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Search of human proteins with 239743940
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743940 PREDICTED: hypothetical protein XP_002342994 [Homo
sapiens]
(295 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749673 PREDICTED: hypothetical protein XP_002347141 [Homo ... 594 e-170
gi|239743940 PREDICTED: hypothetical protein XP_002342994 [Homo ... 594 e-170
gi|239755172 PREDICTED: hypothetical protein [Homo sapiens] 436 e-122
gi|150170670 piccolo isoform 2 [Homo sapiens] 41 0.001
gi|150378539 piccolo isoform 1 [Homo sapiens] 41 0.001
gi|13699803 WAS protein family, member 3 [Homo sapiens] 40 0.002
gi|157168329 formin 1 [Homo sapiens] 40 0.002
gi|24308458 Lix1 homolog (mouse) like [Homo sapiens] 40 0.002
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 40 0.003
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 40 0.003
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 40 0.003
gi|11386183 WAS protein family, member 2 [Homo sapiens] 40 0.003
gi|11415052 retinoid X receptor, beta [Homo sapiens] 39 0.004
gi|23592232 mediator complex subunit 19 [Homo sapiens] 39 0.004
gi|149999378 inverted formin 2 isoform 2 [Homo sapiens] 39 0.004
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens] 39 0.004
gi|13273315 homeobox B4 [Homo sapiens] 39 0.004
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 39 0.005
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 38 0.009
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 38 0.012
gi|39812378 RAN binding protein 9 [Homo sapiens] 38 0.012
gi|4507691 transformation/transcription domain-associated protei... 37 0.016
gi|19924103 synapsin II isoform IIa [Homo sapiens] 37 0.016
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 37 0.016
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 37 0.016
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 37 0.016
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 37 0.016
gi|19924101 synapsin II isoform IIb [Homo sapiens] 37 0.016
gi|47132519 Ras association and pleckstrin homology domains 1 is... 37 0.016
gi|24497589 aristaless related homeobox [Homo sapiens] 37 0.016
>gi|239749673 PREDICTED: hypothetical protein XP_002347141 [Homo
sapiens]
Length = 295
Score = 594 bits (1531), Expect = e-170
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MSVLLPWAYSSSDSDDIPPEADGCPTVHITLARRLALIVQDQGWVMSQARGHDNTCPITC 60
MSVLLPWAYSSSDSDDIPPEADGCPTVHITLARRLALIVQDQGWVMSQARGHDNTCPITC
Sbjct: 1 MSVLLPWAYSSSDSDDIPPEADGCPTVHITLARRLALIVQDQGWVMSQARGHDNTCPITC 60
Query: 61 TRDPLLTNLLDLSKAAQVGDPLLLYQLGGVESNAALERLRLDRRVCMLGHHVHRGHSLCV 120
TRDPLLTNLLDLSKAAQVGDPLLLYQLGGVESNAALERLRLDRRVCMLGHHVHRGHSLCV
Sbjct: 61 TRDPLLTNLLDLSKAAQVGDPLLLYQLGGVESNAALERLRLDRRVCMLGHHVHRGHSLCV 120
Query: 121 RVTVAAAAVAEGPRATGWISVVLGRLMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPV 180
RVTVAAAAVAEGPRATGWISVVLGRLMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPV
Sbjct: 121 RVTVAAAAVAEGPRATGWISVVLGRLMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPV 180
Query: 181 PGPPAPSSSVGPGASPPSTAARTWATLRRTSVLRSDHFFLTSGSSLRQVATALTLLRMPC 240
PGPPAPSSSVGPGASPPSTAARTWATLRRTSVLRSDHFFLTSGSSLRQVATALTLLRMPC
Sbjct: 181 PGPPAPSSSVGPGASPPSTAARTWATLRRTSVLRSDHFFLTSGSSLRQVATALTLLRMPC 240
Query: 241 QAALLAARGTPALKWFTSRCFFSSSSSTMISTSRSEKFIFLFLAGTAMASPLPSF 295
QAALLAARGTPALKWFTSRCFFSSSSSTMISTSRSEKFIFLFLAGTAMASPLPSF
Sbjct: 241 QAALLAARGTPALKWFTSRCFFSSSSSTMISTSRSEKFIFLFLAGTAMASPLPSF 295
>gi|239743940 PREDICTED: hypothetical protein XP_002342994 [Homo
sapiens]
Length = 295
Score = 594 bits (1531), Expect = e-170
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MSVLLPWAYSSSDSDDIPPEADGCPTVHITLARRLALIVQDQGWVMSQARGHDNTCPITC 60
MSVLLPWAYSSSDSDDIPPEADGCPTVHITLARRLALIVQDQGWVMSQARGHDNTCPITC
Sbjct: 1 MSVLLPWAYSSSDSDDIPPEADGCPTVHITLARRLALIVQDQGWVMSQARGHDNTCPITC 60
Query: 61 TRDPLLTNLLDLSKAAQVGDPLLLYQLGGVESNAALERLRLDRRVCMLGHHVHRGHSLCV 120
TRDPLLTNLLDLSKAAQVGDPLLLYQLGGVESNAALERLRLDRRVCMLGHHVHRGHSLCV
Sbjct: 61 TRDPLLTNLLDLSKAAQVGDPLLLYQLGGVESNAALERLRLDRRVCMLGHHVHRGHSLCV 120
Query: 121 RVTVAAAAVAEGPRATGWISVVLGRLMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPV 180
RVTVAAAAVAEGPRATGWISVVLGRLMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPV
Sbjct: 121 RVTVAAAAVAEGPRATGWISVVLGRLMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPV 180
Query: 181 PGPPAPSSSVGPGASPPSTAARTWATLRRTSVLRSDHFFLTSGSSLRQVATALTLLRMPC 240
PGPPAPSSSVGPGASPPSTAARTWATLRRTSVLRSDHFFLTSGSSLRQVATALTLLRMPC
Sbjct: 181 PGPPAPSSSVGPGASPPSTAARTWATLRRTSVLRSDHFFLTSGSSLRQVATALTLLRMPC 240
Query: 241 QAALLAARGTPALKWFTSRCFFSSSSSTMISTSRSEKFIFLFLAGTAMASPLPSF 295
QAALLAARGTPALKWFTSRCFFSSSSSTMISTSRSEKFIFLFLAGTAMASPLPSF
Sbjct: 241 QAALLAARGTPALKWFTSRCFFSSSSSTMISTSRSEKFIFLFLAGTAMASPLPSF 295
>gi|239755172 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 436 bits (1121), Expect = e-122
Identities = 218/218 (100%), Positives = 218/218 (100%)
Query: 78 VGDPLLLYQLGGVESNAALERLRLDRRVCMLGHHVHRGHSLCVRVTVAAAAVAEGPRATG 137
VGDPLLLYQLGGVESNAALERLRLDRRVCMLGHHVHRGHSLCVRVTVAAAAVAEGPRATG
Sbjct: 48 VGDPLLLYQLGGVESNAALERLRLDRRVCMLGHHVHRGHSLCVRVTVAAAAVAEGPRATG 107
Query: 138 WISVVLGRLMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPVPGPPAPSSSVGPGASPP 197
WISVVLGRLMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPVPGPPAPSSSVGPGASPP
Sbjct: 108 WISVVLGRLMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPVPGPPAPSSSVGPGASPP 167
Query: 198 STAARTWATLRRTSVLRSDHFFLTSGSSLRQVATALTLLRMPCQAALLAARGTPALKWFT 257
STAARTWATLRRTSVLRSDHFFLTSGSSLRQVATALTLLRMPCQAALLAARGTPALKWFT
Sbjct: 168 STAARTWATLRRTSVLRSDHFFLTSGSSLRQVATALTLLRMPCQAALLAARGTPALKWFT 227
Query: 258 SRCFFSSSSSTMISTSRSEKFIFLFLAGTAMASPLPSF 295
SRCFFSSSSSTMISTSRSEKFIFLFLAGTAMASPLPSF
Sbjct: 228 SRCFFSSSSSTMISTSRSEKFIFLFLAGTAMASPLPSF 265
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 40.8 bits (94), Expect = 0.001
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 164 SSTGATAGPPPPLPPPVPGPPAPSSSVGPGASPPSTAARTWATLRRTSVLRSDHFFLTSG 223
SS +A PPPP PPP P PP P P PP++ T ++ +V +T+
Sbjct: 2397 SSLDISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPTILPKKKLTVASP----VTTA 2452
Query: 224 SSLRQVATALTLLRMPCQAALLAARGTPALKWFTS 258
+ L T L A+L + G P + T+
Sbjct: 2453 TPLFDAVTTLE------TTAVLRSNGLPVTRICTT 2481
Score = 35.8 bits (81), Expect = 0.046
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 161 MGVSSTGATAGPPPPLPPPVPGPPAPSSSVGPG--------------ASPPSTAARTW-- 204
+ +S+ PPPP PPP P PP P P ASP +TA +
Sbjct: 2399 LDISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPTILPKKKLTVASPVTTATPLFDA 2458
Query: 205 -ATLRRTSVLRSD 216
TL T+VLRS+
Sbjct: 2459 VTTLETTAVLRSN 2471
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 40.8 bits (94), Expect = 0.001
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 164 SSTGATAGPPPPLPPPVPGPPAPSSSVGPGASPPSTAARTWATLRRTSVLRSDHFFLTSG 223
SS +A PPPP PPP P PP P P PP++ T ++ +V +T+
Sbjct: 2397 SSLDISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPTILPKKKLTVASP----VTTA 2452
Query: 224 SSLRQVATALTLLRMPCQAALLAARGTPALKWFTS 258
+ L T L A+L + G P + T+
Sbjct: 2453 TPLFDAVTTLE------TTAVLRSNGLPVTRICTT 2481
Score = 35.8 bits (81), Expect = 0.046
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 161 MGVSSTGATAGPPPPLPPPVPGPPAPSSSVGPG--------------ASPPSTAARTW-- 204
+ +S+ PPPP PPP P PP P P ASP +TA +
Sbjct: 2399 LDISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPTILPKKKLTVASPVTTATPLFDA 2458
Query: 205 -ATLRRTSVLRSD 216
TL T+VLRS+
Sbjct: 2459 VTTLETTAVLRSN 2471
>gi|13699803 WAS protein family, member 3 [Homo sapiens]
Length = 502
Score = 40.4 bits (93), Expect = 0.002
Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 165 STG--ATAGPPPPLPPPVPGPPAPSSSV--GPGASPPSTAAR 202
STG TA PPP PPP PGPP P SS+ P PP A+
Sbjct: 387 STGLLVTAPPPPGPPPPPPGPPGPGSSLSSSPMHGPPVAEAK 428
Score = 30.4 bits (67), Expect = 1.9
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 170 AGPPPPLPPPVPGPPAPSSSVGPGASP-----PSTAARTWA 205
+GPPPP PPPV P A ++ V P P P++A+ T A
Sbjct: 341 SGPPPPPPPPVI-PSAQTAFVSPLQMPMQPPFPASASSTHA 380
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 40.0 bits (92), Expect = 0.002
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 172 PPPPLPPPVPGPPAPSSSVGPGASPP 197
PPPP PPP+P PAP + GP +PP
Sbjct: 699 PPPPPPPPLPNSPAPPNPGGPPPAPP 724
Score = 39.3 bits (90), Expect = 0.004
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 169 TAGPPPPLPPPVPGPPAPSSSVGPGASPP 197
+AGPP P PPP P P P SS GP PP
Sbjct: 675 SAGPPLPPPPPPPPPLPPPSSAGPPPPPP 703
Score = 33.1 bits (74), Expect = 0.30
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 12/48 (25%)
Query: 162 GVSSTGATAGPPPP--LPPP----------VPGPPAPSSSVGPGASPP 197
G++S A PPPP +PPP P PP P S GP PP
Sbjct: 636 GMASNQQKALPPPPASIPPPPPLPSGLGSLSPAPPMPPVSAGPPLPPP 683
Score = 32.0 bits (71), Expect = 0.67
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 172 PPPPLPPPVPGPPAPSSSVGPGASPPSTAA 201
P PP+PP GPP P P PP ++A
Sbjct: 667 PAPPMPPVSAGPPLPPPPPPPPPLPPPSSA 696
Score = 28.1 bits (61), Expect = 9.6
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 171 GPPPPLPPPVPG---PPAPSSSVGPGAS 195
G PPP PPP PG PP P G G+S
Sbjct: 717 GGPPPAPPP-PGLAPPPPPGLFFGLGSS 743
>gi|24308458 Lix1 homolog (mouse) like [Homo sapiens]
Length = 337
Score = 40.0 bits (92), Expect = 0.002
Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 162 GVSSTGAT--AGPPPPLPPPVPGPPAPSSSVGPGASPPSTAARTWATLRRT--SVLRS 215
G ++ AT AGPPP PPP P PP S PG P AA + A LR +V+RS
Sbjct: 30 GAAAATATPPAGPPPAPPPPAPPPPPLLLSGAPGLPLPPGAAGSPAVLREAVEAVVRS 87
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 39.7 bits (91), Expect = 0.003
Identities = 22/48 (45%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 165 STGATAGP-PPPLPPPV------PGPPAPSSSVGPGASPPSTAARTWA 205
S GAT P PPP PPP P PP P+ GPG +PP R A
Sbjct: 13 SPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPPRAEA 60
Score = 35.8 bits (81), Expect = 0.046
Identities = 15/29 (51%), Positives = 15/29 (51%)
Query: 172 PPPPLPPPVPGPPAPSSSVGPGASPPSTA 200
PPPP PPP PGP P A PP A
Sbjct: 38 PPPPAPPPGPGPAPPQHPPRAEALPPEAA 66
Score = 31.2 bits (69), Expect = 1.1
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 173 PPPLPPPV---PGPPAPSSSVGPGASP 196
PPP P P PGPP P+S G ASP
Sbjct: 761 PPPGPAPAAASPGPPPPASPPGAPASP 787
Score = 30.4 bits (67), Expect = 1.9
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 147 MMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPVPGPPAPSSSVGPGASP 196
+ + SP RL R G + A+ GPPPP P P AP+S P SP
Sbjct: 750 LALGSP-RLVRRPPPGPAPAAASPGPPPPASP----PGAPASPRAPRTSP 794
Score = 28.9 bits (63), Expect = 5.6
Identities = 13/25 (52%), Positives = 13/25 (52%)
Query: 177 PPPVPGPPAPSSSVGPGASPPSTAA 201
PPP P P A S P ASPP A
Sbjct: 761 PPPGPAPAAASPGPPPPASPPGAPA 785
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 39.7 bits (91), Expect = 0.003
Identities = 20/45 (44%), Positives = 20/45 (44%)
Query: 163 VSSTGATAGPPPPLPPPVPGPPAPSSSVGPGASPPSTAARTWATL 207
V G A PPPP PPP PGPP P G T A A L
Sbjct: 365 VLGVGPVAPPPPPPPPPPPGPPPPPGLPSDGDHQVPTTAGNKAAL 409
Score = 35.8 bits (81), Expect = 0.046
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 171 GPPPPLPPPVPGPPAPSSSVGPGASPP 197
GPPPP PPP P P + G GA PP
Sbjct: 286 GPPPPPPPPHNSGPPPPPARGRGAPPP 312
Score = 32.3 bits (72), Expect = 0.51
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 166 TGATAGPPPPLPP-----PVPGPPAPSSSVGPGASPP 197
+ A +GPPPP P PV PP P PG PP
Sbjct: 352 SSAPSGPPPPPPSVLGVGPVAPPPPPPPPPPPGPPPP 388
Score = 31.2 bits (69), Expect = 1.1
Identities = 17/30 (56%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 172 PPPPLPPPVP-GPPAPSSSV---GPGASPP 197
PPP LP P GPP P SV GP A PP
Sbjct: 346 PPPALPSSAPSGPPPPPPSVLGVGPVAPPP 375
Score = 30.4 bits (67), Expect = 1.9
Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 14/47 (29%)
Query: 165 STGATAGPPPP--------LPPPVPG------PPAPSSSVGPGASPP 197
S TA PPPP +PPP P PPA SS G PP
Sbjct: 315 SRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPP 361
Score = 29.6 bits (65), Expect = 3.3
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 164 SSTGATAGPPPPL---PPPVP----GPPAPSSSVGPGASPP 197
S G PPPP PPP P G P P S P A+PP
Sbjct: 283 SRGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPP 323
Score = 29.3 bits (64), Expect = 4.3
Identities = 15/38 (39%), Positives = 16/38 (42%)
Query: 167 GATAGPPPPLPPPVPGPPAPSSSVGPGASPPSTAARTW 204
G A PPPP P PP P S A PP R +
Sbjct: 306 GRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMY 343
Score = 28.1 bits (61), Expect = 9.6
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 168 ATAGPPPPLPPPVPGPPAPSSSVGPGASP--PSTA 200
A PPPP P V PP P + + P P PS+A
Sbjct: 320 AAPPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSA 354
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 39.7 bits (91), Expect = 0.003
Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 151 SPSRLQIRCCMGVSSTGATAG---PPPPLPPPVPGPPAPSSSV-GPGASPP--STAARTW 204
SP + R C TG G PPPPLPPP P PP P + G SPP T W
Sbjct: 224 SPGGKRRRGCNS-EQTGLPPGLPLPPPPLPPPPPPPPPPPPPLPGLATSPPFQLTKPGLW 282
Query: 205 ATL 207
+TL
Sbjct: 283 STL 285
Score = 34.3 bits (77), Expect = 0.13
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 169 TAGPPPPLPPPVP------GPPAPSSSVGPGAS--PPSTAARTWATLRRTS 211
T GPP P PPP+P GPPA SVG S PP+ T ++ S
Sbjct: 508 TEGPPRPAPPPLPHREGFLGPPASRFSVGTQDSHTPPTPPTPTTSSSNSNS 558
Score = 30.8 bits (68), Expect = 1.5
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 172 PPPPLPPPVP--GPPAPSSSVGPGASPPSTAA 201
PPP LPPP P P PS P PPS A+
Sbjct: 771 PPPALPPPPPLAKFPPPSQPQPPPPPPPSPAS 802
Score = 29.3 bits (64), Expect = 4.3
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 146 LMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPVPGPPAPSSSVGPGASPPSTAARTWA 205
L +AS Q C G + +T P P PGPP+ G A PP++AA +
Sbjct: 804 LKSLASVLEGQKYCYRGTGAAVSTRPGPLPTTQYSPGPPS-----GATALPPTSAAPSAQ 858
Query: 206 TLRRTSVLRSDHFFLTSGSSLRQ 228
+ S S F + G R+
Sbjct: 859 GSPQPSASSSSQFSTSGGPWARE 881
Score = 29.3 bits (64), Expect = 4.3
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 167 GATAGPPPPLPPPVPGPPAPSSS-VGPGASPPSTAAR 202
GA+ PP P P P PAPS+ P AS P AR
Sbjct: 1040 GASKAKPPTAPAP-PSAPAPSAQPTPPSASVPGKKAR 1075
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 39.7 bits (91), Expect = 0.003
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 166 TGATAGPPPPLPPPVPGPPAPSSSVGPGASPP--STAARTWATLRRTSVLRSDHF-FLTS 222
TG PPPP PPP P PP + + G A PP S + ++L S RSD +
Sbjct: 387 TGGAPPPPPPPPPPGPPPPPFTGADGQPAIPPPLSDTTKPKSSLPAVSDARSDLLSAIRQ 446
Query: 223 GSSLRQV 229
G LR+V
Sbjct: 447 GFQLRRV 453
Score = 32.3 bits (72), Expect = 0.51
Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 170 AGPPPPLPPPVPG----PPAPSSSVGPGASPP 197
A PPPP PPP PP P S GA PP
Sbjct: 362 AAPPPPPPPPAADYPTLPPPPLSQPTGGAPPP 393
Score = 32.0 bits (71), Expect = 0.67
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 170 AGPPPPLPPP-----VPGPPAPSSSVGPGASPP 197
A PP P PPP +P PP P PG PP
Sbjct: 317 APPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPP 349
Score = 30.8 bits (68), Expect = 1.5
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 173 PPPLPPPVPGPPAPSSSVG-------PGASPPS 198
PPP PPP+ G P P VG P SPPS
Sbjct: 322 PPPPPPPMIGIPPPPPPVGFGSPGTPPPPSPPS 354
Score = 30.4 bits (67), Expect = 1.9
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 172 PPPPLPPPVPG-PPAPSSSVGPGASPP 197
PPPPL P G PP P PG PP
Sbjct: 379 PPPPLSQPTGGAPPPPPPPPPPGPPPP 405
Score = 29.6 bits (65), Expect = 3.3
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 167 GATAGPPPPLPPPVPGPPAPSSSVGPGASPPSTA 200
G+ PPPP PP PP P + P PP A
Sbjct: 342 GSPGTPPPPSPPSF--PPHPDFAAPPPPPPPPAA 373
Score = 28.5 bits (62), Expect = 7.4
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 164 SSTGATAGPPPPLPPPVPGPPAPSSSVGPGASPP 197
SS + + PPP PP+ PP P P +PP
Sbjct: 292 SSVVSPSHPPPA--PPLGSPPGPKPGFAPPPAPP 323
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 39.3 bits (90), Expect = 0.004
Identities = 20/35 (57%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 167 GATAGPPPPLPPPVPGPPAP--SSSVG-PGASPPS 198
G+ A PPPP+PPP G P P SSS+G PG PP+
Sbjct: 115 GSGAPPPPPMPPPPLGSPFPVISSSMGSPGLPPPA 149
Score = 33.1 bits (74), Expect = 0.30
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 171 GPPPPLPPPVPGPPAPSSSVGPGASPP 197
G PPP PP P PP+ + S+G +PP
Sbjct: 94 GVPPPSPPGPPLPPSTAPSLGGSGAPP 120
Score = 29.6 bits (65), Expect = 3.3
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 163 VSSTGATAGPPPPLPPPVPGP---PAPSSSV---GPGASPP 197
+SS+ + G PPP PP GP P +S+V G G+ PP
Sbjct: 136 ISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPP 176
Score = 28.5 bits (62), Expect = 7.4
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 162 GVSSTGATAGPPPPLPPPV-----PGPPAPSSSV----GPGASPP 197
G S + P PLP V PGPP P S+ G GA PP
Sbjct: 77 GRDSRSPDSSSPNPLPQGVPPPSPPGPPLPPSTAPSLGGSGAPPP 121
Score = 28.1 bits (61), Expect = 9.6
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 163 VSSTGATAGPPPPLPPPVPG------PPAPSSSVGPGA 194
VS G +GPP + PPV G PP P GPGA
Sbjct: 166 VSLPGGGSGPPEDVKPPVLGVRGLHCPPPPG---GPGA 200
>gi|23592232 mediator complex subunit 19 [Homo sapiens]
Length = 194
Score = 39.3 bits (90), Expect = 0.004
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 167 GATAGPPPPL------PPPVPGPPAPSSSVGPGASPPSTAA 201
GA A PPPP P P PP P + GPG +PP TAA
Sbjct: 9 GAQADPPPPPTALGFGPGKPPPPPPPPAGGGPGTAPPPTAA 49
>gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]
Length = 1240
Score = 39.3 bits (90), Expect = 0.004
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 167 GATAGPPPPLPPPVPG-----PPAPSSSVGPGASPP 197
GA A P PPLPPP+PG PP P G G PP
Sbjct: 467 GAMAPPAPPLPPPLPGSCEFLPPPPPPLPGLGCPPP 502
Score = 32.3 bits (72), Expect = 0.51
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 14/61 (22%)
Query: 146 LMMVASPSRLQIRCCMGVSSTGATAGPPPPLP-----PPVPGPPAPSSSVG----PGASP 196
++ V+ P L+ + +ST PPP LP PP P PP P SVG P A P
Sbjct: 405 ILKVSQPRALEQQ-----ASTPPPPPPPPLLPGSSAEPPPPPPPPPLPSVGAKALPTAPP 459
Query: 197 P 197
P
Sbjct: 460 P 460
Score = 31.6 bits (70), Expect = 0.87
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 172 PPPPLP----PPVPGPPAPSSSVGPGASPP 197
PPPPLP PP P P P GP PP
Sbjct: 490 PPPPLPGLGCPPPPPPLLPGMGWGPPPPPP 519
Score = 30.0 bits (66), Expect = 2.5
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
Query: 165 STGATAGPPPPLPPPVPG-----PPAP 186
S GA A P P PPP+PG PPAP
Sbjct: 448 SVGAKALPTAPPPPPLPGLGAMAPPAP 474
Score = 28.9 bits (63), Expect = 5.6
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 10/35 (28%)
Query: 172 PPPPLPPPVPG----------PPAPSSSVGPGASP 196
PPPP PPP+P PP P +G A P
Sbjct: 438 PPPPPPPPLPSVGAKALPTAPPPPPLPGLGAMAPP 472
>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
Length = 1249
Score = 39.3 bits (90), Expect = 0.004
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 167 GATAGPPPPLPPPVPG-----PPAPSSSVGPGASPP 197
GA A P PPLPPP+PG PP P G G PP
Sbjct: 467 GAMAPPAPPLPPPLPGSCEFLPPPPPPLPGLGCPPP 502
Score = 32.3 bits (72), Expect = 0.51
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 14/61 (22%)
Query: 146 LMMVASPSRLQIRCCMGVSSTGATAGPPPPLP-----PPVPGPPAPSSSVG----PGASP 196
++ V+ P L+ + +ST PPP LP PP P PP P SVG P A P
Sbjct: 405 ILKVSQPRALEQQ-----ASTPPPPPPPPLLPGSSAEPPPPPPPPPLPSVGAKALPTAPP 459
Query: 197 P 197
P
Sbjct: 460 P 460
Score = 31.6 bits (70), Expect = 0.87
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 172 PPPPLP----PPVPGPPAPSSSVGPGASPP 197
PPPPLP PP P P P GP PP
Sbjct: 490 PPPPLPGLGCPPPPPPLLPGMGWGPPPPPP 519
Score = 30.0 bits (66), Expect = 2.5
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
Query: 165 STGATAGPPPPLPPPVPG-----PPAP 186
S GA A P P PPP+PG PPAP
Sbjct: 448 SVGAKALPTAPPPPPLPGLGAMAPPAP 474
Score = 28.9 bits (63), Expect = 5.6
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 10/35 (28%)
Query: 172 PPPPLPPPVPG----------PPAPSSSVGPGASP 196
PPPP PPP+P PP P +G A P
Sbjct: 438 PPPPPPPPLPSVGAKALPTAPPPPPLPGLGAMAPP 472
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 39.3 bits (90), Expect = 0.004
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 171 GPPPPLPPPVPGPPAPSSSVGPGASPPSTA 200
GPPPP PPP P PP P S A PP+ A
Sbjct: 72 GPPPPPPPPPPPPPPPGLSPRAPAPPPAGA 101
Score = 35.0 bits (79), Expect = 0.079
Identities = 17/43 (39%), Positives = 18/43 (41%)
Query: 158 RCCMGVSSTGATAGPPPPLPPPVPGPPAPSSSVGPGASPPSTA 200
R V A P PP PPP P PP P + P A P A
Sbjct: 57 RAACTVQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPA 99
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 38.9 bits (89), Expect = 0.005
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 164 SSTGATAGPPPPLPPPVPGPPAPSSSVGPGASPPSTAARTWATLRRTS 211
S G +A PPPP PP P PP P PP+ R W RR S
Sbjct: 116 SQPGLSAPPPPPARPPPPPPPPP---------PPAPRPRAWRGSRRRS 154
Score = 28.9 bits (63), Expect = 5.6
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 154 RLQIRCCMGVSSTGATAGPPPPLPPPVPGPPAP 186
R + R G+S+ PPP PPP P PPAP
Sbjct: 111 RARSRSQPGLSAPPPPPARPPPPPPP-PPPPAP 142
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 38.1 bits (87), Expect = 0.009
Identities = 17/36 (47%), Positives = 18/36 (50%)
Query: 163 VSSTGATAGPPPPLPPPVPGPPAPSSSVGPGASPPS 198
VS+ G PP PPP PGPP P P PPS
Sbjct: 156 VSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGLPPS 191
Score = 36.6 bits (83), Expect = 0.027
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 162 GVSSTGATAGPPPPLPPPVPGPP---------APSSSVGPGASPP 197
G + A PPPP PPP PGPP P+++ G G PP
Sbjct: 161 GPPAPPAGGPPPPPGPPPPPGPPPPPGLPPSGVPAAAHGAGGGPP 205
Score = 29.6 bits (65), Expect = 3.3
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 162 GVSSTGATAGPPPPLPPPVPGPPAPSSSVGPGASPPSTAARTWATLRRTS 211
GV + AG PP PP+P P G +P AA A LR+ S
Sbjct: 192 GVPAAAHGAGGGPPPAPPLPAAQGPGG--GGAGAPGLAAAIAGAKLRKVS 239
Score = 28.5 bits (62), Expect = 7.4
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 171 GPPPPLPPPVPGPPAPSSSV--GPGASPPSTAAR 202
GPPPP P G PA + GP +PP AA+
Sbjct: 181 GPPPPPGLPPSGVPAAAHGAGGGPPPAPPLPAAQ 214
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 37.7 bits (86), Expect = 0.012
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 169 TAGPPPPLPPPVPGPPAPSSSVGPGASPPST 199
T PPP LP P PG P P+ V P PP T
Sbjct: 336 TLAPPPHLPGPPPGAPPPAPHVNPAFFPPPT 366
Score = 33.1 bits (74), Expect = 0.30
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 171 GPPPPLPPPVPGPPAPSSSVGPGASPP 197
GPPP PPP GPP P PG PP
Sbjct: 304 GPPPGPPPPQQGPPPP-----PGPFPP 325
Score = 32.0 bits (71), Expect = 0.67
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 174 PPLPPPVPGPPAPSSSVGPGASPP 197
PPL P PGPP P GP PP
Sbjct: 287 PPLGPLPPGPPPPVPGYGPPPGPP 310
Score = 31.2 bits (69), Expect = 1.1
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 16/48 (33%)
Query: 171 GPPPPLP-------PPV--PGPPAPSSSVGPG-------ASPPSTAAR 202
GPPPP P PP+ PGPP P PG A PP+ R
Sbjct: 225 GPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDR 272
Score = 29.6 bits (65), Expect = 3.3
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 167 GATAGPPPPLP-PPVPGPPAPSSSVGPGASPP 197
G G PP P PP P PP P PG PP
Sbjct: 281 GQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPP 312
Score = 29.6 bits (65), Expect = 3.3
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 163 VSSTGATAGPPPPLP-PPVPGPPAPSSSVGPGASPPSTAA 201
V G GPPPP PP P P P GP PP T A
Sbjct: 300 VPGYGPPPGPPPPQQGPPPPPGPFPPRPPGP-LGPPLTLA 338
Score = 28.1 bits (61), Expect = 9.6
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 171 GP-PPPLPPPVPGPPAPSSSVGPGASPP 197
GP PP PPPVPG P P PP
Sbjct: 290 GPLPPGPPPPVPGYGPPPGPPPPQQGPP 317
Score = 28.1 bits (61), Expect = 9.6
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 12/40 (30%)
Query: 171 GPPPPL---PPPVPGPPAPSSSVG---------PGASPPS 198
GPPPP PP PGP P ++ PGA PP+
Sbjct: 315 GPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPA 354
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 37.7 bits (86), Expect = 0.012
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 168 ATAGPPPPLPPPVPGPPAPSSSVGPGASPPS 198
ATA PPPP PP PP P+S+ P + PP+
Sbjct: 78 ATAAPPPPPPP----PPPPASAAAPASGPPA 104
Score = 33.1 bits (74), Expect = 0.30
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 165 STGATAGPPPPLPP------PVPGPPAP---SSSVGPGASPPSTA 200
+T A PPPP PP P GPPAP ++ GP P+ A
Sbjct: 78 ATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAPTPA 122
>gi|4507691 transformation/transcription domain-associated protein
[Homo sapiens]
Length = 3830
Score = 37.4 bits (85), Expect = 0.016
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 162 GVSSTGATAGPPP-----PLPPPVPGPPAPSSSVGPGASPP 197
GV + A GP P P PPP P PP P++ V P PP
Sbjct: 486 GVPTAPAAPGPAPSPAPVPAPPPPPPPPPPATPVTPAPVPP 526
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 37.4 bits (85), Expect = 0.016
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 172 PPPPLPPPVPGPPA-------PSSSVGPGASPPSTAARTWATLRRTSVLRSDHFFLTSGS 224
P P PPP PGP A P++S GP PP +A SV FF +
Sbjct: 31 PQQPPPPPPPGPGAASASAAPPTASPGPERRPPPASAPAPQPAPTPSV--GSSFFSSLSQ 88
Query: 225 SLRQVATALTLLRMPCQAALLAAR 248
+++Q A + L+ P A A +
Sbjct: 89 AVKQTAASAGLVDAPAPAPAAARK 112
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 37.4 bits (85), Expect = 0.016
Identities = 17/34 (50%), Positives = 17/34 (50%)
Query: 168 ATAGPPPPLPPPVPGPPAPSSSVGPGASPPSTAA 201
AT PPP PPP P PPAP P PS A
Sbjct: 646 ATQTAPPPPPPPPPPPPAPEQQTMPPPGSPSGGA 679
Score = 33.1 bits (74), Expect = 0.30
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 163 VSSTGATAGPPPPLPPPVPGP-----PAPSSSVGPGASPPSTAARTWATLRRTSVLR 214
+ +T PPPP PPP P P P P S G SP + + TSV++
Sbjct: 644 LQATQTAPPPPPPPPPPPPAPEQQTMPPPGSPSGGAGSPGGLGLESLSPEFFTSVVQ 700
Score = 30.4 bits (67), Expect = 1.9
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 14/79 (17%)
Query: 139 ISVVLGRLMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPVPGPPAPSSS--------- 189
+ V G M P+ G ++T TAGP P P P P PS +
Sbjct: 547 VLVAQGTPGMAPPPAPATASASAGTTNTATTAGPAPGGPAQPPPTPQPSMADLQFSQLLG 606
Query: 190 -----VGPGASPPSTAART 203
GPGA A+ T
Sbjct: 607 NLLGPAGPGAGGSGVASPT 625
Score = 28.5 bits (62), Expect = 7.4
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 146 LMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPVPGP-----PAPSS----SVGPGASP 196
L A P ++ + + ++ G P P P PGP APSS S GA P
Sbjct: 364 LQQAAIPIQINVGTTVTMTGNGTRPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPP 423
Query: 197 PSTA 200
P A
Sbjct: 424 PGPA 427
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 37.4 bits (85), Expect = 0.016
Identities = 17/34 (50%), Positives = 17/34 (50%)
Query: 168 ATAGPPPPLPPPVPGPPAPSSSVGPGASPPSTAA 201
AT PPP PPP P PPAP P PS A
Sbjct: 646 ATQTAPPPPPPPPPPPPAPEQQTMPPPGSPSGGA 679
Score = 33.1 bits (74), Expect = 0.30
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 163 VSSTGATAGPPPPLPPPVPGP-----PAPSSSVGPGASPPSTAARTWATLRRTSVLR 214
+ +T PPPP PPP P P P P S G SP + + TSV++
Sbjct: 644 LQATQTAPPPPPPPPPPPPAPEQQTMPPPGSPSGGAGSPGGLGLESLSPEFFTSVVQ 700
Score = 30.4 bits (67), Expect = 1.9
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 14/79 (17%)
Query: 139 ISVVLGRLMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPVPGPPAPSSS--------- 189
+ V G M P+ G ++T TAGP P P P P PS +
Sbjct: 547 VLVAQGTPGMAPPPAPATASASAGTTNTATTAGPAPGGPAQPPPTPQPSMADLQFSQLLG 606
Query: 190 -----VGPGASPPSTAART 203
GPGA A+ T
Sbjct: 607 NLLGPAGPGAGGSGVASPT 625
Score = 28.5 bits (62), Expect = 7.4
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 146 LMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPVPGP-----PAPSS----SVGPGASP 196
L A P ++ + + ++ G P P P PGP APSS S GA P
Sbjct: 364 LQQAAIPIQINVGTTVTMTGNGTRPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPP 423
Query: 197 PSTA 200
P A
Sbjct: 424 PGPA 427
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 37.4 bits (85), Expect = 0.016
Identities = 17/34 (50%), Positives = 17/34 (50%)
Query: 168 ATAGPPPPLPPPVPGPPAPSSSVGPGASPPSTAA 201
AT PPP PPP P PPAP P PS A
Sbjct: 646 ATQTAPPPPPPPPPPPPAPEQQTMPPPGSPSGGA 679
Score = 33.1 bits (74), Expect = 0.30
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 163 VSSTGATAGPPPPLPPPVPGP-----PAPSSSVGPGASPPSTAARTWATLRRTSVLR 214
+ +T PPPP PPP P P P P S G SP + + TSV++
Sbjct: 644 LQATQTAPPPPPPPPPPPPAPEQQTMPPPGSPSGGAGSPGGLGLESLSPEFFTSVVQ 700
Score = 30.4 bits (67), Expect = 1.9
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 14/79 (17%)
Query: 139 ISVVLGRLMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPVPGPPAPSSS--------- 189
+ V G M P+ G ++T TAGP P P P P PS +
Sbjct: 547 VLVAQGTPGMAPPPAPATASASAGTTNTATTAGPAPGGPAQPPPTPQPSMADLQFSQLLG 606
Query: 190 -----VGPGASPPSTAART 203
GPGA A+ T
Sbjct: 607 NLLGPAGPGAGGSGVASPT 625
Score = 28.5 bits (62), Expect = 7.4
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 146 LMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPVPGP-----PAPSS----SVGPGASP 196
L A P ++ + + ++ G P P P PGP APSS S GA P
Sbjct: 364 LQQAAIPIQINVGTTVTMTGNGTRPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPP 423
Query: 197 PSTA 200
P A
Sbjct: 424 PGPA 427
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 37.4 bits (85), Expect = 0.016
Identities = 17/34 (50%), Positives = 17/34 (50%)
Query: 168 ATAGPPPPLPPPVPGPPAPSSSVGPGASPPSTAA 201
AT PPP PPP P PPAP P PS A
Sbjct: 652 ATQTAPPPPPPPPPPPPAPEQQTMPPPGSPSGGA 685
Score = 33.1 bits (74), Expect = 0.30
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 163 VSSTGATAGPPPPLPPPVPGP-----PAPSSSVGPGASPPSTAARTWATLRRTSVLR 214
+ +T PPPP PPP P P P P S G SP + + TSV++
Sbjct: 650 LQATQTAPPPPPPPPPPPPAPEQQTMPPPGSPSGGAGSPGGLGLESLSPEFFTSVVQ 706
Score = 30.4 bits (67), Expect = 1.9
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 14/79 (17%)
Query: 139 ISVVLGRLMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPVPGPPAPSSS--------- 189
+ V G M P+ G ++T TAGP P P P P PS +
Sbjct: 553 VLVAQGTPGMAPPPAPATASASAGTTNTATTAGPAPGGPAQPPPTPQPSMADLQFSQLLG 612
Query: 190 -----VGPGASPPSTAART 203
GPGA A+ T
Sbjct: 613 NLLGPAGPGAGGSGVASPT 631
Score = 28.5 bits (62), Expect = 7.4
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 146 LMMVASPSRLQIRCCMGVSSTGATAGPPPPLPPPVPGP-----PAPSS----SVGPGASP 196
L A P ++ + + ++ G P P P PGP APSS S GA P
Sbjct: 370 LQQAAIPIQINVGTTVTMTGNGTRPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPP 429
Query: 197 PSTA 200
P A
Sbjct: 430 PGPA 433
>gi|19924101 synapsin II isoform IIb [Homo sapiens]
Length = 478
Score = 37.4 bits (85), Expect = 0.016
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 172 PPPPLPPPVPGPPA-------PSSSVGPGASPPSTAARTWATLRRTSVLRSDHFFLTSGS 224
P P PPP PGP A P++S GP PP +A SV FF +
Sbjct: 31 PQQPPPPPPPGPGAASASAAPPTASPGPERRPPPASAPAPQPAPTPSV--GSSFFSSLSQ 88
Query: 225 SLRQVATALTLLRMPCQAALLAAR 248
+++Q A + L+ P A A +
Sbjct: 89 AVKQTAASAGLVDAPAPAPAAARK 112
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 37.4 bits (85), Expect = 0.016
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 172 PPPPLPPPVPGPPAPSSSVGPGASPPSTAARTWATLRRTSVLRSDHFFLTSGS 224
PPPP PPP P PP P P S PS + ++ +++ R + SG+
Sbjct: 630 PPPPPPPPPPPPPPPPPPPLPSQSAPSAGSAAPMFVKYSTITRLQNASQHSGA 682
Score = 33.1 bits (74), Expect = 0.30
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 172 PPPPLPPPVPGPPAPSSSVGPGASP-PSTAA 201
P PPLPPP P PP P P P PS +A
Sbjct: 624 PSPPLPPPPPPPPPPPPPPPPPPPPLPSQSA 654
Score = 31.6 bits (70), Expect = 0.87
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 163 VSSTGATAGPPPPLPPPVPG------PPAPSSSVGPGASPP 197
V G PPPP PPP PG PAP + P S P
Sbjct: 703 VPPNGVVPPPPPPPPPPTPGSAMAQLKPAPCAPSLPQFSAP 743
Score = 31.2 bits (69), Expect = 1.1
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 166 TGATAGPPPPLPPPVPGPPAPSSSVGPGASPPSTA 200
T + PP P PPP P PP P P P +A
Sbjct: 620 TASQPSPPLPPPPPPPPPPPPPPPPPPPPLPSQSA 654
Score = 30.8 bits (68), Expect = 1.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 172 PPPPLPPPVPGPPAPSSSVGPGASPPS 198
PPPP PPP P P + + + P PS
Sbjct: 710 PPPPPPPPPPTPGSAMAQLKPAPCAPS 736
Score = 30.8 bits (68), Expect = 1.5
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 9/31 (29%)
Query: 173 PPPLPPPVPGPPAPSSSVGPGASPPSTAART 203
PPP P PVP PP P PP TA+ T
Sbjct: 928 PPPPPSPVPAPPPP---------PPPTASPT 949
Score = 30.4 bits (67), Expect = 1.9
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 170 AGPPPPLPPPVPGPPAPSSSVGPGAS-PPSTAARTWA 205
A P PP PPP+P P P + P + P T+ +T A
Sbjct: 759 APPTPPPPPPIPAPLPPQAPPKPLVTIPAPTSTKTVA 795
Score = 30.4 bits (67), Expect = 1.9
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 5/25 (20%)
Query: 172 PPPPLPPPVPGPPAPSSSVGPGASP 196
PPPP P P P PP P P ASP
Sbjct: 929 PPPPSPVPAPPPPPP-----PTASP 948
Score = 30.0 bits (66), Expect = 2.5
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 172 PPPPLPPPVPGPPAPSSSVGPGASPPSTAA 201
P PP PPP P P S PG T++
Sbjct: 936 PAPPPPPPPTASPTPDKSGSPGKKTSKTSS 965
Score = 29.6 bits (65), Expect = 3.3
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 150 ASPSRLQIRCCMGVSSTGA-TAGPPPPLPPPVPGPPAPSSSVGPGASPPST 199
A P L+I ++ T PPPP+P P+P P AP + +P ST
Sbjct: 742 APPPPLKIHQVQHITQVAPPTPPPPPPIPAPLP-PQAPPKPLVTIPAPTST 791
Score = 29.3 bits (64), Expect = 4.3
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 148 MVASPSRLQIRCCMGVSSTGATAGPPPPLPPPVPGPPAPSSSVGPGASPPS 198
+V P+ + V + A P PP+PP P P+S + P SPP+
Sbjct: 782 LVTIPAPTSTKTVAPVVTQAAPPTPTPPVPPAKKQPAFPASYIPP--SPPT 830
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 37.4 bits (85), Expect = 0.016
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 144 GRLMMVASPSRLQIRCCMGVSSTGATAGP---PPPLPPPVPGPPAPSSSVGPGASPPSTA 200
GRL+ A+ + ++T ATAGP PP PPP P G A+ + A
Sbjct: 94 GRLLQGAAAAAAAAAAAAAAAAT-ATAGPRGEAPPPPPPTARPGERPDGAGAAAAAAAAA 152
Query: 201 ARTWATLR 208
A W TL+
Sbjct: 153 AAAWDTLK 160
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,065,727
Number of Sequences: 37866
Number of extensions: 718294
Number of successful extensions: 23061
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 506
Number of HSP's that attempted gapping in prelim test: 11419
Number of HSP's gapped (non-prelim): 8377
length of query: 295
length of database: 18,247,518
effective HSP length: 102
effective length of query: 193
effective length of database: 14,385,186
effective search space: 2776340898
effective search space used: 2776340898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.