Guide to the Human Genome
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Search of human proteins with 239743967

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743967 PREDICTED: hypothetical protein XP_002344251 [Homo
sapiens]
         (275 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239749701 PREDICTED: hypothetical protein XP_002347123 [Homo ...   567   e-162
gi|239743967 PREDICTED: hypothetical protein XP_002344251 [Homo ...   567   e-162
gi|239753887 PREDICTED: hypothetical protein [Homo sapiens]            35   0.054
gi|15029506 homeobox D8 [Homo sapiens]                                 33   0.35 
gi|239755402 PREDICTED: hypothetical protein [Homo sapiens]            32   0.46 
gi|239749910 PREDICTED: hypothetical protein XP_002347211 [Homo ...    32   0.46 
gi|239744211 PREDICTED: hypothetical protein XP_002343075 [Homo ...    32   0.46 
gi|14916433 naked cuticle homolog 1 [Homo sapiens]                     32   0.79 
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      31   1.3  
gi|14916427 naked cuticle homolog 2 [Homo sapiens]                     31   1.3  
gi|110681708 zinc finger protein 579 [Homo sapiens]                    31   1.3  
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]            30   1.8  
gi|42476101 TFIIA alpha, p55 isoform 2 [Homo sapiens]                  30   2.3  
gi|7706735 TFIIA alpha, p55 isoform 1 [Homo sapiens]                   30   2.3  
gi|158420731 chromodomain helicase DNA binding protein 3 isoform...    30   3.0  
gi|7669528 neuregulin 2 isoform 2 [Homo sapiens]                       29   3.9  
gi|7669532 neuregulin 2 isoform 4 [Homo sapiens]                       29   3.9  
gi|7669530 neuregulin 2 isoform 3 [Homo sapiens]                       29   3.9  
gi|4758832 neuregulin 2 isoform 1 [Homo sapiens]                       29   3.9  
gi|239754301 PREDICTED: hypothetical protein XP_002345934 [Homo ...    29   5.1  
gi|239748840 PREDICTED: hypothetical protein XP_002346835 [Homo ...    29   5.1  
gi|239742867 PREDICTED: hypothetical protein XP_002342667 [Homo ...    29   5.1  
gi|189217895 KH domain-containing, RNA-binding, signal transduct...    29   5.1  
gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]       29   5.1  
gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]       29   5.1  
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo...    28   6.7  
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo...    28   6.7  
gi|157739942 gemin 5 [Homo sapiens]                                    28   6.7  
gi|21361912 DnaJ (Hsp40) homolog, subfamily C, member 1 [Homo sa...    28   6.7  
gi|10835246 Kruppel-like factor 1 (erythroid) [Homo sapiens]           28   8.7  

>gi|239749701 PREDICTED: hypothetical protein XP_002347123 [Homo
           sapiens]
          Length = 275

 Score =  567 bits (1462), Expect = e-162
 Identities = 275/275 (100%), Positives = 275/275 (100%)

Query: 1   MAPAVRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQG 60
           MAPAVRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQG
Sbjct: 1   MAPAVRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQG 60

Query: 61  VRCGPALGGTLDGVLAQLLLAAVVGEDHLLAVCVTLEDHVGVQHAAELPQEVEGAVAQLL 120
           VRCGPALGGTLDGVLAQLLLAAVVGEDHLLAVCVTLEDHVGVQHAAELPQEVEGAVAQLL
Sbjct: 61  VRCGPALGGTLDGVLAQLLLAAVVGEDHLLAVCVTLEDHVGVQHAAELPQEVEGAVAQLL 120

Query: 121 RRHQHHHHQRAGRQPLGYMLRTVQPVPLALRAVAALVAVPVAEVVLAVLVVQGAPYLHWP 180
           RRHQHHHHQRAGRQPLGYMLRTVQPVPLALRAVAALVAVPVAEVVLAVLVVQGAPYLHWP
Sbjct: 121 RRHQHHHHQRAGRQPLGYMLRTVQPVPLALRAVAALVAVPVAEVVLAVLVVQGAPYLHWP 180

Query: 181 SARWQSKPSKRQPAELHWLSQWPSLKYFQHCRDCVQFFQGSLKLREQSPPSQPHAWLLHC 240
           SARWQSKPSKRQPAELHWLSQWPSLKYFQHCRDCVQFFQGSLKLREQSPPSQPHAWLLHC
Sbjct: 181 SARWQSKPSKRQPAELHWLSQWPSLKYFQHCRDCVQFFQGSLKLREQSPPSQPHAWLLHC 240

Query: 241 RLQTLLPASSWHSGSSHASSISGGGMSRPAPPPKL 275
           RLQTLLPASSWHSGSSHASSISGGGMSRPAPPPKL
Sbjct: 241 RLQTLLPASSWHSGSSHASSISGGGMSRPAPPPKL 275


>gi|239743967 PREDICTED: hypothetical protein XP_002344251 [Homo
           sapiens]
          Length = 275

 Score =  567 bits (1462), Expect = e-162
 Identities = 275/275 (100%), Positives = 275/275 (100%)

Query: 1   MAPAVRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQG 60
           MAPAVRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQG
Sbjct: 1   MAPAVRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQG 60

Query: 61  VRCGPALGGTLDGVLAQLLLAAVVGEDHLLAVCVTLEDHVGVQHAAELPQEVEGAVAQLL 120
           VRCGPALGGTLDGVLAQLLLAAVVGEDHLLAVCVTLEDHVGVQHAAELPQEVEGAVAQLL
Sbjct: 61  VRCGPALGGTLDGVLAQLLLAAVVGEDHLLAVCVTLEDHVGVQHAAELPQEVEGAVAQLL 120

Query: 121 RRHQHHHHQRAGRQPLGYMLRTVQPVPLALRAVAALVAVPVAEVVLAVLVVQGAPYLHWP 180
           RRHQHHHHQRAGRQPLGYMLRTVQPVPLALRAVAALVAVPVAEVVLAVLVVQGAPYLHWP
Sbjct: 121 RRHQHHHHQRAGRQPLGYMLRTVQPVPLALRAVAALVAVPVAEVVLAVLVVQGAPYLHWP 180

Query: 181 SARWQSKPSKRQPAELHWLSQWPSLKYFQHCRDCVQFFQGSLKLREQSPPSQPHAWLLHC 240
           SARWQSKPSKRQPAELHWLSQWPSLKYFQHCRDCVQFFQGSLKLREQSPPSQPHAWLLHC
Sbjct: 181 SARWQSKPSKRQPAELHWLSQWPSLKYFQHCRDCVQFFQGSLKLREQSPPSQPHAWLLHC 240

Query: 241 RLQTLLPASSWHSGSSHASSISGGGMSRPAPPPKL 275
           RLQTLLPASSWHSGSSHASSISGGGMSRPAPPPKL
Sbjct: 241 RLQTLLPASSWHSGSSHASSISGGGMSRPAPPPKL 275


>gi|239753887 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 127

 Score = 35.4 bits (80), Expect = 0.054
 Identities = 28/80 (35%), Positives = 33/80 (41%), Gaps = 16/80 (20%)

Query: 1  MAPAVRGREAVGEGPGELRGLTVGA------------GSHSPADVHGVQLPPPP---PTL 45
          M  A RGR   G GPGE    T+ A            G+H P  V G+Q+P      P  
Sbjct: 1  MTWACRGRREAGAGPGEADFRTIWACRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGE 60

Query: 46 AATREQRGLHLAQQGVRCGP 65
          A  R + GL     G  CGP
Sbjct: 61 ATVRPELGLGSLASG-SCGP 79


>gi|15029506 homeobox D8 [Homo sapiens]
          Length = 290

 Score = 32.7 bits (73), Expect = 0.35
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 2  APAVRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPP--TLAATREQRG 53
          AP V GR A      +L G +     H+P   H    P PPP  T    RE RG
Sbjct: 37 APEVGGRHAAAAAALQLYGNSAAGFPHAPPQAHAHPHPSPPPSGTGCGGREGRG 90


>gi|239755402 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 321

 Score = 32.3 bits (72), Expect = 0.46
 Identities = 30/86 (34%), Positives = 34/86 (39%), Gaps = 14/86 (16%)

Query: 64  GPALGGTLDGVLAQLLLAAVV----------GEDHLLAVCVTLEDHVGVQH---AAELPQ 110
           G  L G  D   AQLL  AVV          G  H   V   L    GV+      E+PQ
Sbjct: 2   GGYLAGPSDQQFAQLLAEAVVQPGVDEGVVAGRTHGEPVAEQLHQPKGVRVDGVGVEVPQ 61

Query: 111 EVEGAVAQLL-RRHQHHHHQRAGRQP 135
           +VE    Q     H H HHQ+A   P
Sbjct: 62  QVEDVQRQPADGEHHHDHHQQAEGAP 87


>gi|239749910 PREDICTED: hypothetical protein XP_002347211 [Homo
           sapiens]
          Length = 321

 Score = 32.3 bits (72), Expect = 0.46
 Identities = 30/86 (34%), Positives = 34/86 (39%), Gaps = 14/86 (16%)

Query: 64  GPALGGTLDGVLAQLLLAAVV----------GEDHLLAVCVTLEDHVGVQH---AAELPQ 110
           G  L G  D   AQLL  AVV          G  H   V   L    GV+      E+PQ
Sbjct: 2   GGYLAGPSDQQFAQLLAEAVVQPGVDEGVVAGRTHGEPVAEQLHQPKGVRVDGVGVEVPQ 61

Query: 111 EVEGAVAQLL-RRHQHHHHQRAGRQP 135
           +VE    Q     H H HHQ+A   P
Sbjct: 62  QVEDVQRQPADGEHHHDHHQQAEGAP 87


>gi|239744211 PREDICTED: hypothetical protein XP_002343075 [Homo
           sapiens]
          Length = 321

 Score = 32.3 bits (72), Expect = 0.46
 Identities = 30/86 (34%), Positives = 34/86 (39%), Gaps = 14/86 (16%)

Query: 64  GPALGGTLDGVLAQLLLAAVV----------GEDHLLAVCVTLEDHVGVQH---AAELPQ 110
           G  L G  D   AQLL  AVV          G  H   V   L    GV+      E+PQ
Sbjct: 2   GGYLAGPSDQQFAQLLAEAVVQPGVDEGVVAGRTHGEPVAEQLHQPKGVRVDGVGVEVPQ 61

Query: 111 EVEGAVAQLL-RRHQHHHHQRAGRQP 135
           +VE    Q     H H HHQ+A   P
Sbjct: 62  QVEDVQRQPADGEHHHDHHQQAEGAP 87


>gi|14916433 naked cuticle homolog 1 [Homo sapiens]
          Length = 470

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 100 VGVQHAAELPQEV--EGAVAQLLRRHQHHHH 128
           +G +H  ELP  V  E    Q ++RH+HHHH
Sbjct: 427 LGREHLRELPALVVYESQAGQPVQRHEHHHH 457


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 2   APAVRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGL 54
           AP  RG   +   PG LRG   GAG   P    G   PP PP  A T   +G+
Sbjct: 679 APGERGPPGLAGAPG-LRG---GAGPPGPEGGKGAAGPPGPPGAAGTPGLQGM 727


>gi|14916427 naked cuticle homolog 2 [Homo sapiens]
          Length = 451

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 17/100 (17%)

Query: 29  SPADVHGVQLPPPPPTLAATREQRGLHLAQQGVRCGPALGGTLDGVLAQLLLAAVVGEDH 88
           +P D H +  PPPPP       Q+G       ++   A   T++  + + L     GE +
Sbjct: 365 APQDGHHLPQPPPPPYGHKRYRQKGRE-GHSPLKAPHAQPATVEHEVVRDLPPTPAGEGY 423

Query: 89  LLAVCVTLEDHVGVQHAAELPQEVEGAVAQLLRRHQHHHH 128
            + V    E H   +H                  H HHHH
Sbjct: 424 AVPVIQRHEHHHHHEH----------------HHHHHHHH 447


>gi|110681708 zinc finger protein 579 [Homo sapiens]
          Length = 562

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 39  PPPPPTLAATREQRGLHLAQQGVRCGPALGGT 70
           PPPPP L A +E+ GL L    ++  P   GT
Sbjct: 485 PPPPPPLKAEQEEEGLPLPLANIKEEPPSPGT 516


>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 650

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 14  GPGELRGLTVGAGSHSPA--DVHGV--QLPPPPPTLAATREQRGLHL 56
           G  E RG + GAG H  A  D H    +LP PP  +A  R   G HL
Sbjct: 545 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALVAGHRTVLGKHL 591


>gi|42476101 TFIIA alpha, p55 isoform 2 [Homo sapiens]
          Length = 337

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 118 QLLRRHQHHHHQRA-GRQPLGYMLRTVQP-VPLALRAVAALVAVPVAEVV 165
           Q  + H HHHHQ+A  +Q +    +T Q  +P + +A A  V VP ++++
Sbjct: 38  QQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLI 87


>gi|7706735 TFIIA alpha, p55 isoform 1 [Homo sapiens]
          Length = 376

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 118 QLLRRHQHHHHQRA-GRQPLGYMLRTVQP-VPLALRAVAALVAVPVAEVV 165
           Q  + H HHHHQ+A  +Q +    +T Q  +P + +A A  V VP ++++
Sbjct: 77  QQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLI 126


>gi|158420731 chromodomain helicase DNA binding protein 3 isoform
          3 [Homo sapiens]
          Length = 2059

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 11 VGEGPGELRGLTVGAGSHSPADVHGVQLPPPPP 43
          +G GPG  RG       HSP   H    PPPPP
Sbjct: 52 LGRGPGHDRG----RDRHSPPGCHLFPPPPPPP 80


>gi|7669528 neuregulin 2 isoform 2 [Homo sapiens]
          Length = 844

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 248 ASSWHSGSSHASSISGGGMSRPAPPPK 274
           +SS  SGSS  SS +   +SRPA PP+
Sbjct: 38  SSSSESGSSSRSSSNNSSISRPAAPPE 64


>gi|7669532 neuregulin 2 isoform 4 [Homo sapiens]
          Length = 852

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 248 ASSWHSGSSHASSISGGGMSRPAPPPK 274
           +SS  SGSS  SS +   +SRPA PP+
Sbjct: 38  SSSSESGSSSRSSSNNSSISRPAAPPE 64


>gi|7669530 neuregulin 2 isoform 3 [Homo sapiens]
          Length = 858

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 248 ASSWHSGSSHASSISGGGMSRPAPPPK 274
           +SS  SGSS  SS +   +SRPA PP+
Sbjct: 38  SSSSESGSSSRSSSNNSSISRPAAPPE 64


>gi|4758832 neuregulin 2 isoform 1 [Homo sapiens]
          Length = 850

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 248 ASSWHSGSSHASSISGGGMSRPAPPPK 274
           +SS  SGSS  SS +   +SRPA PP+
Sbjct: 38  SSSSESGSSSRSSSNNSSISRPAAPPE 64


>gi|239754301 PREDICTED: hypothetical protein XP_002345934 [Homo
           sapiens]
          Length = 221

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 19  RGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQGVRCGPALGGTLDGVLAQL 78
           R L  G G   PA   G + P P P  +A     G HL         A GG  + V+  L
Sbjct: 98  RTLRRGEGRGGPAQ--GARGPTPTPRGSAPPRPPGPHLRVVAAHLAWAAGGGAEVVVLTL 155

Query: 79  LLAAVVGEDHLLAV 92
           ++  + G+ H+ A+
Sbjct: 156 VVPLLHGQRHVHAL 169


>gi|239748840 PREDICTED: hypothetical protein XP_002346835 [Homo
           sapiens]
          Length = 221

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 19  RGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQGVRCGPALGGTLDGVLAQL 78
           R L  G G   PA   G + P P P  +A     G HL         A GG  + V+  L
Sbjct: 98  RTLRRGEGRGGPAQ--GARGPTPTPRGSAPPRPPGPHLRVVAAHLAWAAGGGAEVVVLTL 155

Query: 79  LLAAVVGEDHLLAV 92
           ++  + G+ H+ A+
Sbjct: 156 VVPLLHGQRHVHAL 169


>gi|239742867 PREDICTED: hypothetical protein XP_002342667 [Homo
           sapiens]
          Length = 221

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 19  RGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQGVRCGPALGGTLDGVLAQL 78
           R L  G G   PA   G + P P P  +A     G HL         A GG  + V+  L
Sbjct: 98  RTLRRGEGRGGPAQ--GARGPTPTPRGSAPPRPPGPHLRVVAAHLAWAAGGGAEVVVLTL 155

Query: 79  LLAAVVGEDHLLAV 92
           ++  + G+ H+ A+
Sbjct: 156 VVPLLHGQRHVHAL 169


>gi|189217895 KH domain-containing, RNA-binding, signal
           transduction-associated protein 2 [Homo sapiens]
          Length = 349

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 5   VRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQGVRCG 64
           + G E  G G G +RG  +     +P+   G  +PPPPP        RG  + +  +   
Sbjct: 178 LNGSEDSGRGRG-IRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVP 236

Query: 65  PALGG 69
           P   G
Sbjct: 237 PVARG 241


>gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]
          Length = 660

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 12/108 (11%)

Query: 180 PSARWQSKPSKRQPAELHWLSQWPSLKYFQ-HCRDCVQFFQGS-LKLREQSPPSQPHAWL 237
           P A   SK    + A ++ + + P +  F   C +C ++F G  +++ E+   +    + 
Sbjct: 11  PDAGEDSKSENGENAPIYCICRKPDINCFMIGCDNCNEWFHGDCIRITEKMAKAIREWYC 70

Query: 238 LHCR-------LQTLLPASSWHSGSSHASSI---SGGGMSRPAPPPKL 275
             CR       ++     S    G+   SS     GGG  RP P P L
Sbjct: 71  RECREKDPKLEIRYRHKKSRERDGNERDSSEPRDEGGGRKRPVPDPDL 118


>gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]
          Length = 656

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 12/108 (11%)

Query: 180 PSARWQSKPSKRQPAELHWLSQWPSLKYFQ-HCRDCVQFFQGS-LKLREQSPPSQPHAWL 237
           P A   SK    + A ++ + + P +  F   C +C ++F G  +++ E+   +    + 
Sbjct: 11  PDAGEDSKSENGENAPIYCICRKPDINCFMIGCDNCNEWFHGDCIRITEKMAKAIREWYC 70

Query: 238 LHCR-------LQTLLPASSWHSGSSHASSI---SGGGMSRPAPPPKL 275
             CR       ++     S    G+   SS     GGG  RP P P L
Sbjct: 71  RECREKDPKLEIRYRHKKSRERDGNERDSSEPRDEGGGRKRPVPDPDL 118


>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
           sapiens]
          Length = 1059

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 8   REAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAA---TREQRGL-----HLAQQ 59
           R     GPG   GL   AG+  P      Q PP PP  AA   T++ +G      +L ++
Sbjct: 164 RGGPASGPGVTPGLGAPAGAPGPLPAPS-QTPPGPPAAAACDPTKDDKGYFRRLKYLMER 222

Query: 60  GVRCG 64
              CG
Sbjct: 223 RFPCG 227


>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
           sapiens]
          Length = 1059

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 8   REAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAA---TREQRGL-----HLAQQ 59
           R     GPG   GL   AG+  P      Q PP PP  AA   T++ +G      +L ++
Sbjct: 164 RGGPASGPGVTPGLGAPAGAPGPLPAPS-QTPPGPPAAAACDPTKDDKGYFRRLKYLMER 222

Query: 60  GVRCG 64
              CG
Sbjct: 223 RFPCG 227


>gi|157739942 gemin 5 [Homo sapiens]
          Length = 1508

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 13/72 (18%)

Query: 80   LAAVVGEDHLLA--------VCVTLEDHVGVQHAAELPQEVEG-----AVAQLLRRHQHH 126
            LAA+VGED L A          +   + VG Q A +L + ++G      + +LL RH   
Sbjct: 1074 LAAIVGEDELSASLALRCAQELLLANNWVGAQEALQLHESLQGQRLVFCLLELLSRHLEE 1133

Query: 127  HHQRAGRQPLGY 138
                 G+    Y
Sbjct: 1134 KQLSEGKSSSSY 1145


>gi|21361912 DnaJ (Hsp40) homolog, subfamily C, member 1 [Homo
           sapiens]
          Length = 554

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 229 PPSQPHAWLLHCRLQTLLPASSWHSG 254
           PP  P  WLL   L  + PA  W SG
Sbjct: 26  PPRTPLLWLLLLLLAAVAPARGWESG 51


>gi|10835246 Kruppel-like factor 1 (erythroid) [Homo sapiens]
          Length = 362

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 29  SPADVHGVQLPPPPPTLAATREQRGL 54
           +P++  G Q PPPP TL A     GL
Sbjct: 97  APSEASGAQYPPPPETLGAYAGGPGL 122


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,479,033
Number of Sequences: 37866
Number of extensions: 718675
Number of successful extensions: 3681
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3641
Number of HSP's gapped (non-prelim): 50
length of query: 275
length of database: 18,247,518
effective HSP length: 101
effective length of query: 174
effective length of database: 14,423,052
effective search space: 2509611048
effective search space used: 2509611048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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