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Search of human proteins with 239743958
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743958 PREDICTED: hypothetical protein XP_002344281 [Homo
sapiens]
(268 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755193 PREDICTED: hypothetical protein [Homo sapiens] 528 e-150
gi|239749690 PREDICTED: hypothetical protein XP_002347120 [Homo ... 528 e-150
gi|239743958 PREDICTED: hypothetical protein XP_002344281 [Homo ... 528 e-150
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 39 0.005
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 39 0.005
gi|38348206 Ras and Rab interactor-like [Homo sapiens] 39 0.006
gi|4885615 signal transducer and activator of transcription 2 [H... 34 0.12
gi|116686120 periaxin isoform 2 [Homo sapiens] 33 0.20
gi|24307909 ral guanine nucleotide dissociation stimulator isofo... 33 0.26
gi|108796058 ral guanine nucleotide dissociation stimulator isof... 33 0.26
gi|239755922 PREDICTED: similar to Uncharacterized protein FLJ42... 32 0.45
gi|239750440 PREDICTED: hypothetical protein XP_002347362 [Homo ... 32 0.45
gi|239744742 PREDICTED: hypothetical protein XP_002343249 [Homo ... 32 0.45
gi|119372317 xin actin-binding repeat containing 2 isoform 1 [Ho... 32 0.45
gi|27777671 keratinocyte associated protein 3 [Homo sapiens] 32 0.45
gi|94536830 DMRT-like family C2 [Homo sapiens] 32 0.45
gi|62000702 diacylglycerol kinase kappa [Homo sapiens] 32 0.76
gi|169167057 PREDICTED: hypothetical protein [Homo sapiens] 31 1.3
gi|5231228 ribonuclease T2 precursor [Homo sapiens] 30 1.7
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 30 1.7
gi|5174469 5-hydroxytryptamine (serotonin) receptor 3B precursor... 30 1.7
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 30 1.7
gi|24497504 forkhead box A2 isoform 2 [Homo sapiens] 30 2.2
gi|239757277 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|239751780 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|239746275 PREDICTED: hypothetical protein XP_002343721 [Homo ... 30 2.2
gi|239745773 PREDICTED: hypothetical protein XP_002343550 [Homo ... 30 2.2
gi|239745771 PREDICTED: hypothetical protein XP_002343549 [Homo ... 30 2.2
gi|239745769 PREDICTED: hypothetical protein XP_002343548 [Homo ... 30 2.2
gi|5901980 heat shock transcription factor 2 binding protein [Ho... 30 2.2
>gi|239755193 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 528 bits (1361), Expect = e-150
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MMELVLELAPALEFVRELDPVLELALVPELALEPILVPQLALEPAGAPELVLELLLALNL 60
MMELVLELAPALEFVRELDPVLELALVPELALEPILVPQLALEPAGAPELVLELLLALNL
Sbjct: 1 MMELVLELAPALEFVRELDPVLELALVPELALEPILVPQLALEPAGAPELVLELLLALNL 60
Query: 61 ELVLELALAPGLEPALGWVLELVLELARALELVLELALVTELQEEKSSTTCQPFLCLSKD 120
ELVLELALAPGLEPALGWVLELVLELARALELVLELALVTELQEEKSSTTCQPFLCLSKD
Sbjct: 61 ELVLELALAPGLEPALGWVLELVLELARALELVLELALVTELQEEKSSTTCQPFLCLSKD 120
Query: 121 TEQPRLPEKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNGFRVLQLGQEKVGTALQAKPP 180
TEQPRLPEKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNGFRVLQLGQEKVGTALQAKPP
Sbjct: 121 TEQPRLPEKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNGFRVLQLGQEKVGTALQAKPP 180
Query: 181 DPSPLAGTTRGVGARVLPSQPRLRPQPHVLSHCSPPDRIRNLLDKWENCFAQGHIQERLG 240
DPSPLAGTTRGVGARVLPSQPRLRPQPHVLSHCSPPDRIRNLLDKWENCFAQGHIQERLG
Sbjct: 181 DPSPLAGTTRGVGARVLPSQPRLRPQPHVLSHCSPPDRIRNLLDKWENCFAQGHIQERLG 240
Query: 241 AESFPMGDRKIIKTSTTAPQPIPYRARR 268
AESFPMGDRKIIKTSTTAPQPIPYRARR
Sbjct: 241 AESFPMGDRKIIKTSTTAPQPIPYRARR 268
>gi|239749690 PREDICTED: hypothetical protein XP_002347120 [Homo
sapiens]
Length = 268
Score = 528 bits (1361), Expect = e-150
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MMELVLELAPALEFVRELDPVLELALVPELALEPILVPQLALEPAGAPELVLELLLALNL 60
MMELVLELAPALEFVRELDPVLELALVPELALEPILVPQLALEPAGAPELVLELLLALNL
Sbjct: 1 MMELVLELAPALEFVRELDPVLELALVPELALEPILVPQLALEPAGAPELVLELLLALNL 60
Query: 61 ELVLELALAPGLEPALGWVLELVLELARALELVLELALVTELQEEKSSTTCQPFLCLSKD 120
ELVLELALAPGLEPALGWVLELVLELARALELVLELALVTELQEEKSSTTCQPFLCLSKD
Sbjct: 61 ELVLELALAPGLEPALGWVLELVLELARALELVLELALVTELQEEKSSTTCQPFLCLSKD 120
Query: 121 TEQPRLPEKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNGFRVLQLGQEKVGTALQAKPP 180
TEQPRLPEKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNGFRVLQLGQEKVGTALQAKPP
Sbjct: 121 TEQPRLPEKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNGFRVLQLGQEKVGTALQAKPP 180
Query: 181 DPSPLAGTTRGVGARVLPSQPRLRPQPHVLSHCSPPDRIRNLLDKWENCFAQGHIQERLG 240
DPSPLAGTTRGVGARVLPSQPRLRPQPHVLSHCSPPDRIRNLLDKWENCFAQGHIQERLG
Sbjct: 181 DPSPLAGTTRGVGARVLPSQPRLRPQPHVLSHCSPPDRIRNLLDKWENCFAQGHIQERLG 240
Query: 241 AESFPMGDRKIIKTSTTAPQPIPYRARR 268
AESFPMGDRKIIKTSTTAPQPIPYRARR
Sbjct: 241 AESFPMGDRKIIKTSTTAPQPIPYRARR 268
>gi|239743958 PREDICTED: hypothetical protein XP_002344281 [Homo
sapiens]
Length = 268
Score = 528 bits (1361), Expect = e-150
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MMELVLELAPALEFVRELDPVLELALVPELALEPILVPQLALEPAGAPELVLELLLALNL 60
MMELVLELAPALEFVRELDPVLELALVPELALEPILVPQLALEPAGAPELVLELLLALNL
Sbjct: 1 MMELVLELAPALEFVRELDPVLELALVPELALEPILVPQLALEPAGAPELVLELLLALNL 60
Query: 61 ELVLELALAPGLEPALGWVLELVLELARALELVLELALVTELQEEKSSTTCQPFLCLSKD 120
ELVLELALAPGLEPALGWVLELVLELARALELVLELALVTELQEEKSSTTCQPFLCLSKD
Sbjct: 61 ELVLELALAPGLEPALGWVLELVLELARALELVLELALVTELQEEKSSTTCQPFLCLSKD 120
Query: 121 TEQPRLPEKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNGFRVLQLGQEKVGTALQAKPP 180
TEQPRLPEKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNGFRVLQLGQEKVGTALQAKPP
Sbjct: 121 TEQPRLPEKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNGFRVLQLGQEKVGTALQAKPP 180
Query: 181 DPSPLAGTTRGVGARVLPSQPRLRPQPHVLSHCSPPDRIRNLLDKWENCFAQGHIQERLG 240
DPSPLAGTTRGVGARVLPSQPRLRPQPHVLSHCSPPDRIRNLLDKWENCFAQGHIQERLG
Sbjct: 181 DPSPLAGTTRGVGARVLPSQPRLRPQPHVLSHCSPPDRIRNLLDKWENCFAQGHIQERLG 240
Query: 241 AESFPMGDRKIIKTSTTAPQPIPYRARR 268
AESFPMGDRKIIKTSTTAPQPIPYRARR
Sbjct: 241 AESFPMGDRKIIKTSTTAPQPIPYRARR 268
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 38.9 bits (89), Expect = 0.005
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 12 LEFVRELDPVLELALVPELALEPILVPQLALEPAGAPELVLELLLALNLELVLELALAPG 71
+EF+ P LEL P L P+L +PAG+ +L + L LE V +P
Sbjct: 100 MEFIESKRPRLELLPDPLLRPSPLLATG---QPAGSEDLTKDRSLTGKLEPV-----SPP 151
Query: 72 LEPALGWVLELVLELARALELVLELALVTE---LQEEKSSTTCQPFLCLSKDTEQPRLPE 128
P LELV EL+ + V + E++ S + L ++ +P PE
Sbjct: 152 SPPHTDPELELVPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPE 211
Query: 129 KPLSPNPQNVYQATLLPVV 147
KP+SP P +L+ ++
Sbjct: 212 KPVSPPPIESKHRSLVQII 230
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 38.9 bits (89), Expect = 0.005
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 12 LEFVRELDPVLELALVPELALEPILVPQLALEPAGAPELVLELLLALNLELVLELALAPG 71
+EF+ P LEL P L P+L +PAG+ +L + L LE V +P
Sbjct: 100 MEFIESKRPRLELLPDPLLRPSPLLATG---QPAGSEDLTKDRSLTGKLEPV-----SPP 151
Query: 72 LEPALGWVLELVLELARALELVLELALVTE---LQEEKSSTTCQPFLCLSKDTEQPRLPE 128
P LELV EL+ + V + E++ S + L ++ +P PE
Sbjct: 152 SPPHTDPELELVPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPE 211
Query: 129 KPLSPNPQNVYQATLLPVV 147
KP+SP P +L+ ++
Sbjct: 212 KPVSPPPIESKHRSLVQII 230
>gi|38348206 Ras and Rab interactor-like [Homo sapiens]
Length = 452
Score = 38.5 bits (88), Expect = 0.006
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 23/168 (13%)
Query: 89 ALELVLELA-LVTELQEEKSSTTCQPFLCLSKDTEQPRLPEKPLSPNPQ---NVYQATLL 144
A EL+ ++ L+T+LQ+ + + ++ + P LP+K P P V QA L
Sbjct: 185 ATELLQDVRHLLTDLQDHLAKDS---YIRAVFGSRGPGLPKKDEDPGPALETAVCQAVLA 241
Query: 145 PVVPAFLLTLRLCLNGFRVLQLGQEKVGTALQAKPPDPSPLAGTTRGVGARVLPSQPRLR 204
P+ PA LR L + +L + + A PP +G G P LR
Sbjct: 242 PLKPALWTRLR-TLRAPELRRLRRRQTALRAGAGPPG-------AQGPGPEGQSPAPALR 293
Query: 205 PQPHV-LSH----CSPPDRIRNLLDKWENCF---AQGHIQERLGAESF 244
+ H L+H C+P ++ LL+ + + A+G Q+ LGA++F
Sbjct: 294 SRIHERLAHLHAACAPRRKVALLLEVCRDVYAGLARGENQDPLGADAF 341
>gi|4885615 signal transducer and activator of transcription 2 [Homo
sapiens]
Length = 851
Score = 34.3 bits (77), Expect = 0.12
Identities = 32/74 (43%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 15 VRELDPVLELALVPELA---LEPILVPQLALEPAGAPELVLELLLALNLELVLELALAPG 71
V EL LEL PEL LE LVP+ L P L L L LE VLE L P
Sbjct: 703 VDELQQPLELKPEPELESLELELGLVPEPELSLDLEPLLKAGLDLGPELESVLESTLEPV 762
Query: 72 LEPALGWVLELVLE 85
+EP L V + V E
Sbjct: 763 IEPTLCMVSQTVPE 776
Score = 30.4 bits (67), Expect = 1.7
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 2 MELVLELAPALEFVRELDPVL--------ELALVPELALEPILVPQLALEPAGAPE 49
+EL L L P E +L+P+L EL V E LEP++ P L + PE
Sbjct: 721 LELELGLVPEPELSLDLEPLLKAGLDLGPELESVLESTLEPVIEPTLCMVSQTVPE 776
>gi|116686120 periaxin isoform 2 [Homo sapiens]
Length = 1461
Score = 33.5 bits (75), Expect = 0.20
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Query: 20 PVLELALVPELALEPILVPQLALEPAGAPELVLELLLALNLELVLELALAPGLEPALGWV 79
P +EL V E+ L VP++A+ PE+ L + + L V E+A+ P + +
Sbjct: 466 PEVELPKVSEMKLPK--VPEMAVPEVRLPEVELPKVSEMKLPKVPEMAVPEVRLPEVQLL 523
Query: 80 LELVLELARALELVLELALVTELQEEKSSTTCQPFLCLSKDTEQPRLPEKPLSPNPQNVY 139
++L + E+ + + E+Q K S P + + RLPE L P+
Sbjct: 524 KVSEMKLPKVPEMAVPEVRLPEVQLPKVSEMKLPEVS-EVAVPEVRLPEVQLPKVPEMKV 582
Query: 140 QATLLPVVPAFLL 152
LP VP L
Sbjct: 583 PEMKLPKVPEMKL 595
>gi|24307909 ral guanine nucleotide dissociation stimulator isoform
1 [Homo sapiens]
Length = 914
Score = 33.1 bits (74), Expect = 0.26
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 18/81 (22%)
Query: 20 PVLELALVPELALEPILVP--------------QLALEPAGAPELVLELLLALNLEL--- 62
P LELAL P A P+ P +L + PA APEL A+ LE
Sbjct: 271 PELELALTPARAPSPVPAPAPEPEPAPTPAPGSELEVAPAPAPELQQAPEPAVGLESAPA 330
Query: 63 -VLELALAPGLEPALGWVLEL 82
LEL AP +PA LEL
Sbjct: 331 PALELEPAPEQDPAPSQTLEL 351
>gi|108796058 ral guanine nucleotide dissociation stimulator isoform
2 [Homo sapiens]
Length = 859
Score = 33.1 bits (74), Expect = 0.26
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 18/81 (22%)
Query: 20 PVLELALVPELALEPILVP--------------QLALEPAGAPELVLELLLALNLEL--- 62
P LELAL P A P+ P +L + PA APEL A+ LE
Sbjct: 216 PELELALTPARAPSPVPAPAPEPEPAPTPAPGSELEVAPAPAPELQQAPEPAVGLESAPA 275
Query: 63 -VLELALAPGLEPALGWVLEL 82
LEL AP +PA LEL
Sbjct: 276 PALELEPAPEQDPAPSQTLEL 296
>gi|239755922 PREDICTED: similar to Uncharacterized protein FLJ42957
[Homo sapiens]
Length = 143
Score = 32.3 bits (72), Expect = 0.45
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 87 ARALELVLELALVTELQEEKSSTTCQPFLCLSKDTEQPRLPEKPLSPNPQNVYQATL 143
++AL +VL A +EK CQ + C+ K + R+P +PL P P Y +L
Sbjct: 36 SKALFMVLRRAA-----QEKDKGVCQGWHCVKKWACKGRIPGQPLQPQPLGPYLRSL 87
>gi|239750440 PREDICTED: hypothetical protein XP_002347362 [Homo
sapiens]
Length = 143
Score = 32.3 bits (72), Expect = 0.45
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 87 ARALELVLELALVTELQEEKSSTTCQPFLCLSKDTEQPRLPEKPLSPNPQNVYQATL 143
++AL +VL A +EK CQ + C+ K + R+P +PL P P Y +L
Sbjct: 36 SKALFMVLRRAA-----QEKDKGVCQGWHCVKKWACKGRIPGQPLQPQPLGPYLRSL 87
>gi|239744742 PREDICTED: hypothetical protein XP_002343249 [Homo
sapiens]
Length = 143
Score = 32.3 bits (72), Expect = 0.45
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 87 ARALELVLELALVTELQEEKSSTTCQPFLCLSKDTEQPRLPEKPLSPNPQNVYQATL 143
++AL +VL A +EK CQ + C+ K + R+P +PL P P Y +L
Sbjct: 36 SKALFMVLRRAA-----QEKDKGVCQGWHCVKKWACKGRIPGQPLQPQPLGPYLRSL 87
>gi|119372317 xin actin-binding repeat containing 2 isoform 1 [Homo
sapiens]
Length = 3549
Score = 32.3 bits (72), Expect = 0.45
Identities = 41/154 (26%), Positives = 58/154 (37%), Gaps = 20/154 (12%)
Query: 119 KDTEQPRLPEKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNGFRVLQLGQEKVGTALQAK 178
K++E P P P P P N P+ P L + NGF + L EK+ ++
Sbjct: 2283 KESECPLPPPSPPPPPPSNASSEIEFPLPPPPPLMMFPEKNGF-LPSLSTEKIKAEFESF 2341
Query: 179 P----PDPSPLAGTTRGVGARVLPSQPRLRPQ---PHVLSHCSPPDRIRNLLDKWENCFA 231
P P P + R + LP P P H+LS +P +K F
Sbjct: 2342 PGLPLPPPPVDEKSERESSSMFLPPPPPPTPSQKPAHLLSSSAP--------EKHSGDFM 2393
Query: 232 QGHIQERLGAESFPMGDRKII--KTSTTAPQPIP 263
Q + Q+ A + KII KT P +P
Sbjct: 2394 QQYSQKE--ASNSQNSQAKIITGKTGVLPPPTLP 2425
>gi|27777671 keratinocyte associated protein 3 [Homo sapiens]
Length = 240
Score = 32.3 bits (72), Expect = 0.45
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 55 LLALNLELVLELALAPGLEPALGWVL------ELVLELARALELVLELALVTELQEEKSS 108
LL++++ LV LA L P L WVL L+L +A +L L+L ++L +
Sbjct: 70 LLSVSVGLVTLLASRNLLRPPLHWVLLALALVNLLLSVACSLGLLLAVSLTVANGGRRLI 129
Query: 109 TTCQPFLC--LSKDTEQPRLPEKPLSPNPQNVYQATLLPVVPAFLLT 153
C P L L E P + P +P +Y L +P+ L++
Sbjct: 130 ADCHPGLLDPLVPLDEGPGHTDCPF--DPTRIYDTALALWIPSLLMS 174
>gi|94536830 DMRT-like family C2 [Homo sapiens]
Length = 367
Score = 32.3 bits (72), Expect = 0.45
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 32/100 (32%)
Query: 119 KDTEQPRLP--EKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNGFRVLQLGQEKVGTALQ 176
K T QP++P ++ ++P PQ + A LL P G+ G L
Sbjct: 115 KGTTQPQVPSGKENIAPQPQTPHGAVLLAPTPP-----------------GKNSCGPLLL 157
Query: 177 AKPPDPSPLAGTTRGVGARVLPSQPRLRPQPHVLSHCSPP 216
+ PP+ SPL+ T + P P V H PP
Sbjct: 158 SHPPEASPLSWTP-------------VPPGPWVPGHWLPP 184
>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
Length = 1271
Score = 31.6 bits (70), Expect = 0.76
Identities = 20/44 (45%), Positives = 21/44 (47%)
Query: 10 PALEFVRELDPVLELALVPELALEPILVPQLALEPAGAPELVLE 53
PALE V E P L + PELA EP P L P PE E
Sbjct: 129 PALESVPEPAPELTPEVAPELAPEPTPEPVTELAPEFCPEAAPE 172
>gi|169167057 PREDICTED: hypothetical protein [Homo sapiens]
Length = 320
Score = 30.8 bits (68), Expect = 1.3
Identities = 20/43 (46%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 177 AKPPDPSPLAGTTRGVGARVLPSQP------RLRPQPHVLSHC 213
A P P PLAGTT GARVL + P RP P V C
Sbjct: 194 AHPRRPRPLAGTTFCGGARVLSNPPPSGSGGDARPSPLVPRRC 236
>gi|5231228 ribonuclease T2 precursor [Homo sapiens]
Length = 256
Score = 30.4 bits (67), Expect = 1.7
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 52 LELLLALNLELVLELALAPGLEPALGW--VLELVLELARALELVLELALVTELQEEKSST 109
LEL L+L VL L G++P++ + V + LAR ++ ++ + Q+E+ T
Sbjct: 139 LELYRELDLNSVL---LKLGIKPSINYYQVADFKDALARVYGVIPKIQCLPPSQDEEVQT 195
Query: 110 TCQPFLCLSKDTEQ-PRLPEKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNG 160
Q LCL+K +Q E P+P+ Q L A LR+C +G
Sbjct: 196 IGQIELCLTKQDQQLQNCTEPGEQPSPK---QEVWLANGAAESRGLRVCEDG 244
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 30.4 bits (67), Expect = 1.7
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 169 EKVGTALQAKPPDPSPLAGTT-RGVGARVLPSQPRLRPQPHVLSHCSPPDRIRNLLDKWE 227
++ A +A PP LA R VG+ V PS P+ H HC R R L
Sbjct: 127 KRPAAAARAAPPRQRSLARCLPRSVGSCVRPSVGPSLPRRHCRRHCRCHCRRRPLP---- 182
Query: 228 NCFAQGHIQERLGAESFPMGDRKIIKTSTTAPQPIPYRARR 268
+Q RLG+ S P + + + P P R RR
Sbjct: 183 ---KPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRR 220
>gi|5174469 5-hydroxytryptamine (serotonin) receptor 3B precursor
[Homo sapiens]
Length = 441
Score = 30.4 bits (67), Expect = 1.7
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 71 GLEPALGWVLELVLELARALELVLELALVTELQEEKSSTTCQPFLCLSKDTEQPRLPEKP 130
G P +G + + L L + LV L +E+ QPFLCL DT+ R +P
Sbjct: 297 GSTPLIGHFFTICMAFL-VLSLAKSIVLVKFLHDEQRGGQEQPFLCLRGDTDADRPRVEP 355
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 30.4 bits (67), Expect = 1.7
Identities = 40/133 (30%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 37 VPQLALE----PAGAPELVLELLLALNLELVLELALAPGLEPALGWVLEL---------V 83
VPQ +E PAG PE VL L +A L L L AP EP V + V
Sbjct: 1011 VPQPKMESRGTPAGPPENVLPLSMAPPLSLGLPGHGAPQTEPTKVEVKPVPASPHPKHKV 1070
Query: 84 LELARALELVLELALVTE--LQEEKSSTTCQPFLCLSKDTEQPRLPEKPLSPNPQNVYQA 141
L ++ ++ + E EE +S +P ++ E+P LP P P+
Sbjct: 1071 SALVQSPQMKALACVSAEGVTVEEPASERLKPETQETRPREKPPLPATKAVPTPRQSTVP 1130
Query: 142 TLLPVVPAFLLTL 154
L V PA L L
Sbjct: 1131 KLPAVHPARLRKL 1143
>gi|24497504 forkhead box A2 isoform 2 [Homo sapiens]
Length = 457
Score = 30.0 bits (66), Expect = 2.2
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 166 LGQEKVGTALQAKPPDPSPLAGTTRGVGARVL--PSQPRLRPQPHV 209
LG+ K A PP+P+P G + A +L P P L P+ H+
Sbjct: 319 LGELKGTPAAALSPPEPAPSPGQQQQAAAHLLGPPHHPGLPPEAHL 364
>gi|239757277 PREDICTED: hypothetical protein [Homo sapiens]
Length = 201
Score = 30.0 bits (66), Expect = 2.2
Identities = 32/96 (33%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
Query: 124 PRLPEKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNGFRVLQLGQEKVGTALQAKPPDPS 183
P L LSP Q + T L VV + G +L G+ V L PP PS
Sbjct: 77 PALASCYLSPEGQGL--RTFLGVVATVVG------GGGSLLTWGEVLVQPRLSNSPPRPS 128
Query: 184 PLA---GTTRGVGARVLPSQPRLRPQPHVLSHCSPP 216
P G + A V PS R R P +L H PP
Sbjct: 129 PPPPPLGPPQATAAAVAPS--RARKLPSLLPHRPPP 162
>gi|239751780 PREDICTED: hypothetical protein [Homo sapiens]
Length = 201
Score = 30.0 bits (66), Expect = 2.2
Identities = 32/96 (33%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
Query: 124 PRLPEKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNGFRVLQLGQEKVGTALQAKPPDPS 183
P L LSP Q + T L VV + G +L G+ V L PP PS
Sbjct: 77 PALASCYLSPEGQGL--RTFLGVVATVVG------GGGSLLTWGEVLVQPRLSNSPPRPS 128
Query: 184 PLA---GTTRGVGARVLPSQPRLRPQPHVLSHCSPP 216
P G + A V PS R R P +L H PP
Sbjct: 129 PPPPPLGPPQATAAAVAPS--RARKLPSLLPHRPPP 162
>gi|239746275 PREDICTED: hypothetical protein XP_002343721 [Homo
sapiens]
Length = 201
Score = 30.0 bits (66), Expect = 2.2
Identities = 32/96 (33%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
Query: 124 PRLPEKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNGFRVLQLGQEKVGTALQAKPPDPS 183
P L LSP Q + T L VV + G +L G+ V L PP PS
Sbjct: 77 PALASCYLSPEGQGL--RTFLGVVATVVG------GGGSLLTWGEVLVQPRLSNSPPRPS 128
Query: 184 PLA---GTTRGVGARVLPSQPRLRPQPHVLSHCSPP 216
P G + A V PS R R P +L H PP
Sbjct: 129 PPPPPLGPPQATAAAVAPS--RARKLPSLLPHRPPP 162
>gi|239745773 PREDICTED: hypothetical protein XP_002343550 [Homo
sapiens]
Length = 323
Score = 30.0 bits (66), Expect = 2.2
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 168 QEKVGTALQAKPPDPSPLAGTTRGVGARVLPSQPRLRPQPHVLSHCSPPDRI 219
++K + + +P PSP+ + GV PRLRP L H PP R+
Sbjct: 229 EQKGPPSSRTEPRAPSPMEQASAGV--------PRLRPGRRALWHLFPPPRV 272
>gi|239745771 PREDICTED: hypothetical protein XP_002343549 [Homo
sapiens]
Length = 323
Score = 30.0 bits (66), Expect = 2.2
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 168 QEKVGTALQAKPPDPSPLAGTTRGVGARVLPSQPRLRPQPHVLSHCSPPDRI 219
++K + + +P PSP+ + GV PRLRP L H PP R+
Sbjct: 229 EQKGPPSSRTEPRAPSPMEQASAGV--------PRLRPGRRALWHLFPPPRV 272
>gi|239745769 PREDICTED: hypothetical protein XP_002343548 [Homo
sapiens]
Length = 323
Score = 30.0 bits (66), Expect = 2.2
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 168 QEKVGTALQAKPPDPSPLAGTTRGVGARVLPSQPRLRPQPHVLSHCSPPDRI 219
++K + + +P PSP+ + GV PRLRP L H PP R+
Sbjct: 229 EQKGPPSSRTEPRAPSPMEQASAGV--------PRLRPGRRALWHLFPPPRV 272
>gi|5901980 heat shock transcription factor 2 binding protein [Homo
sapiens]
Length = 334
Score = 30.0 bits (66), Expect = 2.2
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 13/97 (13%)
Query: 42 LEPAGAPELVLELLLAL-----NLELVLELALAPGLEPALGWVL-----ELVLELARALE 91
L+P +L + +L++L NL+ + ++ +PG P L W+L E+ L + R ++
Sbjct: 221 LKPGQCTKLKVLMLMSLYNVSINLKGLKYISESPGFIPLLWWLLSDPDAEVCLHVLRLVQ 280
Query: 92 -LVLELALVTELQEE-KSSTTCQPFLCLSKDTEQPRL 126
+VLE + ++ E +SS Q L +SK + PRL
Sbjct: 281 SVVLEPEVFSKSASEFRSSLPLQRILAMSK-SRNPRL 316
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,642,532
Number of Sequences: 37866
Number of extensions: 600247
Number of successful extensions: 2345
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 2201
Number of HSP's gapped (non-prelim): 88
length of query: 268
length of database: 18,247,518
effective HSP length: 100
effective length of query: 168
effective length of database: 14,460,918
effective search space: 2429434224
effective search space used: 2429434224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.