Guide to the Human Genome
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Name: KRTCAP3 Sequence: fasta or formatted (240aa) NCBI GI: 27777671
Description:

keratinocyte associated protein 3

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         23           2
 C cysteine            3.8          9           2
 D aspartate           3.8          9           1
 E glutamate           4.2         10           2
 F phenylalanine       0.8          2           1
 G glycine             8.8         21           2
 H histidine           2.5          6           1
 I isoleucine          2.5          6           1
 K lysine              1.2          3           1
 L leucine            19.6         47           3
 M methionine          1.7          4           1
 N asparagine          3.3          8           1
 P proline             5.8         14           2
 Q glutamine           2.9          7           1
 R arginine            7.5         18           2
 S serine              6.2         15           1
 T threonine           4.2         10           1
 V valine              9.2         22           1
 W tryptophan          1.2          3           1
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratinocyte associated protein 3 
TMEM54                0.227   transmembrane protein 54 
LOC100292369          0.015   PREDICTED: hypothetical protein 
LOC100290869          0.015   PREDICTED: hypothetical protein XP_002347120 
LOC100289412          0.015   PREDICTED: hypothetical protein XP_002344281 
CCKBR                 0.015   cholecystokinin B receptor 
CCR10                 0.015   CC chemokine receptor 10 
LOC440104             0.011   PREDICTED: hypothetical protein LOC440104 isoform 1...
LOC440104             0.011   PREDICTED: similar to RIKEN cDNA 1110012D08 
LOC440104             0.011   PREDICTED: hypothetical protein LOC440104 
ADCY8                 0.011   adenylate cyclase 8 
TAOK2                 0.011   TAO kinase 2 isoform 2 
RNF14                 0.011   ring finger protein 14 isoform 1 
RNF14                 0.011   ring finger protein 14 isoform 1 
RNF14                 0.011   ring finger protein 14 isoform 1 
RNF14                 0.011   ring finger protein 14 isoform 2 
RNF14                 0.011   ring finger protein 14 isoform 1 
SLC26A4               0.009   pendrin 
LOC100129323          0.009   PREDICTED: similar to pro-pol protein 
LOC100129323          0.009   PREDICTED: similar to pro-pol protein 
RPAP2                 0.009   RNA polymerase II associated protein 2 
ANKMY1                0.009   ankyrin repeat and MYND domain containing 1 isoform ...
OR5H14                0.007   olfactory receptor, family 5, subfamily H, member 14...
GPX3                  0.007   glutathione peroxidase 3 precursor 
NIPA2                 0.007   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA2                 0.007   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA2                 0.007   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA2                 0.007   non imprinted in Prader-Willi/Angelman syndrome 2 is...
MC1R                  0.007   melanocortin 1 receptor 
LOC646730             0.007   PREDICTED: similar to hCG2036631 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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