Guide to the Human Genome
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Search of human proteins with 239743776

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743776 PREDICTED: hypothetical protein XP_002344295 [Homo
sapiens]
         (109 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239743776 PREDICTED: hypothetical protein XP_002344295 [Homo ...   231   1e-61
gi|5031669 cyclin-dependent kinase 2 associated protein 2 [Homo ...   186   3e-48
gi|4758188 CDK2-associated protein  1 [Homo sapiens]                   80   3e-16
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho...    41   2e-04
gi|21071077 dishevelled-associated activator of morphogenesis 1 ...    40   5e-04
gi|116284392 mucin 2 precursor [Homo sapiens]                          39   9e-04
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]              39   9e-04
gi|46560555 transmembrane protein 132E [Homo sapiens]                  37   0.003
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]          36   0.006
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]          36   0.006
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]          36   0.006
gi|157168329 formin 1 [Homo sapiens]                                   36   0.008
gi|119829187 alpha 1 type XVII collagen [Homo sapiens]                 36   0.008
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]            35   0.010
gi|83367077 mucin 16 [Homo sapiens]                                    35   0.013
gi|39930511 collagen and calcium binding EGF domains 1 [Homo sap...    35   0.013
gi|163965366 nascent polypeptide-associated complex alpha subuni...    35   0.013
gi|169171626 PREDICTED: hypothetical protein [Homo sapiens]            35   0.017
gi|89026075 PREDICTED: hypothetical protein [Homo sapiens]             35   0.017
gi|89025126 PREDICTED: hypothetical protein [Homo sapiens]             35   0.017
gi|239508901 PREDICTED: hypothetical protein [Homo sapiens]            35   0.017
gi|24497609 nucleoporin 62kDa [Homo sapiens]                           35   0.017
gi|24497607 nucleoporin 62kDa [Homo sapiens]                           35   0.017
gi|24497605 nucleoporin 62kDa [Homo sapiens]                           35   0.017
gi|24497603 nucleoporin 62kDa [Homo sapiens]                           35   0.017
gi|31543543 retinoic acid induced 17 [Homo sapiens]                    35   0.017
gi|23592232 mediator complex subunit 19 [Homo sapiens]                 34   0.022
gi|41281612 zinc finger protein 828 [Homo sapiens]                     34   0.022
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      34   0.029
gi|150417978 platelet glycoprotein Ib alpha polypeptide precurso...    34   0.029

>gi|239743776 PREDICTED: hypothetical protein XP_002344295 [Homo
           sapiens]
          Length = 109

 Score =  231 bits (588), Expect = 1e-61
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   MSYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQ 60
           MSYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQ
Sbjct: 1   MSYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQ 60

Query: 61  AMKPPGAQGSQSTYTELLLVTGEMGKGIRPTYAGSKSAAERLKRGIIHP 109
           AMKPPGAQGSQSTYTELLLVTGEMGKGIRPTYAGSKSAAERLKRGIIHP
Sbjct: 61  AMKPPGAQGSQSTYTELLLVTGEMGKGIRPTYAGSKSAAERLKRGIIHP 109


>gi|5031669 cyclin-dependent kinase 2 associated protein 2 [Homo
           sapiens]
          Length = 126

 Score =  186 bits (472), Expect = 3e-48
 Identities = 91/108 (84%), Positives = 95/108 (87%)

Query: 1   MSYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQ 60
           MSYKP  PAPSSTPG STPGPGTPVPTGSVPSPSGS PGA AP RPLF DFGPP++G +Q
Sbjct: 1   MSYKPIAPAPSSTPGSSTPGPGTPVPTGSVPSPSGSVPGAGAPFRPLFNDFGPPSMGYVQ 60

Query: 61  AMKPPGAQGSQSTYTELLLVTGEMGKGIRPTYAGSKSAAERLKRGIIH 108
           AMKPPGAQGSQSTYT+LL V  EMGK IRPTYAGSKSA ERLKRGIIH
Sbjct: 61  AMKPPGAQGSQSTYTDLLSVIEEMGKEIRPTYAGSKSAMERLKRGIIH 108


>gi|4758188 CDK2-associated protein  1 [Homo sapiens]
          Length = 115

 Score = 80.5 bits (197), Expect = 3e-16
 Identities = 51/108 (47%), Positives = 60/108 (55%), Gaps = 11/108 (10%)

Query: 1   MSYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQ 60
           MSYKP   A       +          GSV SPS S    ++  R L  D+GPP++G  Q
Sbjct: 1   MSYKPNLAAHMPAAALNA--------AGSVHSPSTS-MATSSQYRQLLSDYGPPSLGYTQ 51

Query: 61  AMKPPGAQGSQSTYTELLLVTGEMGKGIRPTYAGSKSAAERLKRGIIH 108
                 +Q  QS Y ELL +  E+GK IRPTYAGSKSA ERLKRGIIH
Sbjct: 52  GTG--NSQVPQSKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIH 97


>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
           sapiens]
          Length = 245

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 28/79 (35%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 2   SYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATA-------PCRPLFKDFGPP 54
           S  PT P P     F   GP  P P G  P+P+  GPG T        P   L + +G P
Sbjct: 74  SVPPTGPPPGPPAPFPPSGPSCPPPGGPYPAPTVPGPGPTGPYPTPNMPFPELPRPYGAP 133

Query: 55  TVGCMQAMKPPGAQGSQST 73
           T     A  P G  GS S+
Sbjct: 134 TDPA--AAGPLGPWGSMSS 150



 Score = 35.0 bits (79), Expect = 0.013
 Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 5  PTTPA--PSSTPGFSTPG--PGTPVPTGSVPS--PSGSGPGATAPCRPLFKDFGPP 54
          P+ P+  PS  P  +TP   P  P PTG  PS  P+G  PG  AP  P      PP
Sbjct: 43 PSAPSSVPSGLPPSATPSTVPFGPAPTGMYPSVPPTGPPPGPPAPFPPSGPSCPPP 98



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 5   PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKP 64
           P  P  S + G   PG G   PT ++P PS  GP   AP  P      PP         P
Sbjct: 141 PLGPWGSMSSGPWAPGMGGQYPTPNMPYPS-PGP-YPAPPPPQAPGAAPPV---PWGTVP 195

Query: 65  PGAQGSQSTY 74
           PGA G  + Y
Sbjct: 196 PGAWGPPAPY 205



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 17/70 (24%)

Query: 9  APSSTPGFSTPGPGTPVPTG----------SVPS--PSGSGPGATAPCRPLFKDFGPPTV 56
          +P+ T   S   PG P P G          S PS  PSG  P AT    P    FGP   
Sbjct: 15 SPAKTSAVSNTKPGQP-PQGWPGSNPWNNPSAPSSVPSGLPPSATPSTVP----FGPAPT 69

Query: 57 GCMQAMKPPG 66
          G   ++ P G
Sbjct: 70 GMYPSVPPTG 79



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 6/37 (16%)

Query: 8   PAPSSTPGFSTPGPGTPVPTGS------VPSPSGSGP 38
           P P   PG + P P   VP G+       P+P+GS P
Sbjct: 177 PPPPQAPGAAPPVPWGTVPPGAWGPPAPYPAPTGSYP 213



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 2   SYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAP 43
           ++ P  P P+ T  + TPG     PT S P    SGP    P
Sbjct: 198 AWGPPAPYPAPTGSYPTPG---LYPTPSNPFQVPSGPSGAPP 236



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 5   PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCR-PLFKDFGPPTVG 57
           P  P  +  PG   P    P PTGS P+P G  P  + P + P      PP  G
Sbjct: 187 PPVPWGTVPPGAWGPPAPYPAPTGSYPTP-GLYPTPSNPFQVPSGPSGAPPMPG 239


>gi|21071077 dishevelled-associated activator of morphogenesis 1
           [Homo sapiens]
          Length = 1078

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 5   PTTPAPSSTPG-FSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMK 63
           P  P PSS PG    P P  P+P G +P P    P    P  P     GPP +G +  M 
Sbjct: 536 PGGPFPSSVPGSLLPPPPPPPLPGGMLPPPPPPLPPGGPPPPP-----GPPPLGAI--MP 588

Query: 64  PPGA 67
           PPGA
Sbjct: 589 PPGA 592



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 8   PAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPG 39
           P P   PG   P PG P P G++  P G+  G
Sbjct: 565 PPPPLPPGGPPPPPG-PPPLGAIMPPPGAPMG 595


>gi|116284392 mucin 2 precursor [Homo sapiens]
          Length = 5179

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 8/50 (16%)

Query: 5    PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPP 54
            P+TP+P+ TP  STP P  P  T S P+P G+ P       P   DF PP
Sbjct: 4377 PSTPSPTPTPSKSTPTPSKPSSTPSKPTP-GTKP-------PECPDFDPP 4418



 Score = 33.9 bits (76), Expect = 0.029
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 6    TTPAPSSTPGFSTPGPGTPVPTGSVPSP----SGSGPGATAPCRPLFKDFGPPTVGCMQA 61
            TTP+P +T   + P   T +P  + PSP    + + P  T P  P      PPT+     
Sbjct: 1537 TTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTI--TTT 1594

Query: 62   MKPPGAQGSQSTYT 75
              PP    S  T T
Sbjct: 1595 TPPPTTTPSPPTTT 1608



 Score = 33.5 bits (75), Expect = 0.038
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 6    TTPAPSSTPGFSTPGPGTPVPTGSVPSP----SGSGPGATAPCRPLFKDFGPPT 55
            TTP+P +T   + P   T +P  + PSP    + + P  T P  P      PPT
Sbjct: 1498 TTPSPPTTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPT 1551



 Score = 32.3 bits (72), Expect = 0.084
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 6    TTPAPSSTPGFSTPGPGTPVPTGSVP-SPSGSGPGATAPCRPLFKDFGPP 54
            TTP P++TP   T  P  P  T S P + + + P  T P  P      PP
Sbjct: 1462 TTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPP 1511



 Score = 31.2 bits (69), Expect = 0.19
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 6    TTPAPSSTPG---FSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPT 55
            TTP P++TP     +TP P T   T   P+ + S P  T    P      PPT
Sbjct: 1570 TTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPT 1622



 Score = 31.2 bits (69), Expect = 0.19
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 6    TTPAPSSTPG---FSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAM 62
            TTP P++TP     +TP P  P+ T + P P+      T P  P+     PPT   M   
Sbjct: 1649 TTPPPTTTPSPPTTTTPSP--PITTTTTPPPT------TTPSSPITTTPSPPTT-TMTTP 1699

Query: 63   KPPGAQGSQSTYT 75
             P     S  T T
Sbjct: 1700 SPTTTPSSPITTT 1712



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 5    PTTPAPSST--PGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPP 54
            P TP  S+T  P  +TP P     T   P+ + S P  T P  P+     PP
Sbjct: 1625 PITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPP 1676



 Score = 30.0 bits (66), Expect = 0.42
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 6    TTPAPSST---PGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPT 55
            TTP+P +T   P  +TP P T   T   P+ + S P  T    P      PPT
Sbjct: 1468 TTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPASTTTLPPT 1520



 Score = 30.0 bits (66), Expect = 0.42
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 6    TTPAPSSTPGFSTPGPGTPVPTGSVPSP----SGSGPGATAPCRPLFKDFGPP 54
            TTP+P +T   + P   T +P  + PSP    + + P  T P  P      PP
Sbjct: 1616 TTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPP 1668



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 6    TTPAPSSTPGFSTPGPGTPVPTGSVPSP----SGSGPGATAPCRPLFKDFGPP 54
            TTP+P +T     P   T +P  + PSP    + + P  T P  P+     PP
Sbjct: 1397 TTPSPPTTTPSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPP 1449



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 13/82 (15%)

Query: 6    TTPAPSSTPG-----FSTPGPGT----PVPTGSVPSPSGS-GPGATAPCRPLFKDFGPPT 55
            TTP P++TP       +TP P T    P+ T + P P+ +  P  T P  P      PPT
Sbjct: 1430 TTPPPTTTPSPPITTTTTPPPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTP-SPPT 1488

Query: 56   VGCMQAMKPPGAQGSQSTYTEL 77
                    PP    S  T T +
Sbjct: 1489 T--TTTTPPPTTTPSPPTTTPI 1508



 Score = 28.9 bits (63), Expect = 0.93
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 5    PTTPAPSST--PGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPT 55
            P TP  S+T  P  +TP P T   T   P+ + S P  T    P      PPT
Sbjct: 1507 PITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPT 1559



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 9/75 (12%)

Query: 6    TTPAPSST-----PGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQ 60
            TTP+P +T     P  +TP P     T   P+ + S P +T    P      PPT     
Sbjct: 1420 TTPSPPTTTTTTPPPTTTPSPPITTTTTPPPTTTPSPPISTTTTPPPTTTPSPPTT---- 1475

Query: 61   AMKPPGAQGSQSTYT 75
               PP    S  T T
Sbjct: 1476 TPSPPTTTPSPPTTT 1490



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 6    TTPAPSST-----PGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPP 54
            TTP+P +T     P  +TP P T  P  + P+ + + P  T P  P      PP
Sbjct: 1482 TTPSPPTTTTTTPPPTTTPSPPTTTPI-TPPASTTTLPPTTTPSPPTTTTTTPP 1534



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 5    PTTPAPSSTPGFSTPGPGTPVPTGSVPSP--SGSGPGATAPCRPLFKDFGPP 54
            P TP  S+T    T  P  P  T + P P  + S P  T P  P      PP
Sbjct: 1546 PITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPP 1597



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 6    TTPAP-----SSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPT 55
            TTP+P     ++ P  +TP P T   T   P+ + S P  T    P      PPT
Sbjct: 1584 TTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPT 1638



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 18/84 (21%)

Query: 6    TTPAPSST-----PGFSTPGPG-----TPVPTGSVPSP----SGSGPGATAPCRPLFKDF 51
            TTP+P  T     P  +TP P      TP PT + PSP    + + P  T P  P+    
Sbjct: 1404 TTPSPPPTSTTTLPPTTTPSPPTTTTTTPPPT-TTPSPPITTTTTPPPTTTPSPPISTTT 1462

Query: 52   GPPTVGCMQAMKPPGAQGSQSTYT 75
             PP         PP    S  T T
Sbjct: 1463 TPPPT---TTPSPPTTTPSPPTTT 1483



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 6    TTPAPSST-----PGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPP 54
            TTP+P +T     P  +TP P T  P  + P+ + + P  T P  P      PP
Sbjct: 1600 TTPSPPTTTTTTPPPTTTPSPPTTTPI-TPPTSTTTLPPTTTPSPPPTTTTTPP 1652



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 6    TTPAPSSTPGFSTPGPGTPVPTGS----VPSPSGSGPG-----ATAPCRPLFKDFGPPTV 56
            TT  P+ TP  +     TP+ T +     P+P+G+  G     +TAP   L     PP  
Sbjct: 4159 TTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTGPPTHTSTAPIAELTTSNPPPES 4218

Query: 57   GCMQAMKPPGAQGSQST 73
               Q  +   +  ++ST
Sbjct: 4219 STPQTSRSTSSPLTEST 4235



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 13/58 (22%)

Query: 6    TTPAPSST-----PGFSTPGPGTPVPTGSVPSP----SGSGPGATAPCRPLFKDFGPP 54
            TTP+P  T     P  +TP P    PT + PSP    + + P  T P  P      PP
Sbjct: 1560 TTPSPPPTTTTTPPPTTTPSP----PTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPP 1613



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 6    TTPAPSSTPGFSTPGPGT----PVPTGSVPSPSGS-GPGATAPCRPLFKDFGPPTVGCMQ 60
            TTP+P +T   +TP P T    P+ T + PS + +  P  T    P       P    M 
Sbjct: 1687 TTPSPPTTT-MTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMT 1745

Query: 61   AMKPPGAQGSQSTYTEL 77
             + PP    S  T T L
Sbjct: 1746 TL-PPTTTSSPLTTTPL 1761



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 9/70 (12%)

Query: 6    TTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGA---------TAPCRPLFKDFGPPTV 56
            TTP+P +T   + P   T  P  + P P    P           T PC PL    G    
Sbjct: 1735 TTPSPPTTTMTTLPPTTTSSPLTTTPLPPSITPPTFSPFSTTTPTTPCVPLCNWTGWLDS 1794

Query: 57   GCMQAMKPPG 66
            G     KP G
Sbjct: 1795 GKPNFHKPGG 1804



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 7    TPAPSST---PGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMK 63
            +P PS+T   PG  TP  GT   + S P+PS      T+   P       P++     ++
Sbjct: 4269 SPPPSTTTSPPG--TPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTPLSTPSIIRTTGLR 4326

Query: 64   P 64
            P
Sbjct: 4327 P 4327


>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
          Length = 2639

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 8/50 (16%)

Query: 5    PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPP 54
            P+TP+P+ TP  STP P  P  T S P+P G+ P       P   DF PP
Sbjct: 1837 PSTPSPTPTPSKSTPTPSKPSSTPSKPTP-GTKP-------PECPDFDPP 1878



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 6    TTPAPSSTP-GFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKP 64
            TT  P+ TP G  TP P TP+ T +  +P+ +  G   P          P          
Sbjct: 1527 TTVTPTPTPTGTQTPTP-TPISTTTTVTPTPTPTGTQTPTT-------TPITTTTTVTPT 1578

Query: 65   PGAQGSQSTYTELLLVTGEMGKGIRPT 91
            P   G+Q+  T L+  T  M     PT
Sbjct: 1579 PTPTGTQTPTTVLITTTTTMTPTPTPT 1605



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 13/55 (23%)

Query: 2    SYKPTTPAPSSTPGFSTPGP---GTPVPTGS----------VPSPSGSGPGATAP 43
            S + TTP P +T    TP P   GT  PT +           P+P+G+    T P
Sbjct: 1330 STQSTTPTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTP 1384



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 6    TTPAPSSTPGFSTPGPGTPVPTGS----VPSPSGSGPGATAPCRPLFKDFGPPTVGCMQA 61
            TT  P+ TP  +     TP+ T +     P+P+G+    T P          PT    QA
Sbjct: 1389 TTVTPTPTPTGTQTPTSTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQA 1448

Query: 62   MKPPGAQGSQSTYTELLLVTG 82
               P A  + ST T     TG
Sbjct: 1449 -PTPTAITTTSTVTPTPTPTG 1468



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 7    TPAPSST---PGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMK 63
            +P PS+T   PG  TP  GT   + S P+PS      T+   P       P++     ++
Sbjct: 1729 SPPPSTTTSPPG--TPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTPLSTPSIIRTTGLR 1786

Query: 64   P 64
            P
Sbjct: 1787 P 1787


>gi|46560555 transmembrane protein 132E [Homo sapiens]
          Length = 984

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 8/55 (14%)

Query: 14  PGFSTPGPG--------TPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQ 60
           PG S PGPG           P  ++P+P   GPG  +P  P  +DF P   G +Q
Sbjct: 735 PGPSQPGPGGGEDEARGAGPPGSALPAPEAPGPGTASPVVPPTEDFLPLPTGFLQ 789


>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
          Length = 1012

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 7   TPAPSS----TPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQA- 61
           TPAPSS    TP   TPGP    P+ +   P GS   + AP +P       P     QA 
Sbjct: 194 TPAPSSAPPGTPQLPTPGP---TPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAP 250

Query: 62  ----MKPPGAQ--GSQSTYTELLLVTGEMGKGIRPTYA 93
                +PP        S +  L  +TG  G+   P++A
Sbjct: 251 ALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHA 288


>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 7   TPAPSS----TPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQA- 61
           TPAPSS    TP   TPGP    P+ +   P GS   + AP +P       P     QA 
Sbjct: 748 TPAPSSAPPGTPQLPTPGP---TPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAP 804

Query: 62  ----MKPPGAQ--GSQSTYTELLLVTGEMGKGIRPTYA 93
                +PP        S +  L  +TG  G+   P++A
Sbjct: 805 ALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHA 842


>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 7   TPAPSS----TPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQA- 61
           TPAPSS    TP   TPGP    P+ +   P GS   + AP +P       P     QA 
Sbjct: 748 TPAPSSAPPGTPQLPTPGP---TPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAP 804

Query: 62  ----MKPPGAQ--GSQSTYTELLLVTGEMGKGIRPTYA 93
                +PP        S +  L  +TG  G+   P++A
Sbjct: 805 ALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHA 842


>gi|157168329 formin 1 [Homo sapiens]
          Length = 1196

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 2   SYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQA 61
           S  P  P P  + G   P P  P P   +P PS +GP    P  PL     PP  G    
Sbjct: 664 SLSPAPPMPPVSAGPPLPPPPPPPPP--LPPPSSAGPPPPPPPPPLPNSPAPPNPGGPPP 721

Query: 62  MKPP 65
             PP
Sbjct: 722 APPP 725



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 5   PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPP 54
           P  P PSS      P P  P P  + P+P   G    AP  P      PP
Sbjct: 688 PPLPPPSSA---GPPPPPPPPPLPNSPAPPNPGGPPPAPPPPGLAPPPPP 734


>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
          Length = 1497

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 32/92 (34%), Positives = 36/92 (39%), Gaps = 6/92 (6%)

Query: 8   PAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTV-GCMQAMKPPG 66
           P P   PG     PG+  P GS  SP   GP      + L  + G P V G    M PPG
Sbjct: 652 PGPHGPPGV----PGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPG 707

Query: 67  AQGSQSTYTELLLVTGEMGKGIRPTYAGSKSA 98
            +G Q       L TGE G    P   G   A
Sbjct: 708 PKGDQGEKGPRGL-TGEPGMRGLPGAVGEPGA 738



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 5   PTTPAPSSTPGFSTPGPGTP--VPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAM 62
           P  P P   PG S PGP  P   P   +P P G  PG+       F    P   G     
Sbjct: 859 PGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGP-PGSFLSNSETFLSGPPGPPG----- 912

Query: 63  KPPGAQGSQ 71
            PPG +G Q
Sbjct: 913 -PPGPKGDQ 920


>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 251

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 27/92 (29%)

Query: 5   PTTPAPSSTPGFSTPGPG-----TPVP-TGSVPSPSGSGPGATAPCRPLFKDFGPPTVGC 58
           P TPA S  P    P P      +PVP  G+VPSP    P A  P RP  +   P     
Sbjct: 32  PATPARSPRPPLCAPRPAPGRAQSPVPAAGAVPSP----PAAAHPARPALRGETP----- 82

Query: 59  MQAMKPPGAQGSQSTYTELLLVTGEMGKGIRP 90
                 PG +G  +T        GE+   +RP
Sbjct: 83  -----APGRRGRATT-------RGEVQPSVRP 102


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 9     APSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKPPGAQ 68
             AP+STPG ST   GT     S+PSP+ + P       P   +F    +   + M+ PG++
Sbjct: 12979 APTSTPGTSTVDLGTSGTPSSLPSPTTAVPLLV----PFTLNFTITNLQYGEDMRHPGSR 13034

Query: 69    GSQSTYTELLLVTGEMGK--GIRPTYAGSKSAAERLKR 104
                +T   L  + G + K   + P Y+G +  + R ++
Sbjct: 13035 KFNTTERVLQGLLGPLFKNSSVGPLYSGCRLISLRSEK 13072



 Score = 32.7 bits (73), Expect = 0.064
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 7     TPAPS-STPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKPP 65
             T AP+ STPG ST   GT     S+PSP+ +GP       P   +F    +   + M  P
Sbjct: 12820 TSAPNTSTPGTSTVDLGTSGTPSSLPSPTSAGPLLV----PFTLNFTITNLQYEEDMHHP 12875

Query: 66    GAQGSQSTYTELLLVTGEMGK 86
             G++   +T   L  + G M K
Sbjct: 12876 GSRKFNTTERVLQGLLGPMFK 12896



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 6     TTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGP 38
             T+   SSTPG ST   GT     S+PSP+ +GP
Sbjct: 12509 TSVPTSSTPGTSTVDLGTSGTPFSLPSPATAGP 12541



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 4/37 (10%)

Query: 2     SYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGP 38
             S  PTT    STPG ST   GT     S PSP+ +GP
Sbjct: 12195 SSMPTT----STPGTSTVDVGTSGTPSSSPSPTTAGP 12227



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 11    SSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAP-CRPLFKDFGPPTVGCMQAMKPPGAQG 69
             SS P  STPG  T  P  S    S  GP AT P   P   +F    +   + M+ PG++ 
Sbjct: 13288 SSVPTTSTPGTFTVQPETSETPSSLPGPTATGPVLLPFTLNFTITNLQYEEDMRRPGSRK 13347

Query: 70    SQST 73
               +T
Sbjct: 13348 FNTT 13351



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 18/59 (30%)

Query: 5     PTTPAPSSTPGFST------------------PGPGTPVPTGSVPSPSGSGPGATAPCR 45
             PTT  P S PG  T                  P PG P  T S  +  G+  G T P R
Sbjct: 11619 PTTTIPPSIPGVVTSQVTSSATDTSTAIPTLTPSPGEPETTASSATHPGTQTGFTVPIR 11677



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 20/98 (20%)

Query: 8     PAPSSTPGFSTP-------GPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQ 60
             P P+S    STP       G GTP    S+PSP+ +GP       P   +F    +   +
Sbjct: 12666 PVPTS----STPGTSTVDLGSGTP---SSLPSPTTAGPLLV----PFTLNFTITNLKYEE 12714

Query: 61    AMKPPGAQGSQSTYTELLLVTGEMGK--GIRPTYAGSK 96
              M  PG++   +T   L  + G M K   + P Y+G +
Sbjct: 12715 DMHCPGSRKFNTTERVLQSLLGPMFKNTSVGPLYSGCR 12752



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 11    SSTPGFSTPGPGTPVPTGSVPSP-SGSGPGATAPCRPLFK-DFGPPTVGCMQAMKPPGAQ 68
             SS P  S PG  T V  G+  +P S  GP A +P   LF  +F    +   + M+ PG++
Sbjct: 13600 SSVPTTSIPGTPT-VDLGTSGTPVSKPGPSAASPLLVLFTLNFTITNLRYEENMQHPGSR 13658

Query: 69    GSQSTYTEL--LLVTGEMGKGIRPTYAGSK 96
                +T   L  LL +      + P Y+G +
Sbjct: 13659 KFNTTERVLQGLLRSLFKSTSVGPLYSGCR 13688



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 11    SSTPGFSTPGPGTPVPTGSVPSPSGSGP 38
             +STP  ST   GT      VPSP+ +GP
Sbjct: 13137 TSTPWTSTVDLGTSGTPSPVPSPTTTGP 13164


>gi|39930511 collagen and calcium binding EGF domains 1 [Homo
           sapiens]
          Length = 406

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 18/97 (18%)

Query: 5   PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGS-GPGATAPCRPLFKD-----FGPP---- 54
           P +P P  +PGF    PG P P G  P P GS GP   +P     K       GPP    
Sbjct: 258 PGSPGPKGSPGF----PGMPGPPGQ-PGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPG 312

Query: 55  ---TVGCMQAMKPPGAQGSQSTYTELLLVTGEMGKGI 88
              + G   A  P G+ G   ++  LLL+  ++   I
Sbjct: 313 RDGSKGERGAPGPRGSPGPPGSFDFLLLMLADIRNDI 349



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 9/76 (11%)

Query: 8   PAPSSTPGFSTPGPGTPVPTGS-----VPSPSGS-GP-GATAPCRPLFKDFGPPTVGCMQ 60
           P P   PG   P PG+P P GS     +P P G  GP G+  P  P   D      G   
Sbjct: 246 PGPPGLPGGQGP-PGSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGP-SPDLSHIKQGRRG 303

Query: 61  AMKPPGAQGSQSTYTE 76
            + PPGA G   +  E
Sbjct: 304 PVGPPGAPGRDGSKGE 319


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 26/75 (34%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 5    PTTPA---PSSTPGFSTPGPG---------TPVPTGSVPSPSGSGPGATAPCRPLFKDFG 52
            PTTPA   PS   G +TP P           P P G + +PS  G   T    P     G
Sbjct: 1195 PTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGG 1254

Query: 53   PPTVGCMQAMKPPGA 67
            P T     A  PP A
Sbjct: 1255 PATPPPKGAPTPPAA 1269



 Score = 34.7 bits (78), Expect = 0.017
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 13/74 (17%)

Query: 5    PTTPAP--SSTPGFSTP-----GPGTPVPTGSVPSPSGSGPGAT-APCRPLFKDFGPPTV 56
            P TP+P  + TP  +TP     GP TP P G+   P+ + P     P  P  K  G PT 
Sbjct: 954  PATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPK--GAPT- 1010

Query: 57   GCMQAMKPPGAQGS 70
                A+ PP  +GS
Sbjct: 1011 --PPAVTPPSPKGS 1022



 Score = 34.3 bits (77), Expect = 0.022
 Identities = 23/69 (33%), Positives = 23/69 (33%), Gaps = 6/69 (8%)

Query: 5   PTTPAPSSTPGFSTPGPG------TPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGC 58
           P TPAP   P  S           TP P G   SPS  G        P     GP T   
Sbjct: 900 PATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSP 959

Query: 59  MQAMKPPGA 67
             A  PP A
Sbjct: 960 KWAPTPPAA 968



 Score = 32.3 bits (72), Expect = 0.084
 Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 24/80 (30%)

Query: 5    PTTPAPSS--TPGFSTP-----GPGTPVPTG-------SVPSPSGSGPGATAPCRPLFKD 50
            P TP+P    TP  +TP     GP TP P G       + PSP GS P AT    P  K 
Sbjct: 977  PATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGS-PAAT----PFPKG 1031

Query: 51   FGPPTVGCMQAMKPPGAQGS 70
               P      A  PP  +GS
Sbjct: 1032 ASTP-----PAATPPSPKGS 1046



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 31/91 (34%), Positives = 35/91 (38%), Gaps = 17/91 (18%)

Query: 6    TTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKPP 65
            T P+P   P  S P      P  + PSP GS PG   P        G PT     A+ PP
Sbjct: 1293 TPPSPKGGPATSPPKGAPTPPAATPPSPKGS-PGTPPP-------KGAPT---PPAVTPP 1341

Query: 66   GAQGSQSTYTELLLVTGEMGKGIRPTYAGSK 96
              +G     T  L  T    KG  PT   SK
Sbjct: 1342 SPKG-----TPTLPATTPSSKG-GPTTPSSK 1366



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 14/77 (18%)

Query: 2    SYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPG-----ATAPCRPLFKDFGPPTV 56
            S K     P++TP     GP TP P G+   P+ + P      AT P +      G PT 
Sbjct: 1075 SLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHK------GAPTT 1128

Query: 57   GCMQAMKPPGAQGSQST 73
                A  PP  +G  +T
Sbjct: 1129 ---PAATPPSPKGGLAT 1142



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 5    PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAP-CRPLFKDFGPPTVGCMQAMK 63
            PTTPA  +TP     GP TP P G+   P+ + P        P  K    P V     + 
Sbjct: 1241 PTTPA--ATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAV-----VT 1293

Query: 64   PPGAQGSQST 73
            PP  +G  +T
Sbjct: 1294 PPSPKGGPAT 1303



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 5    PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGAT-APCRPLFKDFGPPTVGCMQAMK 63
            PTTPA  +TP     G  TP P G+  +P+ + P     P  P  K  G PT     A  
Sbjct: 1218 PTTPA--ATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPK--GAPT---PPAAT 1270

Query: 64   PPGAQGSQST 73
            PP  +G  +T
Sbjct: 1271 PPSLKGGLAT 1280



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 7    TPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKPPG 66
            TP P   P  +TP    P P G   +PS  G        P     GP T     A  PP 
Sbjct: 1050 TPLPKGAP--TTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPA 1107

Query: 67   A 67
            A
Sbjct: 1108 A 1108



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 16/74 (21%)

Query: 5    PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPG-----ATAPCRPLFKDFGPPTVGCM 59
            PTTPA  +TP     G  TP P G+  +P+ + P      AT P +      G PT    
Sbjct: 1126 PTTPA--ATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPK------GAPTT--- 1174

Query: 60   QAMKPPGAQGSQST 73
             A  PP  +G  +T
Sbjct: 1175 PAATPPSPKGGLAT 1188



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 11/77 (14%)

Query: 5    PTTPAP--SSTPGFSTP-----GPGTPVPTGSVPSPSGSGPG----ATAPCRPLFKDFGP 53
            P T  P  + TP  +TP      PGTP P G+   P+ + P      T P        GP
Sbjct: 1301 PATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGP 1360

Query: 54   PTVGCMQAMKPPGAQGS 70
             T    +   PP A  S
Sbjct: 1361 TTPSSKEGPTPPAATPS 1377



 Score = 30.0 bits (66), Expect = 0.42
 Identities = 27/70 (38%), Positives = 32/70 (45%), Gaps = 12/70 (17%)

Query: 6    TTPAPSSTPGFSTP---GPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAM 62
            T P+P  +P  +TP   G  TP P  + PSP GS P AT    PL K  G PT       
Sbjct: 1015 TPPSPKGSPA-ATPFPKGASTP-PAATPPSPKGS-PAAT----PLPK--GAPTTPAATLP 1065

Query: 63   KPPGAQGSQS 72
             P G   + S
Sbjct: 1066 SPKGGPATPS 1075



 Score = 30.0 bits (66), Expect = 0.42
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 5    PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGP---GATAPCRPLFKDFGPPTVGCMQA 61
            PTTPA  +TP     G  TP P G+  +P+ + P   G  A   P     G PT     A
Sbjct: 1149 PTTPA--ATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPK----GAPTT---PA 1199

Query: 62   MKPPGAQGSQST 73
              PP  +G  +T
Sbjct: 1200 ATPPSPKGGLAT 1211



 Score = 30.0 bits (66), Expect = 0.42
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 5    PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGP---GATAPCRPLFKDFGPPTVGCMQA 61
            PTTPA  +TP     G  TP P G+  +P+ + P   G  A   P     G PT     A
Sbjct: 1172 PTTPA--ATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPK----GAPTT---PA 1222

Query: 62   MKPPGAQGSQST 73
              PP  +G  +T
Sbjct: 1223 ATPPSPKGGLAT 1234



 Score = 30.0 bits (66), Expect = 0.42
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 5    PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKP 64
            P TPAP   P      P +P     VP+   S     AP   L     P T+   +A+ P
Sbjct: 1494 PATPAPMGAPTLPAVIPSSP---KEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIP 1550

Query: 65   P 65
            P
Sbjct: 1551 P 1551



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 13/77 (16%)

Query: 5    PTTPAPSS--TPGFSTP-----GPGTPVPTGSVPSPSGSGPGAT-APCRPLFKDFGPPTV 56
            P +P+P    TP  +TP     GP TP P  +   P+ + P     P  P  K  G PT 
Sbjct: 931  PASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPK--GAPT- 987

Query: 57   GCMQAMKPPGAQGSQST 73
                A  PP  +G  +T
Sbjct: 988  --PPAATPPSPKGGPAT 1002



 Score = 28.9 bits (63), Expect = 0.93
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 5    PTTPA---PSSTPGFSTPG-PGTPVPTGSVP-SPSGSGPGATAP 43
            PTTPA   PS   G +TP   G P P  + P SP G GP   +P
Sbjct: 1057 PTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKG-GPATPSP 1099



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 2    SYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSP 33
            S K     P+ TP     GP TP P G+  SP
Sbjct: 1609 SPKEAPTPPAVTPPSPEKGPATPAPKGTPTSP 1640



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 2   SYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQA 61
           ++ PT P+P   P   TP   TP+    V  P    P  +    P  K+ GP T    QA
Sbjct: 853 THSPTPPSPKGAP---TPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKE-GPATPAPKQA 908



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 14/106 (13%)

Query: 8    PAPSSTPGFSTP---GPGTPVPTGS----VPSPSGS----GPGAT---APCRPLFKDFGP 53
            PAP STP  + P   GP T   + +     P PS      GP +T   AP  P+ KD   
Sbjct: 1688 PAPESTPIITAPTRKGPQTKKSSATSPPICPDPSAKNGSKGPLSTVAPAPLLPVQKDSSK 1747

Query: 54   PTVGCMQAMKPPGAQGSQSTYTELLLVTGEMGKGIRPTYAGSKSAA 99
               G   +  P G      +     L      K +    + S SAA
Sbjct: 1748 TAKGKDASHSPKGPLAPPESKASTPLTAAAFEKVLPKPESASVSAA 1793



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 11/70 (15%)

Query: 5    PTTPAPSSTPGFST-PGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMK 63
            P    PS   G +T P  G P    + P PS  G  AT P +      G PT     A  
Sbjct: 1106 PAATPPSPKGGLATPPHKGAPTTPAATP-PSPKGGLATPPPK------GAPTT---PAAT 1155

Query: 64   PPGAQGSQST 73
            PP  +G  +T
Sbjct: 1156 PPSPKGGLAT 1165


>gi|169171626 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 205

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 16/88 (18%)

Query: 10 PSSTPGFSTPGPGTPVPTGSVPSPSGS----GPGATAPCRPLFKDFGPPTVGCMQAMKPP 65
          PSS    ++PGP    P G V  P       GP   + C PL    GPP           
Sbjct: 23 PSSCLAAASPGPAPAQPDG-VSQPKAPFLNVGPSGPSSCLPLMACAGPPE---------- 71

Query: 66 GAQGSQSTYTELLLVTGEMGKGIRPTYA 93
           A  S+    +LL   G  G G+ PT A
Sbjct: 72 -AARSRPRQAQLLPGVGPWGHGLCPTVA 98


>gi|89026075 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 205

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 16/88 (18%)

Query: 10 PSSTPGFSTPGPGTPVPTGSVPSPSGS----GPGATAPCRPLFKDFGPPTVGCMQAMKPP 65
          PSS    ++PGP    P G V  P       GP   + C PL    GPP           
Sbjct: 23 PSSCLAAASPGPAPAQPDG-VSQPKAPFLNVGPSGPSSCLPLMACAGPPE---------- 71

Query: 66 GAQGSQSTYTELLLVTGEMGKGIRPTYA 93
           A  S+    +LL   G  G G+ PT A
Sbjct: 72 -AARSRPRQAQLLPGVGPWGHGLCPTVA 98


>gi|89025126 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 205

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 16/88 (18%)

Query: 10 PSSTPGFSTPGPGTPVPTGSVPSPSGS----GPGATAPCRPLFKDFGPPTVGCMQAMKPP 65
          PSS    ++PGP    P G V  P       GP   + C PL    GPP           
Sbjct: 23 PSSCLAAASPGPAPAQPDG-VSQPKAPFLNVGPSGPSSCLPLMACAGPPE---------- 71

Query: 66 GAQGSQSTYTELLLVTGEMGKGIRPTYA 93
           A  S+    +LL   G  G G+ PT A
Sbjct: 72 -AARSRPRQAQLLPGVGPWGHGLCPTVA 98


>gi|239508901 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 205

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 16/88 (18%)

Query: 10 PSSTPGFSTPGPGTPVPTGSVPSPSGS----GPGATAPCRPLFKDFGPPTVGCMQAMKPP 65
          PSS    ++PGP    P G V  P       GP   + C PL    GPP           
Sbjct: 23 PSSCLAAASPGPAPAQPDG-VSQPKAPFLNVGPSGPSSCLPLMACAGPPE---------- 71

Query: 66 GAQGSQSTYTELLLVTGEMGKGIRPTYA 93
           A  S+    +LL   G  G G+ PT A
Sbjct: 72 -AARSRPRQAQLLPGVGPWGHGLCPTVA 98


>gi|24497609 nucleoporin 62kDa [Homo sapiens]
          Length = 522

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 21/94 (22%)

Query: 2   SYKPTTPAP----SSTPGFSTPG---PGTPVPTGSVPS--PSGSGPGATAP--------- 43
           S +PT PA      +TP  +T G   P  P PT ++ S  PS     ATAP         
Sbjct: 179 SAQPTAPATLPFTPATPAATTAGATQPAAPTPTATITSTGPSLFASIATAPTSSATTGLS 238

Query: 44  -CRPLFKDFGPPTVGCMQ-AMKPPGAQGSQSTYT 75
            C P+    G PT G    ++K PGA    ST T
Sbjct: 239 LCTPV-TTAGAPTAGTQGFSLKAPGAASGTSTTT 271



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 6   TTPAPSSTPG-FSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGP--PTVGCMQAM 62
           T+ AP++T G FS  G  T  P+G     +G+    TAP    F    P   T G  Q  
Sbjct: 147 TSVAPATTSGGFSFTGGSTAQPSGFNIGSAGNSAQPTAPATLPFTPATPAATTAGATQPA 206

Query: 63  KP 64
            P
Sbjct: 207 AP 208


>gi|24497607 nucleoporin 62kDa [Homo sapiens]
          Length = 522

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 21/94 (22%)

Query: 2   SYKPTTPAP----SSTPGFSTPG---PGTPVPTGSVPS--PSGSGPGATAP--------- 43
           S +PT PA      +TP  +T G   P  P PT ++ S  PS     ATAP         
Sbjct: 179 SAQPTAPATLPFTPATPAATTAGATQPAAPTPTATITSTGPSLFASIATAPTSSATTGLS 238

Query: 44  -CRPLFKDFGPPTVGCMQ-AMKPPGAQGSQSTYT 75
            C P+    G PT G    ++K PGA    ST T
Sbjct: 239 LCTPV-TTAGAPTAGTQGFSLKAPGAASGTSTTT 271



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 6   TTPAPSSTPG-FSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGP--PTVGCMQAM 62
           T+ AP++T G FS  G  T  P+G     +G+    TAP    F    P   T G  Q  
Sbjct: 147 TSVAPATTSGGFSFTGGSTAQPSGFNIGSAGNSAQPTAPATLPFTPATPAATTAGATQPA 206

Query: 63  KP 64
            P
Sbjct: 207 AP 208


>gi|24497605 nucleoporin 62kDa [Homo sapiens]
          Length = 522

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 21/94 (22%)

Query: 2   SYKPTTPAP----SSTPGFSTPG---PGTPVPTGSVPS--PSGSGPGATAP--------- 43
           S +PT PA      +TP  +T G   P  P PT ++ S  PS     ATAP         
Sbjct: 179 SAQPTAPATLPFTPATPAATTAGATQPAAPTPTATITSTGPSLFASIATAPTSSATTGLS 238

Query: 44  -CRPLFKDFGPPTVGCMQ-AMKPPGAQGSQSTYT 75
            C P+    G PT G    ++K PGA    ST T
Sbjct: 239 LCTPV-TTAGAPTAGTQGFSLKAPGAASGTSTTT 271



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 6   TTPAPSSTPG-FSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGP--PTVGCMQAM 62
           T+ AP++T G FS  G  T  P+G     +G+    TAP    F    P   T G  Q  
Sbjct: 147 TSVAPATTSGGFSFTGGSTAQPSGFNIGSAGNSAQPTAPATLPFTPATPAATTAGATQPA 206

Query: 63  KP 64
            P
Sbjct: 207 AP 208


>gi|24497603 nucleoporin 62kDa [Homo sapiens]
          Length = 522

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 21/94 (22%)

Query: 2   SYKPTTPAP----SSTPGFSTPG---PGTPVPTGSVPS--PSGSGPGATAP--------- 43
           S +PT PA      +TP  +T G   P  P PT ++ S  PS     ATAP         
Sbjct: 179 SAQPTAPATLPFTPATPAATTAGATQPAAPTPTATITSTGPSLFASIATAPTSSATTGLS 238

Query: 44  -CRPLFKDFGPPTVGCMQ-AMKPPGAQGSQSTYT 75
            C P+    G PT G    ++K PGA    ST T
Sbjct: 239 LCTPV-TTAGAPTAGTQGFSLKAPGAASGTSTTT 271



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 6   TTPAPSSTPG-FSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGP--PTVGCMQAM 62
           T+ AP++T G FS  G  T  P+G     +G+    TAP    F    P   T G  Q  
Sbjct: 147 TSVAPATTSGGFSFTGGSTAQPSGFNIGSAGNSAQPTAPATLPFTPATPAATTAGATQPA 206

Query: 63  KP 64
            P
Sbjct: 207 AP 208


>gi|31543543 retinoic acid induced 17 [Homo sapiens]
          Length = 1067

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 3   YKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAM 62
           Y P +  P+    +  P P  P+        S + PG   P +P    + PPTV   Q  
Sbjct: 418 YGPNSQFPTQPGQYPAPNPPRPLT-------SPNYPGQRMPSQPSSGQYPPPTVNMGQYY 470

Query: 63  KPPGAQGSQSTYT 75
           KP    G  +T++
Sbjct: 471 KPEQFNGQNNTFS 483



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 4   KPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMK 63
           +P  P P +    S P PG P P     +P  S P   +P + +   F P     M A+ 
Sbjct: 497 RPPRPVPVANYPHS-PVPGNPTPP---MTPGSSIPPYLSPSQDVKPPFPPDIKPNMSALP 552

Query: 64  PPGA 67
           PP A
Sbjct: 553 PPPA 556


>gi|23592232 mediator complex subunit 19 [Homo sapiens]
          Length = 194

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 27/63 (42%), Positives = 29/63 (46%), Gaps = 19/63 (30%)

Query: 8  PAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKPPGA 67
          P P +  GF   GPG P P    P P+G GPG TAP         PPT     A  PPGA
Sbjct: 15 PPPPTALGF---GPGKPPPPP--PPPAGGGPG-TAP---------PPTA----ATAPPGA 55

Query: 68 QGS 70
            S
Sbjct: 56 DKS 58


>gi|41281612 zinc finger protein 828 [Homo sapiens]
          Length = 812

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 1   MSYKPTTPAPSSTPGFSTPG-PGTPVPTGSVPSPSGSGPGATAPCRP 46
           +S +P  PAP+ +PG   PG PG+P P  S PS S SGP   A   P
Sbjct: 296 VSPEPRRPAPAVSPGSWKPGPPGSPRPWKSNPSAS-SGPWKPAKPAP 341



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 10/62 (16%)

Query: 3   YKPTTPAPSSTPG------FSTPGPGTPVPTGSVPSPSGSGPGATA----PCRPLFKDFG 52
           +KP  PAPS +PG        +PGP  P P+ S  S   S    ++    P  P     G
Sbjct: 334 WKPAKPAPSVSPGPWKPIPSVSPGPWKPTPSVSSASWKSSSVSPSSWKSPPASPESWKSG 393

Query: 53  PP 54
           PP
Sbjct: 394 PP 395


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 8/83 (9%)

Query: 12  STPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKPPGAQGSQ 71
           ST G S PGP  P     +P P G+ PG      P  +   P   G M    PPG  G  
Sbjct: 171 STGGISVPGPMGPSGPRGLPGPPGA-PGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKN 229

Query: 72  STYTELLLVTGEMGKGIRPTYAG 94
                     GE GK  RP   G
Sbjct: 230 GD-------DGEAGKPGRPGERG 245



 Score = 30.0 bits (66), Expect = 0.42
 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 10  PSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKPPGAQG 69
           P+  PG   P PG P P G   SP   GP A AP  P     GP  +   + +     Q 
Sbjct: 915 PAGRPGEVGP-PGPPGPAGEKGSPGADGP-AGAPGTP-----GPQGIAGQRGVVGLPGQR 967

Query: 70  SQSTYTELLLVTGEMGK 86
            +  +  L   +GE GK
Sbjct: 968 GERGFPGLPGPSGEPGK 984



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 8   PAPSSTPGF-STPGPGTPVPTGSVPSPSGSG--PGATAPCRPLFKDFGPPTVGCMQAMKP 64
           P  +  PGF    GP  P   G  P P G+   PGA            P  VG      P
Sbjct: 403 PGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGP 462

Query: 65  PGAQGSQSTYTE 76
            G +G +    E
Sbjct: 463 AGEEGKRGARGE 474



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 9/71 (12%)

Query: 8   PAPSSTPGFSTP-----GPGTPVPTGSVPSPSGSGP----GATAPCRPLFKDFGPPTVGC 58
           P P    GF+ P      PG     G   +   +GP    G   P  P+     P   G 
Sbjct: 805 PGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGA 864

Query: 59  MQAMKPPGAQG 69
             +  PPGA G
Sbjct: 865 RGSAGPPGATG 875



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 23/91 (25%)

Query: 8   PAPSSTPGFS--TPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKPP 65
           P  +  PG    T  PG+P P G    P  +G       RP     GPP         PP
Sbjct: 529 PGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDG----RP-----GPP--------GPP 571

Query: 66  GAQGSQSTYTELLLVTGEMGKGIRPTYAGSK 96
           GA+G       ++   G  G    P  AG +
Sbjct: 572 GARGQAG----VMGFPGPKGAAGEPGKAGER 598


>gi|150417978 platelet glycoprotein Ib alpha polypeptide precursor
           [Homo sapiens]
          Length = 639

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 5   PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGAT 41
           PTTP P+S P    P P TP PT S P+PS + P  T
Sbjct: 408 PTTPEPTSEP---APSPTTPEPT-SEPAPSPTTPEPT 440



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 8   PAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRP 46
           PAP+ T    TP P TP PT S P+PS + P  T+   P
Sbjct: 395 PAPNMTTLEPTPSPTTPEPT-SEPAPSPTTPEPTSEPAP 432


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,854,477
Number of Sequences: 37866
Number of extensions: 517710
Number of successful extensions: 5879
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 566
Number of HSP's that attempted gapping in prelim test: 3509
Number of HSP's gapped (non-prelim): 2668
length of query: 109
length of database: 18,247,518
effective HSP length: 79
effective length of query: 30
effective length of database: 15,256,104
effective search space: 457683120
effective search space used: 457683120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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