Guide to the Human Genome
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Name: KLF6 Sequence: fasta or formatted (237aa) NCBI GI: 236460752
Description:

Kruppel-like factor 6 isoform C

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [241aa] Kruppel-like factor 6 isoform B
alt prot [283aa] Kruppel-like factor 6 isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.5          6           1
 C cysteine            3.4          8           1
 D aspartate           4.2         10           1
 E glutamate           9.3         22           2
 F phenylalanine       3.0          7           1
 G glycine             6.3         15           1
 H histidine           2.5          6           1
 I isoleucine          3.4          8           2
 K lysine              5.5         13           2
 L leucine             8.9         21           1
 M methionine          0.8          2           1
 N asparagine          2.1          5           1
 P proline             8.0         19           2
 Q glutamine           3.4          8           2
 R arginine            4.2         10           3
 S serine             16.5         39           3
 T threonine           6.8         16           2
 V valine              5.1         12           1
 W tryptophan          1.7          4           1
 Y tyrosine            2.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Kruppel-like factor 6 isoform C 
KLF6                  0.950   Kruppel-like factor 6 isoform A 
KLF6                  0.787   Kruppel-like factor 6 isoform B 
KLF7                  0.289   Kruppel-like factor 7 (ubiquitous) 
KLF12                 0.103   Kruppel-like factor 12 
KLF3                  0.095   Kruppel-like factor 3 (basic) 
KLF13                 0.093   Kruppel-like factor 13 
KLF9                  0.086   Kruppel-like factor 9 
KLF8                  0.084   Kruppel-like factor 8 isoform 1 
KLF5                  0.080   Kruppel-like factor 5 
SP8                   0.075   Sp8 transcription factor isoform 1 
SP8                   0.075   Sp8 transcription factor isoform 2 
SP1                   0.075   Sp1 transcription factor isoform a 
SP1                   0.075   Sp1 transcription factor isoform b 
KLF14                 0.071   Kruppel-like factor 14 
KLF15                 0.071   Kruppel-like factor 15 
KLF1                  0.069   Kruppel-like factor 1 (erythroid) 
KLF16                 0.069   BTE-binding protein 4 
SP4                   0.065   Sp4 transcription factor 
KLF4                  0.065   Kruppel-like factor 4 (gut) 
KLF11                 0.062   Kruppel-like factor 11 
SP5                   0.062   Sp5 transcription factor 
SP7                   0.062   osterix 
KLF2                  0.062   Kruppel-like factor 
SP9                   0.060   Sp9 transcription factor homolog 
SP3                   0.060   Sp3 transcription factor isoform 2 
SP3                   0.060   Sp3 transcription factor isoform 1 
SP6                   0.058   Sp6 transcription factor 
KLF17                 0.056   zinc finger protein 393 
KLF10                 0.052   Kruppel-like factor 10 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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