Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HTR3B Sequence: fasta or formatted (441aa) NCBI GI: 5174469
Description:

5-hydroxytryptamine (serotonin) receptor 3B precursor

Referenced in:

Serotonin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         26           2
 C cysteine            1.6          7           1
 D aspartate           5.4         24           1
 E glutamate           5.0         22           1
 F phenylalanine       5.2         23           2
 G glycine             3.6         16           2
 H histidine           2.5         11           2
 I isoleucine          5.9         26           3
 K lysine              2.9         13           2
 L leucine            12.7         56           2
 M methionine          1.8          8           1
 N asparagine          3.2         14           1
 P proline             4.5         20           2
 Q glutamine           5.7         25           2
 R arginine            4.1         18           2
 S serine              9.3         41           2
 T threonine           5.0         22           2
 V valine              9.1         40           2
 W tryptophan          2.5         11           1
 Y tyrosine            4.1         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   5-hydroxytryptamine (serotonin) receptor 3B precursor... 
HTR3A                 0.402   5-hydroxytryptamine (serotonin) receptor 3A isoform...
HTR3A                 0.402   5-hydroxytryptamine (serotonin) receptor 3A isoform...
HTR3A                 0.383   5-hydroxytryptamine (serotonin) receptor 3A isoform...
HTR3E                 0.214   5-hydroxytryptamine receptor 3 subunit E 
HTR3C                 0.201   5-hydroxytryptamine receptor 3 subunit C 
CHRNA5                0.170   cholinergic receptor, nicotinic, alpha 5 
CHRNB3                0.169   cholinergic receptor, nicotinic, beta polypeptide 3 [...
CHRNA7                0.159   cholinergic receptor, nicotinic, alpha 7 precursor [H...
CHRNA2                0.155   cholinergic receptor, nicotinic, alpha polypeptide ...
CHRNA4                0.155   cholinergic receptor, nicotinic, alpha 4 subunit prec...
CHRNA6                0.154   cholinergic receptor, nicotinic, alpha 6 
CHRNB4                0.142   cholinergic receptor, nicotinic, beta 4 
CHRNB2                0.141   neuronal nicotinic acetylcholine receptor beta 2 prec...
CHRNA3                0.141   cholinergic receptor, nicotinic, alpha 3 
CHRNA9                0.138   cholinergic receptor, nicotinic, alpha 9 precursor [...
CHRNA10               0.130   cholinergic receptor, nicotinic, alpha 10 
CHRND                 0.120   nicotinic acetylcholine receptor delta polypeptide pr...
CHRNA1                0.119   nicotinic cholinergic receptor alpha 1 isoform b prec...
CHRNE                 0.116   nicotinic acetylcholine receptor epsilon polypeptide ...
CHRNB1                0.115   nicotinic acetylcholine receptor beta 1 subunit prec...
CHRNG                 0.112   cholinergic receptor, nicotinic, gamma polypeptide p...
CHRNA1                0.104   nicotinic cholinergic receptor alpha 1 isoform a pre...
ZACN                  0.083   zinc activated ligand-gated ion channel 
CHRFAM7A              0.082   CHRNA7-FAM7A fusion isoform 1 
GABRA1                0.066   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.066   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.066   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.066   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.066   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press