Guide to the Human Genome
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Name: LOC100287771 Sequence: fasta or formatted (263aa) NCBI GI: 239744384
Description:

PREDICTED: hypothetical protein XP_002343133

Not currently referenced in the text

Other entries for this name:
alt prot {263aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         16           3
 C cysteine            3.4          9           1
 D aspartate           1.9          5           1
 E glutamate           5.3         14           2
 F phenylalanine       2.7          7           1
 G glycine             9.1         24           4
 H histidine           4.9         13           1
 I isoleucine          3.4          9           2
 K lysine              2.7          7           2
 L leucine             9.9         26           2
 M methionine          1.9          5           1
 N asparagine          3.4          9           1
 P proline             8.7         23           2
 Q glutamine           1.9          5           1
 R arginine            8.0         21           3
 S serine             14.1         37           2
 T threonine           6.1         16           2
 V valine              3.4          9           2
 W tryptophan          2.3          6           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343133 
LOC100287771          0.996   PREDICTED: hypothetical protein 
LOC100292824          0.021   PREDICTED: hypothetical protein 
ATN1                  0.015   atrophin-1 
ATN1                  0.015   atrophin-1 
FOXB2                 0.015   forkhead box B2 
ZSCAN1                0.013   zinc finger and SCAN domain containing 1 
FOXA1                 0.011   forkhead box A1 
SH3KBP1               0.011   SH3-domain kinase binding protein 1 isoform b 
SH3KBP1               0.011   SH3-domain kinase binding protein 1 isoform a 
HIC1                  0.011   hypermethylated in cancer 1 isoform 2 
HIC1                  0.011   hypermethylated in cancer 1 isoform 1 
ANKS1B                0.009   cajalin 2 isoform a 
KIAA1522              0.009   hypothetical protein LOC57648 
KLF6                  0.008   Kruppel-like factor 6 isoform C 
KLF6                  0.008   Kruppel-like factor 6 isoform A 
EGR3                  0.008   early growth response 3 
LOC100292124          0.008   PREDICTED: hypothetical protein XP_002346387 
LOC100130370          0.008   PREDICTED: similar to hCG1816473 
LOC100292133          0.008   PREDICTED: hypothetical protein 
LOC100294354          0.008   PREDICTED: hypothetical protein 
LOC100130370          0.008   PREDICTED: similar to hCG1816473 
IRS2                  0.008   insulin receptor substrate 2 
SHANK1                0.008   SH3 and multiple ankyrin repeat domains 1 
STAG3                 0.006   stromal antigen 3 
NRG2                  0.006   neuregulin 2 isoform 2 
NRG2                  0.006   neuregulin 2 isoform 4 
NRG2                  0.006   neuregulin 2 isoform 3 
NRG2                  0.006   neuregulin 2 isoform 1 
FAM83A                0.006   hypothetical protein LOC84985 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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