGHARLASAFLHRRAALPPPLGT 121
P R +GS G A AR S + A+L LA++ L P LG+
Sbjct: 229 PRAREEAAAGSRGRGGAERPAAR-GSAQQPPLARLLLASAVSLAASLARSPPPLQPRLGS 287
Query: 122 CRP-RLGE---GGSAPALGPSPRRGRRVSE 147
P RL G AP+L P PRR RR +E
Sbjct: 288 ASPPRLAAPLAGSRAPSLSPFPRRCRRRAE 317
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 35.0 bits (79), Expect = 0.029
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 62 PAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKLAGDGHARLASAFLHRRAALPPPLGT 121
P R +GS G A AR S + A+L LA++ L P LG+
Sbjct: 229 PRAREEAAAGSRGRGGAERPAAR-GSAQQPPLARLLLASAVSLAASLARSPPPLQPRLGS 287
Query: 122 CRP-RLGE---GGSAPALGPSPRRGRRVSE 147
P RL G AP+L P PRR RR +E
Sbjct: 288 ASPPRLAAPLAGSRAPSLSPFPRRCRRRAE 317
>gi|164565408 common-site lymphoma/leukemia guanine nucleotide
exchange factor [Homo sapiens]
Length = 1386
Score = 35.0 bits (79), Expect = 0.029
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 7/44 (15%)
Query: 115 LPPPLGTCRPR------LGEGGSAPALGPSP-RRGRRVSEGLRD 151
L PPLG+ RPR G +AP+ GPS RRGRR SE ++D
Sbjct: 444 LTPPLGSPRPRDARSFTPGRRNTAPSPGPSVIRRGRRQSEPVKD 487
>gi|239753428 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 34.3 bits (77), Expect = 0.050
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 51 EGPEVGPGTEEPAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKLAGDGHARLASAFLH 110
EG E G G +HR + G AG AA G R SG +G+ A A++ L
Sbjct: 42 EGRERGTGGGGWSHRRVLSLGQAGRRAAGWGGGREGSG--------SGETPAASAASLLL 93
Query: 111 RRAALPPPLGTCR 123
R+ P PL C+
Sbjct: 94 RQRLRPDPLRLCQ 106
>gi|239747997 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 34.3 bits (77), Expect = 0.050
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 51 EGPEVGPGTEEPAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKLAGDGHARLASAFLH 110
EG E G G +HR + G AG AA G R SG +G+ A A++ L
Sbjct: 42 EGRERGTGGGGWSHRRVLSLGQAGRRAAGWGGGREGSG--------SGETPAASAASLLL 93
Query: 111 RRAALPPPLGTCR 123
R+ P PL C+
Sbjct: 94 RQRLRPDPLRLCQ 106
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 33.9 bits (76), Expect = 0.066
Identities = 34/109 (31%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 38 RPSPRRDALQANGEGPEVGPGTEEPAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKLA 97
RP P A GP PGT GS + G A G + + A C L+
Sbjct: 196 RPEPGPHHTGARQAGPL--PGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLG-LS 252
Query: 98 GDGHARLASAFLHRRAALPPPLGTCRPRLGEGGSAPALGPSPRRGRRVS 146
G +RL S P RP L + PAL PS RR RV+
Sbjct: 253 PPGRSRLFS----------PRSSLARPPLRFPPARPALSPSARRRCRVN 291
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 33.9 bits (76), Expect = 0.066
Identities = 34/109 (31%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 38 RPSPRRDALQANGEGPEVGPGTEEPAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKLA 97
RP P A GP PGT GS + G A G + + A C L+
Sbjct: 196 RPEPGPHHTGARQAGPL--PGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLG-LS 252
Query: 98 GDGHARLASAFLHRRAALPPPLGTCRPRLGEGGSAPALGPSPRRGRRVS 146
G +RL S P RP L + PAL PS RR RV+
Sbjct: 253 PPGRSRLFS----------PRSSLARPPLRFPPARPALSPSARRRCRVN 291
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 33.9 bits (76), Expect = 0.066
Identities = 34/109 (31%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 38 RPSPRRDALQANGEGPEVGPGTEEPAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKLA 97
RP P A GP PGT GS + G A G + + A C L+
Sbjct: 196 RPEPGPHHTGARQAGPL--PGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLG-LS 252
Query: 98 GDGHARLASAFLHRRAALPPPLGTCRPRLGEGGSAPALGPSPRRGRRVS 146
G +RL S P RP L + PAL PS RR RV+
Sbjct: 253 PPGRSRLFS----------PRSSLARPPLRFPPARPALSPSARRRCRVN 291
>gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens]
Length = 1843
Score = 33.9 bits (76), Expect = 0.066
Identities = 43/137 (31%), Positives = 55/137 (40%), Gaps = 27/137 (19%)
Query: 50 GEGPEVGPGTEEPAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKLAGDGHARLAS--- 106
G G GPG EEP + G G+A A + +++ AE T K A G LAS
Sbjct: 1184 GPGQSTGPGREEPGGCTQMAWGPPGKAMAEVCPGGLQA--AETTLKTAPLGRHILASGPQ 1241
Query: 107 ---AFLH-RRAALPPPLGTCRPRLGEGGSAPALGPSPRRG----RRVSEGLRDSL----- 153
A H A +PPP P L + P R ++ SE L+D L
Sbjct: 1242 AAGASPHPHNAFVPPP-----PTLPAAVTGPDFPAGAHRAEDSIQQASEPLKDPLLHSHS 1296
Query: 154 PPLGSLTLG----KSPK 166
P G T G K+PK
Sbjct: 1297 SPAGQRTPGGSQTKTPK 1313
>gi|223972612 Crm, cramped-like [Homo sapiens]
Length = 1269
Score = 33.1 bits (74), Expect = 0.11
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 20 AQNRTSHPTTTSKLKYLGRPSPRRDALQANGE-GPEVGPG 58
A+ + P + ++ K +GRP P DALQ++GE PE PG
Sbjct: 457 ARGQVKCPRSGAEGKGVGRPPPAADALQSSGESSPESAPG 496
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 32.7 bits (73), Expect = 0.15
Identities = 38/126 (30%), Positives = 47/126 (37%), Gaps = 19/126 (15%)
Query: 24 TSHPTTTSKLKYLGRPSPRRDALQANGEGPEVGPGTEEPAH-RLPVGSGSAGEAAASLG- 81
T P T++ L +G +P A P P + EP + VGS + A A G
Sbjct: 277 TRAPRTSAGLAGVGSGAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGP 336
Query: 82 ---TARVRSGRAECTAKLAGDGHARLASAFLHRRAALPPPLGTCRPRLGEGGSAPALGPS 138
A+ G L DG AR A PP PR GS PAL +
Sbjct: 337 CPAAAQGARGSWPSPRCLPSDGGAREA-----------PPTSAPHPR-RPAGSPPAL--A 382
Query: 139 PRRGRR 144
R GRR
Sbjct: 383 DREGRR 388
>gi|239755187 PREDICTED: similar to hemicentin 2 [Homo sapiens]
Length = 1215
Score = 32.7 bits (73), Expect = 0.15
Identities = 35/114 (30%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 47 QANGEGPEVGPGTEEPAHRLPVGSGSAGEAAASLGTARVR---SGRAECTAKL-AGDGHA 102
+A G P + T++ P+ + + SL A+V+ SG ECTA AG
Sbjct: 979 EAKGSPPPLVTWTKDSRPVPPITNRYGLLPSGSLRLAQVQVGDSGHYECTASNPAGSASH 1038
Query: 103 RLASAFLHRRAALPPPLGTCR-PRLGEGGSAPALGPSPRRGRRVSEGLRDSLPP 155
R R + P L P G S P L P+PR R LR LPP
Sbjct: 1039 RYVLGVQGRTSWQPQSLPVPHHPACLSGLSVPLLQPTPRSVRLCHLSLRAPLPP 1092
>gi|239753114 PREDICTED: hypothetical protein [Homo sapiens]
Length = 322
Score = 32.7 bits (73), Expect = 0.15
Identities = 30/97 (30%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 70 SGSAGEAAASLGTARVRSGRAECTAKLAGDGHARLASAFLHRRAAL-PPPLGTCRPRLGE 128
+GS A LG + S R A LA + HR + PPP P G
Sbjct: 137 TGSLTYVAGDLGASGAVSARVRARASLALGLPIQC-----HRHISTEPPPPPPAAPATGS 191
Query: 129 GGSAPALGPSPRRGRRVSEGLRDSLPPLGSLTLGKSP 165
S P P+P R ++ G S PPL LG+ P
Sbjct: 192 AQSRPR--PAPARAPLIAPGAHQSAPPLP--VLGRLP 224
>gi|157676331 hyaluronan binding protein 4 [Homo sapiens]
Length = 413
Score = 32.7 bits (73), Expect = 0.15
Identities = 32/87 (36%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 75 EAAASLGTARVRSGRAECTAK--LAGDGHARLASAFLHRRAALPPPLGTCRPRLGEGGSA 132
EAAA+ G A R GR+ A AG G R + R +LP P+ G G A
Sbjct: 60 EAAAAAG-AGPRGGRSPAGASGHRAGAGGRRESQK---ERKSLPAPVAQRPDSPGGGLQA 115
Query: 133 PALGPSPRRGRRVSEGLRDSLPPLGSL 159
P +PRRG + +G DS P G L
Sbjct: 116 PGQKRTPRRGEQ--QGWNDSRGPEGML 140
>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 32.3 bits (72), Expect = 0.19
Identities = 38/126 (30%), Positives = 46/126 (36%), Gaps = 12/126 (9%)
Query: 42 RRDALQANGEGPEVGPGT-EEPAHRLPVGSGSAGEAAASLGTAR-VRSGRAECTAKLAGD 99
R A A E P+ EEPA + G G G A R + + A LA
Sbjct: 55 RAGAAPATAESPDTPEEPPEEPAPAIAPGGGGGGCGAQHWAAGRRAQREQGAGAAVLADF 114
Query: 100 GHARLASAFLHRRAALPPPLGTCRPRLGEGGSAPALGPSPRRGRRVSEGLRDSLPPLGSL 159
GH R A + L RR L R G G+ A P P R G SLP +
Sbjct: 115 GHVRAAPSGLRRRR-----LQRRRGGRGGRGAGRARKPGPDRA-----GAERSLPAHRAP 164
Query: 160 TLGKSP 165
L + P
Sbjct: 165 RLARPP 170
>gi|239754438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 709
Score = 32.3 bits (72), Expect = 0.19
Identities = 41/141 (29%), Positives = 53/141 (37%), Gaps = 15/141 (10%)
Query: 23 RTSHPTTTSKLKYLGRPSPRRDALQAN-GEGPEVGPGTEEPAHRLPVGSGSAGEAAASLG 81
R +H L+ +G S RR A + P E R P+ G
Sbjct: 15 RPAHAEMVPGLQAVGVRSSRRSGRSAQLSASTSLCPAVEVVGERAPLVLG---------- 64
Query: 82 TARVRSGRAECTAKLAGDGHARLASAFLHRRAALPPPLGTCRPRLGEGGSAPALGPSPRR 141
+R RA +LAGDG RL A R+AL G P LG G + G + R
Sbjct: 65 -LDLRQQRAALDRELAGDGPRRLLPAL--GRSALGDWAGIGHP-LGWGLLGGSPGAAGGR 120
Query: 142 GRRVSEGLRDSLPPLGSLTLG 162
G EG +LP G + G
Sbjct: 121 GGHGLEGTAPALPLRGGRSRG 141
>gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo
sapiens]
Length = 709
Score = 32.3 bits (72), Expect = 0.19
Identities = 41/141 (29%), Positives = 53/141 (37%), Gaps = 15/141 (10%)
Query: 23 RTSHPTTTSKLKYLGRPSPRRDALQAN-GEGPEVGPGTEEPAHRLPVGSGSAGEAAASLG 81
R +H L+ +G S RR A + P E R P+ G
Sbjct: 15 RPAHAEMVPGLQAVGVRSSRRSGRSAQLSASTSLCPAVEVVGERAPLVLG---------- 64
Query: 82 TARVRSGRAECTAKLAGDGHARLASAFLHRRAALPPPLGTCRPRLGEGGSAPALGPSPRR 141
+R RA +LAGDG RL A R+AL G P LG G + G + R
Sbjct: 65 -LDLRQQRAALDRELAGDGPRRLLPAL--GRSALGDWAGIGHP-LGWGLLGGSPGAAGGR 120
Query: 142 GRRVSEGLRDSLPPLGSLTLG 162
G EG +LP G + G
Sbjct: 121 GGHGLEGTAPALPLRGGRSRG 141
>gi|239742988 PREDICTED: hypothetical protein [Homo sapiens]
Length = 470
Score = 32.3 bits (72), Expect = 0.19
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 60 EEPAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKLAGDGHARLASAFLHRRAALPPPL 119
EE A L VG+ A A L A++ A A + + HAR A+ RA P
Sbjct: 302 EEAAGHLAVGAAGLTGAHADLALAQLLGADAAAAAAVQHEAHARRAARRRLVRAPARPAA 361
Query: 120 GTCRPRL--GEGGSAPALGPSPRRGR 143
RL G+GG ++G GR
Sbjct: 362 VLADGRLQGGQGGQRRSVGAHALPGR 387
>gi|239742950 PREDICTED: hypothetical protein XP_002342702 [Homo
sapiens]
Length = 709
Score = 32.3 bits (72), Expect = 0.19
Identities = 41/141 (29%), Positives = 53/141 (37%), Gaps = 15/141 (10%)
Query: 23 RTSHPTTTSKLKYLGRPSPRRDALQAN-GEGPEVGPGTEEPAHRLPVGSGSAGEAAASLG 81
R +H L+ +G S RR A + P E R P+ G
Sbjct: 15 RPAHAEMVPGLQAVGVRSSRRSGRSAQLSASTSLCPAVEVVGERAPLVLG---------- 64
Query: 82 TARVRSGRAECTAKLAGDGHARLASAFLHRRAALPPPLGTCRPRLGEGGSAPALGPSPRR 141
+R RA +LAGDG RL A R+AL G P LG G + G + R
Sbjct: 65 -LDLRQQRAALDRELAGDGPRRLLPAL--GRSALGDWAGIGHP-LGWGLLGGSPGAAGGR 120
Query: 142 GRRVSEGLRDSLPPLGSLTLG 162
G EG +LP G + G
Sbjct: 121 GGHGLEGTAPALPLRGGRSRG 141
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 32.3 bits (72), Expect = 0.19
Identities = 35/123 (28%), Positives = 44/123 (35%), Gaps = 22/123 (17%)
Query: 37 GRPSPRRDALQANGEGPEVGPGTEEPAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKL 96
G P P+ A A GP G G P G G+ AAA+ TA +
Sbjct: 117 GVPMPQAPAGLA---GPVRGVGGPSQQVMTPQGRGTVAAAAAA------------ATASI 161
Query: 97 AGDGHARLASAFLHRRAALPPPLGTCRPRLGEGGSAPALGP--SPRRGRRVSEGLRDSLP 154
AG + + R PPP+G P G G P + P P G G +P
Sbjct: 162 AG-----APTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMP 216
Query: 155 PLG 157
P G
Sbjct: 217 PPG 219
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 32.3 bits (72), Expect = 0.19
Identities = 35/123 (28%), Positives = 44/123 (35%), Gaps = 22/123 (17%)
Query: 37 GRPSPRRDALQANGEGPEVGPGTEEPAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKL 96
G P P+ A A GP G G P G G+ AAA+ TA +
Sbjct: 117 GVPMPQAPAGLA---GPVRGVGGPSQQVMTPQGRGTVAAAAAA------------ATASI 161
Query: 97 AGDGHARLASAFLHRRAALPPPLGTCRPRLGEGGSAPALGP--SPRRGRRVSEGLRDSLP 154
AG + + R PPP+G P G G P + P P G G +P
Sbjct: 162 AG-----APTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMP 216
Query: 155 PLG 157
P G
Sbjct: 217 PPG 219
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 32.3 bits (72), Expect = 0.19
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 73 AGEAAASLGTARVRSGRAECTAKLAGDGHARLASAFLHRRAALPPPL--GTCRPRLGEG- 129
A A + G A + G A C+++ D S A+LPPP G PRL
Sbjct: 151 AASAKGAAGAAGAKKGEARCSSE-DDDSKESTCSPTPDSTASLPPPPAPGLASPRLSPSP 209
Query: 130 -----GSAPALGPSPR 140
GS P GP P+
Sbjct: 210 LPVALGSGPGPGPGPQ 225
>gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precursor
[Homo sapiens]
Length = 864
Score = 32.3 bits (72), Expect = 0.19
Identities = 32/97 (32%), Positives = 36/97 (37%), Gaps = 12/97 (12%)
Query: 62 PAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKLAGDG-HARLASAFLHRRAALPPPLG 120
P R G G G A + RVR+G E AG G A L R A P L
Sbjct: 199 PGSRRWAGGGGGGGGATYV--FRVRAGELEPLLVAAGGGGRAYLRPRDRGRTQASPEKLE 256
Query: 121 TCRPRLGEGGSAPALG---------PSPRRGRRVSEG 148
G GG A G PSP+ GR + EG
Sbjct: 257 NRSEAPGSGGRGGAAGGGGGWTSRAPSPQAGRSLQEG 293
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,999,301
Number of Sequences: 37866
Number of extensions: 460289
Number of successful extensions: 2044
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 177
Number of HSP's that attempted gapping in prelim test: 1942
Number of HSP's gapped (non-prelim): 288
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.