BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239743776 PREDICTED: hypothetical protein XP_002344295 [Homo sapiens] (109 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239743776 PREDICTED: hypothetical protein XP_002344295 [Homo ... 231 1e-61 gi|5031669 cyclin-dependent kinase 2 associated protein 2 [Homo ... 186 3e-48 gi|4758188 CDK2-associated protein 1 [Homo sapiens] 80 3e-16 gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 41 2e-04 gi|21071077 dishevelled-associated activator of morphogenesis 1 ... 40 5e-04 gi|116284392 mucin 2 precursor [Homo sapiens] 39 9e-04 gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] 39 9e-04 gi|46560555 transmembrane protein 132E [Homo sapiens] 37 0.003 gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 36 0.006 gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 36 0.006 gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 36 0.006 gi|157168329 formin 1 [Homo sapiens] 36 0.008 gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 36 0.008 gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 35 0.010 gi|83367077 mucin 16 [Homo sapiens] 35 0.013 gi|39930511 collagen and calcium binding EGF domains 1 [Homo sap... 35 0.013 gi|163965366 nascent polypeptide-associated complex alpha subuni... 35 0.013 gi|169171626 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017 gi|89026075 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017 gi|89025126 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017 gi|239508901 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017 gi|24497609 nucleoporin 62kDa [Homo sapiens] 35 0.017 gi|24497607 nucleoporin 62kDa [Homo sapiens] 35 0.017 gi|24497605 nucleoporin 62kDa [Homo sapiens] 35 0.017 gi|24497603 nucleoporin 62kDa [Homo sapiens] 35 0.017 gi|31543543 retinoic acid induced 17 [Homo sapiens] 35 0.017 gi|23592232 mediator complex subunit 19 [Homo sapiens] 34 0.022 gi|41281612 zinc finger protein 828 [Homo sapiens] 34 0.022 gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 34 0.029 gi|150417978 platelet glycoprotein Ib alpha polypeptide precurso... 34 0.029 >gi|239743776 PREDICTED: hypothetical protein XP_002344295 [Homo sapiens] Length = 109 Score = 231 bits (588), Expect = 1e-61 Identities = 109/109 (100%), Positives = 109/109 (100%) Query: 1 MSYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQ 60 MSYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQ Sbjct: 1 MSYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQ 60 Query: 61 AMKPPGAQGSQSTYTELLLVTGEMGKGIRPTYAGSKSAAERLKRGIIHP 109 AMKPPGAQGSQSTYTELLLVTGEMGKGIRPTYAGSKSAAERLKRGIIHP Sbjct: 61 AMKPPGAQGSQSTYTELLLVTGEMGKGIRPTYAGSKSAAERLKRGIIHP 109 >gi|5031669 cyclin-dependent kinase 2 associated protein 2 [Homo sapiens] Length = 126 Score = 186 bits (472), Expect = 3e-48 Identities = 91/108 (84%), Positives = 95/108 (87%) Query: 1 MSYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQ 60 MSYKP PAPSSTPG STPGPGTPVPTGSVPSPSGS PGA AP RPLF DFGPP++G +Q Sbjct: 1 MSYKPIAPAPSSTPGSSTPGPGTPVPTGSVPSPSGSVPGAGAPFRPLFNDFGPPSMGYVQ 60 Query: 61 AMKPPGAQGSQSTYTELLLVTGEMGKGIRPTYAGSKSAAERLKRGIIH 108 AMKPPGAQGSQSTYT+LL V EMGK IRPTYAGSKSA ERLKRGIIH Sbjct: 61 AMKPPGAQGSQSTYTDLLSVIEEMGKEIRPTYAGSKSAMERLKRGIIH 108 >gi|4758188 CDK2-associated protein 1 [Homo sapiens] Length = 115 Score = 80.5 bits (197), Expect = 3e-16 Identities = 51/108 (47%), Positives = 60/108 (55%), Gaps = 11/108 (10%) Query: 1 MSYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQ 60 MSYKP A + GSV SPS S ++ R L D+GPP++G Q Sbjct: 1 MSYKPNLAAHMPAAALNA--------AGSVHSPSTS-MATSSQYRQLLSDYGPPSLGYTQ 51 Query: 61 AMKPPGAQGSQSTYTELLLVTGEMGKGIRPTYAGSKSAAERLKRGIIH 108 +Q QS Y ELL + E+GK IRPTYAGSKSA ERLKRGIIH Sbjct: 52 GTG--NSQVPQSKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIH 97 >gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo sapiens] Length = 245 Score = 40.8 bits (94), Expect = 2e-04 Identities = 28/79 (35%), Positives = 33/79 (41%), Gaps = 9/79 (11%) Query: 2 SYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATA-------PCRPLFKDFGPP 54 S PT P P F GP P P G P+P+ GPG T P L + +G P Sbjct: 74 SVPPTGPPPGPPAPFPPSGPSCPPPGGPYPAPTVPGPGPTGPYPTPNMPFPELPRPYGAP 133 Query: 55 TVGCMQAMKPPGAQGSQST 73 T A P G GS S+ Sbjct: 134 TDPA--AAGPLGPWGSMSS 150 Score = 35.0 bits (79), Expect = 0.013 Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 6/56 (10%) Query: 5 PTTPA--PSSTPGFSTPG--PGTPVPTGSVPS--PSGSGPGATAPCRPLFKDFGPP 54 P+ P+ PS P +TP P P PTG PS P+G PG AP P PP Sbjct: 43 PSAPSSVPSGLPPSATPSTVPFGPAPTGMYPSVPPTGPPPGPPAPFPPSGPSCPPP 98 Score = 29.6 bits (65), Expect = 0.54 Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 5 PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKP 64 P P S + G PG G PT ++P PS GP AP P PP P Sbjct: 141 PLGPWGSMSSGPWAPGMGGQYPTPNMPYPS-PGP-YPAPPPPQAPGAAPPV---PWGTVP 195 Query: 65 PGAQGSQSTY 74 PGA G + Y Sbjct: 196 PGAWGPPAPY 205 Score = 28.1 bits (61), Expect = 1.6 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 17/70 (24%) Query: 9 APSSTPGFSTPGPGTPVPTG----------SVPS--PSGSGPGATAPCRPLFKDFGPPTV 56 +P+ T S PG P P G S PS PSG P AT P FGP Sbjct: 15 SPAKTSAVSNTKPGQP-PQGWPGSNPWNNPSAPSSVPSGLPPSATPSTVP----FGPAPT 69 Query: 57 GCMQAMKPPG 66 G ++ P G Sbjct: 70 GMYPSVPPTG 79 Score = 26.9 bits (58), Expect = 3.5 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 6/37 (16%) Query: 8 PAPSSTPGFSTPGPGTPVPTGS------VPSPSGSGP 38 P P PG + P P VP G+ P+P+GS P Sbjct: 177 PPPPQAPGAAPPVPWGTVPPGAWGPPAPYPAPTGSYP 213 Score = 26.9 bits (58), Expect = 3.5 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%) Query: 2 SYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAP 43 ++ P P P+ T + TPG PT S P SGP P Sbjct: 198 AWGPPAPYPAPTGSYPTPG---LYPTPSNPFQVPSGPSGAPP 236 Score = 26.2 bits (56), Expect = 6.0 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 5 PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCR-PLFKDFGPPTVG 57 P P + PG P P PTGS P+P G P + P + P PP G Sbjct: 187 PPVPWGTVPPGAWGPPAPYPAPTGSYPTP-GLYPTPSNPFQVPSGPSGAPPMPG 239 >gi|21071077 dishevelled-associated activator of morphogenesis 1 [Homo sapiens] Length = 1078 Score = 39.7 bits (91), Expect = 5e-04 Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 8/64 (12%) Query: 5 PTTPAPSSTPG-FSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMK 63 P P PSS PG P P P+P G +P P P P P GPP +G + M Sbjct: 536 PGGPFPSSVPGSLLPPPPPPPLPGGMLPPPPPPLPPGGPPPPP-----GPPPLGAI--MP 588 Query: 64 PPGA 67 PPGA Sbjct: 589 PPGA 592 Score = 26.2 bits (56), Expect = 6.0 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Query: 8 PAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPG 39 P P PG P PG P P G++ P G+ G Sbjct: 565 PPPPLPPGGPPPPPG-PPPLGAIMPPPGAPMG 595 >gi|116284392 mucin 2 precursor [Homo sapiens] Length = 5179 Score = 38.9 bits (89), Expect = 9e-04 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 8/50 (16%) Query: 5 PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPP 54 P+TP+P+ TP STP P P T S P+P G+ P P DF PP Sbjct: 4377 PSTPSPTPTPSKSTPTPSKPSSTPSKPTP-GTKP-------PECPDFDPP 4418 Score = 33.9 bits (76), Expect = 0.029 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Query: 6 TTPAPSSTPGFSTPGPGTPVPTGSVPSP----SGSGPGATAPCRPLFKDFGPPTVGCMQA 61 TTP+P +T + P T +P + PSP + + P T P P PPT+ Sbjct: 1537 TTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTI--TTT 1594 Query: 62 MKPPGAQGSQSTYT 75 PP S T T Sbjct: 1595 TPPPTTTPSPPTTT 1608 Score = 33.5 bits (75), Expect = 0.038 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%) Query: 6 TTPAPSSTPGFSTPGPGTPVPTGSVPSP----SGSGPGATAPCRPLFKDFGPPT 55 TTP+P +T + P T +P + PSP + + P T P P PPT Sbjct: 1498 TTPSPPTTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPT 1551 Score = 32.3 bits (72), Expect = 0.084 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 6 TTPAPSSTPGFSTPGPGTPVPTGSVP-SPSGSGPGATAPCRPLFKDFGPP 54 TTP P++TP T P P T S P + + + P T P P PP Sbjct: 1462 TTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPP 1511 Score = 31.2 bits (69), Expect = 0.19 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 6 TTPAPSSTPG---FSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPT 55 TTP P++TP +TP P T T P+ + S P T P PPT Sbjct: 1570 TTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPT 1622 Score = 31.2 bits (69), Expect = 0.19 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 12/73 (16%) Query: 6 TTPAPSSTPG---FSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAM 62 TTP P++TP +TP P P+ T + P P+ T P P+ PPT M Sbjct: 1649 TTPPPTTTPSPPTTTTPSP--PITTTTTPPPT------TTPSSPITTTPSPPTT-TMTTP 1699 Query: 63 KPPGAQGSQSTYT 75 P S T T Sbjct: 1700 SPTTTPSSPITTT 1712 Score = 30.8 bits (68), Expect = 0.24 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Query: 5 PTTPAPSST--PGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPP 54 P TP S+T P +TP P T P+ + S P T P P+ PP Sbjct: 1625 PITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPP 1676 Score = 30.0 bits (66), Expect = 0.42 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 6 TTPAPSST---PGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPT 55 TTP+P +T P +TP P T T P+ + S P T P PPT Sbjct: 1468 TTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPASTTTLPPT 1520 Score = 30.0 bits (66), Expect = 0.42 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 6 TTPAPSSTPGFSTPGPGTPVPTGSVPSP----SGSGPGATAPCRPLFKDFGPP 54 TTP+P +T + P T +P + PSP + + P T P P PP Sbjct: 1616 TTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPP 1668 Score = 29.6 bits (65), Expect = 0.54 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 6 TTPAPSSTPGFSTPGPGTPVPTGSVPSP----SGSGPGATAPCRPLFKDFGPP 54 TTP+P +T P T +P + PSP + + P T P P+ PP Sbjct: 1397 TTPSPPTTTPSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPP 1449 Score = 29.6 bits (65), Expect = 0.54 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 13/82 (15%) Query: 6 TTPAPSSTPG-----FSTPGPGT----PVPTGSVPSPSGS-GPGATAPCRPLFKDFGPPT 55 TTP P++TP +TP P T P+ T + P P+ + P T P P PPT Sbjct: 1430 TTPPPTTTPSPPITTTTTPPPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTP-SPPT 1488 Query: 56 VGCMQAMKPPGAQGSQSTYTEL 77 PP S T T + Sbjct: 1489 T--TTTTPPPTTTPSPPTTTPI 1508 Score = 28.9 bits (63), Expect = 0.93 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 5 PTTPAPSST--PGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPT 55 P TP S+T P +TP P T T P+ + S P T P PPT Sbjct: 1507 PITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPT 1559 Score = 28.5 bits (62), Expect = 1.2 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 9/75 (12%) Query: 6 TTPAPSST-----PGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQ 60 TTP+P +T P +TP P T P+ + S P +T P PPT Sbjct: 1420 TTPSPPTTTTTTPPPTTTPSPPITTTTTPPPTTTPSPPISTTTTPPPTTTPSPPTT---- 1475 Query: 61 AMKPPGAQGSQSTYT 75 PP S T T Sbjct: 1476 TPSPPTTTPSPPTTT 1490 Score = 28.1 bits (61), Expect = 1.6 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Query: 6 TTPAPSST-----PGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPP 54 TTP+P +T P +TP P T P + P+ + + P T P P PP Sbjct: 1482 TTPSPPTTTTTTPPPTTTPSPPTTTPI-TPPASTTTLPPTTTPSPPTTTTTTPP 1534 Score = 28.1 bits (61), Expect = 1.6 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%) Query: 5 PTTPAPSSTPGFSTPGPGTPVPTGSVPSP--SGSGPGATAPCRPLFKDFGPP 54 P TP S+T T P P T + P P + S P T P P PP Sbjct: 1546 PITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPP 1597 Score = 27.7 bits (60), Expect = 2.1 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Query: 6 TTPAP-----SSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPT 55 TTP+P ++ P +TP P T T P+ + S P T P PPT Sbjct: 1584 TTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPT 1638 Score = 27.3 bits (59), Expect = 2.7 Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 18/84 (21%) Query: 6 TTPAPSST-----PGFSTPGPG-----TPVPTGSVPSP----SGSGPGATAPCRPLFKDF 51 TTP+P T P +TP P TP PT + PSP + + P T P P+ Sbjct: 1404 TTPSPPPTSTTTLPPTTTPSPPTTTTTTPPPT-TTPSPPITTTTTPPPTTTPSPPISTTT 1462 Query: 52 GPPTVGCMQAMKPPGAQGSQSTYT 75 PP PP S T T Sbjct: 1463 TPPPT---TTPSPPTTTPSPPTTT 1483 Score = 27.3 bits (59), Expect = 2.7 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Query: 6 TTPAPSST-----PGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPP 54 TTP+P +T P +TP P T P + P+ + + P T P P PP Sbjct: 1600 TTPSPPTTTTTTPPPTTTPSPPTTTPI-TPPTSTTTLPPTTTPSPPPTTTTTPP 1652 Score = 27.3 bits (59), Expect = 2.7 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 9/77 (11%) Query: 6 TTPAPSSTPGFSTPGPGTPVPTGS----VPSPSGSGPG-----ATAPCRPLFKDFGPPTV 56 TT P+ TP + TP+ T + P+P+G+ G +TAP L PP Sbjct: 4159 TTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTGPPTHTSTAPIAELTTSNPPPES 4218 Query: 57 GCMQAMKPPGAQGSQST 73 Q + + ++ST Sbjct: 4219 STPQTSRSTSSPLTEST 4235 Score = 26.9 bits (58), Expect = 3.5 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 13/58 (22%) Query: 6 TTPAPSST-----PGFSTPGPGTPVPTGSVPSP----SGSGPGATAPCRPLFKDFGPP 54 TTP+P T P +TP P PT + PSP + + P T P P PP Sbjct: 1560 TTPSPPPTTTTTPPPTTTPSP----PTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPP 1613 Score = 25.8 bits (55), Expect = 7.9 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 7/77 (9%) Query: 6 TTPAPSSTPGFSTPGPGT----PVPTGSVPSPSGS-GPGATAPCRPLFKDFGPPTVGCMQ 60 TTP+P +T +TP P T P+ T + PS + + P T P P M Sbjct: 1687 TTPSPPTTT-MTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMT 1745 Query: 61 AMKPPGAQGSQSTYTEL 77 + PP S T T L Sbjct: 1746 TL-PPTTTSSPLTTTPL 1761 Score = 25.8 bits (55), Expect = 7.9 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 9/70 (12%) Query: 6 TTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGA---------TAPCRPLFKDFGPPTV 56 TTP+P +T + P T P + P P P T PC PL G Sbjct: 1735 TTPSPPTTTMTTLPPTTTSSPLTTTPLPPSITPPTFSPFSTTTPTTPCVPLCNWTGWLDS 1794 Query: 57 GCMQAMKPPG 66 G KP G Sbjct: 1795 GKPNFHKPGG 1804 Score = 25.8 bits (55), Expect = 7.9 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 7 TPAPSST---PGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMK 63 +P PS+T PG TP GT + S P+PS T+ P P++ ++ Sbjct: 4269 SPPPSTTTSPPG--TPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTPLSTPSIIRTTGLR 4326 Query: 64 P 64 P Sbjct: 4327 P 4327 >gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] Length = 2639 Score = 38.9 bits (89), Expect = 9e-04 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 8/50 (16%) Query: 5 PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPP 54 P+TP+P+ TP STP P P T S P+P G+ P P DF PP Sbjct: 1837 PSTPSPTPTPSKSTPTPSKPSSTPSKPTP-GTKP-------PECPDFDPP 1878 Score = 29.6 bits (65), Expect = 0.54 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 9/87 (10%) Query: 6 TTPAPSSTP-GFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKP 64 TT P+ TP G TP P TP+ T + +P+ + G P P Sbjct: 1527 TTVTPTPTPTGTQTPTP-TPISTTTTVTPTPTPTGTQTPTT-------TPITTTTTVTPT 1578 Query: 65 PGAQGSQSTYTELLLVTGEMGKGIRPT 91 P G+Q+ T L+ T M PT Sbjct: 1579 PTPTGTQTPTTVLITTTTTMTPTPTPT 1605 Score = 26.2 bits (56), Expect = 6.0 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 13/55 (23%) Query: 2 SYKPTTPAPSSTPGFSTPGP---GTPVPTGS----------VPSPSGSGPGATAP 43 S + TTP P +T TP P GT PT + P+P+G+ T P Sbjct: 1330 STQSTTPTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTP 1384 Score = 25.8 bits (55), Expect = 7.9 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 5/81 (6%) Query: 6 TTPAPSSTPGFSTPGPGTPVPTGS----VPSPSGSGPGATAPCRPLFKDFGPPTVGCMQA 61 TT P+ TP + TP+ T + P+P+G+ T P PT QA Sbjct: 1389 TTVTPTPTPTGTQTPTSTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQA 1448 Query: 62 MKPPGAQGSQSTYTELLLVTG 82 P A + ST T TG Sbjct: 1449 -PTPTAITTTSTVTPTPTPTG 1468 Score = 25.8 bits (55), Expect = 7.9 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 7 TPAPSST---PGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMK 63 +P PS+T PG TP GT + S P+PS T+ P P++ ++ Sbjct: 1729 SPPPSTTTSPPG--TPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTPLSTPSIIRTTGLR 1786 Query: 64 P 64 P Sbjct: 1787 P 1787 >gi|46560555 transmembrane protein 132E [Homo sapiens] Length = 984 Score = 37.0 bits (84), Expect = 0.003 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 8/55 (14%) Query: 14 PGFSTPGPG--------TPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQ 60 PG S PGPG P ++P+P GPG +P P +DF P G +Q Sbjct: 735 PGPSQPGPGGGEDEARGAGPPGSALPAPEAPGPGTASPVVPPTEDFLPLPTGFLQ 789 >gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] Length = 1012 Score = 36.2 bits (82), Expect = 0.006 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 14/98 (14%) Query: 7 TPAPSS----TPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQA- 61 TPAPSS TP TPGP P+ + P GS + AP +P P QA Sbjct: 194 TPAPSSAPPGTPQLPTPGP---TPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAP 250 Query: 62 ----MKPPGAQ--GSQSTYTELLLVTGEMGKGIRPTYA 93 +PP S + L +TG G+ P++A Sbjct: 251 ALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHA 288 >gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] Length = 1566 Score = 36.2 bits (82), Expect = 0.006 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 14/98 (14%) Query: 7 TPAPSS----TPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQA- 61 TPAPSS TP TPGP P+ + P GS + AP +P P QA Sbjct: 748 TPAPSSAPPGTPQLPTPGP---TPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAP 804 Query: 62 ----MKPPGAQ--GSQSTYTELLLVTGEMGKGIRPTYA 93 +PP S + L +TG G+ P++A Sbjct: 805 ALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHA 842 >gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] Length = 1566 Score = 36.2 bits (82), Expect = 0.006 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 14/98 (14%) Query: 7 TPAPSS----TPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQA- 61 TPAPSS TP TPGP P+ + P GS + AP +P P QA Sbjct: 748 TPAPSSAPPGTPQLPTPGP---TPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAP 804 Query: 62 ----MKPPGAQ--GSQSTYTELLLVTGEMGKGIRPTYA 93 +PP S + L +TG G+ P++A Sbjct: 805 ALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHA 842 >gi|157168329 formin 1 [Homo sapiens] Length = 1196 Score = 35.8 bits (81), Expect = 0.008 Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 2 SYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQA 61 S P P P + G P P P P +P PS +GP P PL PP G Sbjct: 664 SLSPAPPMPPVSAGPPLPPPPPPPPP--LPPPSSAGPPPPPPPPPLPNSPAPPNPGGPPP 721 Query: 62 MKPP 65 PP Sbjct: 722 APPP 725 Score = 26.2 bits (56), Expect = 6.0 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 3/50 (6%) Query: 5 PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPP 54 P P PSS P P P P + P+P G AP P PP Sbjct: 688 PPLPPPSSA---GPPPPPPPPPLPNSPAPPNPGGPPPAPPPPGLAPPPPP 734 >gi|119829187 alpha 1 type XVII collagen [Homo sapiens] Length = 1497 Score = 35.8 bits (81), Expect = 0.008 Identities = 32/92 (34%), Positives = 36/92 (39%), Gaps = 6/92 (6%) Query: 8 PAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTV-GCMQAMKPPG 66 P P PG PG+ P GS SP GP + L + G P V G M PPG Sbjct: 652 PGPHGPPGV----PGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPG 707 Query: 67 AQGSQSTYTELLLVTGEMGKGIRPTYAGSKSA 98 +G Q L TGE G P G A Sbjct: 708 PKGDQGEKGPRGL-TGEPGMRGLPGAVGEPGA 738 Score = 32.0 bits (71), Expect = 0.11 Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 9/69 (13%) Query: 5 PTTPAPSSTPGFSTPGPGTP--VPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAM 62 P P P PG S PGP P P +P P G PG+ F P G Sbjct: 859 PGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGP-PGSFLSNSETFLSGPPGPPG----- 912 Query: 63 KPPGAQGSQ 71 PPG +G Q Sbjct: 913 -PPGPKGDQ 920 >gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] Length = 251 Score = 35.4 bits (80), Expect = 0.010 Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 27/92 (29%) Query: 5 PTTPAPSSTPGFSTPGPG-----TPVP-TGSVPSPSGSGPGATAPCRPLFKDFGPPTVGC 58 P TPA S P P P +PVP G+VPSP P A P RP + P Sbjct: 32 PATPARSPRPPLCAPRPAPGRAQSPVPAAGAVPSP----PAAAHPARPALRGETP----- 82 Query: 59 MQAMKPPGAQGSQSTYTELLLVTGEMGKGIRP 90 PG +G +T GE+ +RP Sbjct: 83 -----APGRRGRATT-------RGEVQPSVRP 102 >gi|83367077 mucin 16 [Homo sapiens] Length = 14507 Score = 35.0 bits (79), Expect = 0.013 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 6/98 (6%) Query: 9 APSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKPPGAQ 68 AP+STPG ST GT S+PSP+ + P P +F + + M+ PG++ Sbjct: 12979 APTSTPGTSTVDLGTSGTPSSLPSPTTAVPLLV----PFTLNFTITNLQYGEDMRHPGSR 13034 Query: 69 GSQSTYTELLLVTGEMGK--GIRPTYAGSKSAAERLKR 104 +T L + G + K + P Y+G + + R ++ Sbjct: 13035 KFNTTERVLQGLLGPLFKNSSVGPLYSGCRLISLRSEK 13072 Score = 32.7 bits (73), Expect = 0.064 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 5/81 (6%) Query: 7 TPAPS-STPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKPP 65 T AP+ STPG ST GT S+PSP+ +GP P +F + + M P Sbjct: 12820 TSAPNTSTPGTSTVDLGTSGTPSSLPSPTSAGPLLV----PFTLNFTITNLQYEEDMHHP 12875 Query: 66 GAQGSQSTYTELLLVTGEMGK 86 G++ +T L + G M K Sbjct: 12876 GSRKFNTTERVLQGLLGPMFK 12896 Score = 30.4 bits (67), Expect = 0.32 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 6 TTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGP 38 T+ SSTPG ST GT S+PSP+ +GP Sbjct: 12509 TSVPTSSTPGTSTVDLGTSGTPFSLPSPATAGP 12541 Score = 29.6 bits (65), Expect = 0.54 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 4/37 (10%) Query: 2 SYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGP 38 S PTT STPG ST GT S PSP+ +GP Sbjct: 12195 SSMPTT----STPGTSTVDVGTSGTPSSSPSPTTAGP 12227 Score = 29.6 bits (65), Expect = 0.54 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 11 SSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAP-CRPLFKDFGPPTVGCMQAMKPPGAQG 69 SS P STPG T P S S GP AT P P +F + + M+ PG++ Sbjct: 13288 SSVPTTSTPGTFTVQPETSETPSSLPGPTATGPVLLPFTLNFTITNLQYEEDMRRPGSRK 13347 Query: 70 SQST 73 +T Sbjct: 13348 FNTT 13351 Score = 28.1 bits (61), Expect = 1.6 Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 18/59 (30%) Query: 5 PTTPAPSSTPGFST------------------PGPGTPVPTGSVPSPSGSGPGATAPCR 45 PTT P S PG T P PG P T S + G+ G T P R Sbjct: 11619 PTTTIPPSIPGVVTSQVTSSATDTSTAIPTLTPSPGEPETTASSATHPGTQTGFTVPIR 11677 Score = 27.7 bits (60), Expect = 2.1 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 20/98 (20%) Query: 8 PAPSSTPGFSTP-------GPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQ 60 P P+S STP G GTP S+PSP+ +GP P +F + + Sbjct: 12666 PVPTS----STPGTSTVDLGSGTP---SSLPSPTTAGPLLV----PFTLNFTITNLKYEE 12714 Query: 61 AMKPPGAQGSQSTYTELLLVTGEMGK--GIRPTYAGSK 96 M PG++ +T L + G M K + P Y+G + Sbjct: 12715 DMHCPGSRKFNTTERVLQSLLGPMFKNTSVGPLYSGCR 12752 Score = 26.9 bits (58), Expect = 3.5 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 5/90 (5%) Query: 11 SSTPGFSTPGPGTPVPTGSVPSP-SGSGPGATAPCRPLFK-DFGPPTVGCMQAMKPPGAQ 68 SS P S PG T V G+ +P S GP A +P LF +F + + M+ PG++ Sbjct: 13600 SSVPTTSIPGTPT-VDLGTSGTPVSKPGPSAASPLLVLFTLNFTITNLRYEENMQHPGSR 13658 Query: 69 GSQSTYTEL--LLVTGEMGKGIRPTYAGSK 96 +T L LL + + P Y+G + Sbjct: 13659 KFNTTERVLQGLLRSLFKSTSVGPLYSGCR 13688 Score = 25.8 bits (55), Expect = 7.9 Identities = 13/28 (46%), Positives = 16/28 (57%) Query: 11 SSTPGFSTPGPGTPVPTGSVPSPSGSGP 38 +STP ST GT VPSP+ +GP Sbjct: 13137 TSTPWTSTVDLGTSGTPSPVPSPTTTGP 13164 >gi|39930511 collagen and calcium binding EGF domains 1 [Homo sapiens] Length = 406 Score = 35.0 bits (79), Expect = 0.013 Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 18/97 (18%) Query: 5 PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGS-GPGATAPCRPLFKD-----FGPP---- 54 P +P P +PGF PG P P G P P GS GP +P K GPP Sbjct: 258 PGSPGPKGSPGF----PGMPGPPGQ-PGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPG 312 Query: 55 ---TVGCMQAMKPPGAQGSQSTYTELLLVTGEMGKGI 88 + G A P G+ G ++ LLL+ ++ I Sbjct: 313 RDGSKGERGAPGPRGSPGPPGSFDFLLLMLADIRNDI 349 Score = 31.6 bits (70), Expect = 0.14 Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 9/76 (11%) Query: 8 PAPSSTPGFSTPGPGTPVPTGS-----VPSPSGS-GP-GATAPCRPLFKDFGPPTVGCMQ 60 P P PG P PG+P P GS +P P G GP G+ P P D G Sbjct: 246 PGPPGLPGGQGP-PGSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGP-SPDLSHIKQGRRG 303 Query: 61 AMKPPGAQGSQSTYTE 76 + PPGA G + E Sbjct: 304 PVGPPGAPGRDGSKGE 319 >gi|163965366 nascent polypeptide-associated complex alpha subunit isoform a [Homo sapiens] Length = 2078 Score = 35.0 bits (79), Expect = 0.013 Identities = 26/75 (34%), Positives = 29/75 (38%), Gaps = 12/75 (16%) Query: 5 PTTPA---PSSTPGFSTPGPG---------TPVPTGSVPSPSGSGPGATAPCRPLFKDFG 52 PTTPA PS G +TP P P P G + +PS G T P G Sbjct: 1195 PTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGG 1254 Query: 53 PPTVGCMQAMKPPGA 67 P T A PP A Sbjct: 1255 PATPPPKGAPTPPAA 1269 Score = 34.7 bits (78), Expect = 0.017 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 13/74 (17%) Query: 5 PTTPAP--SSTPGFSTP-----GPGTPVPTGSVPSPSGSGPGAT-APCRPLFKDFGPPTV 56 P TP+P + TP +TP GP TP P G+ P+ + P P P K G PT Sbjct: 954 PATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPK--GAPT- 1010 Query: 57 GCMQAMKPPGAQGS 70 A+ PP +GS Sbjct: 1011 --PPAVTPPSPKGS 1022 Score = 34.3 bits (77), Expect = 0.022 Identities = 23/69 (33%), Positives = 23/69 (33%), Gaps = 6/69 (8%) Query: 5 PTTPAPSSTPGFSTPGPG------TPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGC 58 P TPAP P S TP P G SPS G P GP T Sbjct: 900 PATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSP 959 Query: 59 MQAMKPPGA 67 A PP A Sbjct: 960 KWAPTPPAA 968 Score = 32.3 bits (72), Expect = 0.084 Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 24/80 (30%) Query: 5 PTTPAPSS--TPGFSTP-----GPGTPVPTG-------SVPSPSGSGPGATAPCRPLFKD 50 P TP+P TP +TP GP TP P G + PSP GS P AT P K Sbjct: 977 PATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGS-PAAT----PFPKG 1031 Query: 51 FGPPTVGCMQAMKPPGAQGS 70 P A PP +GS Sbjct: 1032 ASTP-----PAATPPSPKGS 1046 Score = 32.0 bits (71), Expect = 0.11 Identities = 31/91 (34%), Positives = 35/91 (38%), Gaps = 17/91 (18%) Query: 6 TTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKPP 65 T P+P P S P P + PSP GS PG P G PT A+ PP Sbjct: 1293 TPPSPKGGPATSPPKGAPTPPAATPPSPKGS-PGTPPP-------KGAPT---PPAVTPP 1341 Query: 66 GAQGSQSTYTELLLVTGEMGKGIRPTYAGSK 96 +G T L T KG PT SK Sbjct: 1342 SPKG-----TPTLPATTPSSKG-GPTTPSSK 1366 Score = 31.6 bits (70), Expect = 0.14 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 14/77 (18%) Query: 2 SYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPG-----ATAPCRPLFKDFGPPTV 56 S K P++TP GP TP P G+ P+ + P AT P + G PT Sbjct: 1075 SLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHK------GAPTT 1128 Query: 57 GCMQAMKPPGAQGSQST 73 A PP +G +T Sbjct: 1129 ---PAATPPSPKGGLAT 1142 Score = 31.6 bits (70), Expect = 0.14 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 8/70 (11%) Query: 5 PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAP-CRPLFKDFGPPTVGCMQAMK 63 PTTPA +TP GP TP P G+ P+ + P P K P V + Sbjct: 1241 PTTPA--ATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAV-----VT 1293 Query: 64 PPGAQGSQST 73 PP +G +T Sbjct: 1294 PPSPKGGPAT 1303 Score = 30.8 bits (68), Expect = 0.24 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Query: 5 PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGAT-APCRPLFKDFGPPTVGCMQAMK 63 PTTPA +TP G TP P G+ +P+ + P P P K G PT A Sbjct: 1218 PTTPA--ATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPK--GAPT---PPAAT 1270 Query: 64 PPGAQGSQST 73 PP +G +T Sbjct: 1271 PPSLKGGLAT 1280 Score = 30.4 bits (67), Expect = 0.32 Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 2/61 (3%) Query: 7 TPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKPPG 66 TP P P +TP P P G +PS G P GP T A PP Sbjct: 1050 TPLPKGAP--TTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPA 1107 Query: 67 A 67 A Sbjct: 1108 A 1108 Score = 30.4 bits (67), Expect = 0.32 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 16/74 (21%) Query: 5 PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPG-----ATAPCRPLFKDFGPPTVGCM 59 PTTPA +TP G TP P G+ +P+ + P AT P + G PT Sbjct: 1126 PTTPA--ATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPK------GAPTT--- 1174 Query: 60 QAMKPPGAQGSQST 73 A PP +G +T Sbjct: 1175 PAATPPSPKGGLAT 1188 Score = 30.4 bits (67), Expect = 0.32 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 11/77 (14%) Query: 5 PTTPAP--SSTPGFSTP-----GPGTPVPTGSVPSPSGSGPG----ATAPCRPLFKDFGP 53 P T P + TP +TP PGTP P G+ P+ + P T P GP Sbjct: 1301 PATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGP 1360 Query: 54 PTVGCMQAMKPPGAQGS 70 T + PP A S Sbjct: 1361 TTPSSKEGPTPPAATPS 1377 Score = 30.0 bits (66), Expect = 0.42 Identities = 27/70 (38%), Positives = 32/70 (45%), Gaps = 12/70 (17%) Query: 6 TTPAPSSTPGFSTP---GPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAM 62 T P+P +P +TP G TP P + PSP GS P AT PL K G PT Sbjct: 1015 TPPSPKGSPA-ATPFPKGASTP-PAATPPSPKGS-PAAT----PLPK--GAPTTPAATLP 1065 Query: 63 KPPGAQGSQS 72 P G + S Sbjct: 1066 SPKGGPATPS 1075 Score = 30.0 bits (66), Expect = 0.42 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 12/72 (16%) Query: 5 PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGP---GATAPCRPLFKDFGPPTVGCMQA 61 PTTPA +TP G TP P G+ +P+ + P G A P G PT A Sbjct: 1149 PTTPA--ATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPK----GAPTT---PA 1199 Query: 62 MKPPGAQGSQST 73 PP +G +T Sbjct: 1200 ATPPSPKGGLAT 1211 Score = 30.0 bits (66), Expect = 0.42 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 12/72 (16%) Query: 5 PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGP---GATAPCRPLFKDFGPPTVGCMQA 61 PTTPA +TP G TP P G+ +P+ + P G A P G PT A Sbjct: 1172 PTTPA--ATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPK----GAPTT---PA 1222 Query: 62 MKPPGAQGSQST 73 PP +G +T Sbjct: 1223 ATPPSPKGGLAT 1234 Score = 30.0 bits (66), Expect = 0.42 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 3/61 (4%) Query: 5 PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKP 64 P TPAP P P +P VP+ S AP L P T+ +A+ P Sbjct: 1494 PATPAPMGAPTLPAVIPSSP---KEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIP 1550 Query: 65 P 65 P Sbjct: 1551 P 1551 Score = 29.6 bits (65), Expect = 0.54 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 13/77 (16%) Query: 5 PTTPAPSS--TPGFSTP-----GPGTPVPTGSVPSPSGSGPGAT-APCRPLFKDFGPPTV 56 P +P+P TP +TP GP TP P + P+ + P P P K G PT Sbjct: 931 PASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPK--GAPT- 987 Query: 57 GCMQAMKPPGAQGSQST 73 A PP +G +T Sbjct: 988 --PPAATPPSPKGGPAT 1002 Score = 28.9 bits (63), Expect = 0.93 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 6/44 (13%) Query: 5 PTTPA---PSSTPGFSTPG-PGTPVPTGSVP-SPSGSGPGATAP 43 PTTPA PS G +TP G P P + P SP G GP +P Sbjct: 1057 PTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKG-GPATPSP 1099 Score = 27.3 bits (59), Expect = 2.7 Identities = 13/32 (40%), Positives = 15/32 (46%) Query: 2 SYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSP 33 S K P+ TP GP TP P G+ SP Sbjct: 1609 SPKEAPTPPAVTPPSPEKGPATPAPKGTPTSP 1640 Score = 26.9 bits (58), Expect = 3.5 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Query: 2 SYKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQA 61 ++ PT P+P P TP TP+ V P P + P K+ GP T QA Sbjct: 853 THSPTPPSPKGAP---TPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKE-GPATPAPKQA 908 Score = 26.9 bits (58), Expect = 3.5 Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 14/106 (13%) Query: 8 PAPSSTPGFSTP---GPGTPVPTGS----VPSPSGS----GPGAT---APCRPLFKDFGP 53 PAP STP + P GP T + + P PS GP +T AP P+ KD Sbjct: 1688 PAPESTPIITAPTRKGPQTKKSSATSPPICPDPSAKNGSKGPLSTVAPAPLLPVQKDSSK 1747 Query: 54 PTVGCMQAMKPPGAQGSQSTYTELLLVTGEMGKGIRPTYAGSKSAA 99 G + P G + L K + + S SAA Sbjct: 1748 TAKGKDASHSPKGPLAPPESKASTPLTAAAFEKVLPKPESASVSAA 1793 Score = 26.6 bits (57), Expect = 4.6 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 11/70 (15%) Query: 5 PTTPAPSSTPGFST-PGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMK 63 P PS G +T P G P + P PS G AT P + G PT A Sbjct: 1106 PAATPPSPKGGLATPPHKGAPTTPAATP-PSPKGGLATPPPK------GAPTT---PAAT 1155 Query: 64 PPGAQGSQST 73 PP +G +T Sbjct: 1156 PPSPKGGLAT 1165 >gi|169171626 PREDICTED: hypothetical protein [Homo sapiens] Length = 205 Score = 34.7 bits (78), Expect = 0.017 Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 16/88 (18%) Query: 10 PSSTPGFSTPGPGTPVPTGSVPSPSGS----GPGATAPCRPLFKDFGPPTVGCMQAMKPP 65 PSS ++PGP P G V P GP + C PL GPP Sbjct: 23 PSSCLAAASPGPAPAQPDG-VSQPKAPFLNVGPSGPSSCLPLMACAGPPE---------- 71 Query: 66 GAQGSQSTYTELLLVTGEMGKGIRPTYA 93 A S+ +LL G G G+ PT A Sbjct: 72 -AARSRPRQAQLLPGVGPWGHGLCPTVA 98 >gi|89026075 PREDICTED: hypothetical protein [Homo sapiens] Length = 205 Score = 34.7 bits (78), Expect = 0.017 Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 16/88 (18%) Query: 10 PSSTPGFSTPGPGTPVPTGSVPSPSGS----GPGATAPCRPLFKDFGPPTVGCMQAMKPP 65 PSS ++PGP P G V P GP + C PL GPP Sbjct: 23 PSSCLAAASPGPAPAQPDG-VSQPKAPFLNVGPSGPSSCLPLMACAGPPE---------- 71 Query: 66 GAQGSQSTYTELLLVTGEMGKGIRPTYA 93 A S+ +LL G G G+ PT A Sbjct: 72 -AARSRPRQAQLLPGVGPWGHGLCPTVA 98 >gi|89025126 PREDICTED: hypothetical protein [Homo sapiens] Length = 205 Score = 34.7 bits (78), Expect = 0.017 Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 16/88 (18%) Query: 10 PSSTPGFSTPGPGTPVPTGSVPSPSGS----GPGATAPCRPLFKDFGPPTVGCMQAMKPP 65 PSS ++PGP P G V P GP + C PL GPP Sbjct: 23 PSSCLAAASPGPAPAQPDG-VSQPKAPFLNVGPSGPSSCLPLMACAGPPE---------- 71 Query: 66 GAQGSQSTYTELLLVTGEMGKGIRPTYA 93 A S+ +LL G G G+ PT A Sbjct: 72 -AARSRPRQAQLLPGVGPWGHGLCPTVA 98 >gi|239508901 PREDICTED: hypothetical protein [Homo sapiens] Length = 205 Score = 34.7 bits (78), Expect = 0.017 Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 16/88 (18%) Query: 10 PSSTPGFSTPGPGTPVPTGSVPSPSGS----GPGATAPCRPLFKDFGPPTVGCMQAMKPP 65 PSS ++PGP P G V P GP + C PL GPP Sbjct: 23 PSSCLAAASPGPAPAQPDG-VSQPKAPFLNVGPSGPSSCLPLMACAGPPE---------- 71 Query: 66 GAQGSQSTYTELLLVTGEMGKGIRPTYA 93 A S+ +LL G G G+ PT A Sbjct: 72 -AARSRPRQAQLLPGVGPWGHGLCPTVA 98 >gi|24497609 nucleoporin 62kDa [Homo sapiens] Length = 522 Score = 34.7 bits (78), Expect = 0.017 Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 21/94 (22%) Query: 2 SYKPTTPAP----SSTPGFSTPG---PGTPVPTGSVPS--PSGSGPGATAP--------- 43 S +PT PA +TP +T G P P PT ++ S PS ATAP Sbjct: 179 SAQPTAPATLPFTPATPAATTAGATQPAAPTPTATITSTGPSLFASIATAPTSSATTGLS 238 Query: 44 -CRPLFKDFGPPTVGCMQ-AMKPPGAQGSQSTYT 75 C P+ G PT G ++K PGA ST T Sbjct: 239 LCTPV-TTAGAPTAGTQGFSLKAPGAASGTSTTT 271 Score = 26.9 bits (58), Expect = 3.5 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 6 TTPAPSSTPG-FSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGP--PTVGCMQAM 62 T+ AP++T G FS G T P+G +G+ TAP F P T G Q Sbjct: 147 TSVAPATTSGGFSFTGGSTAQPSGFNIGSAGNSAQPTAPATLPFTPATPAATTAGATQPA 206 Query: 63 KP 64 P Sbjct: 207 AP 208 >gi|24497607 nucleoporin 62kDa [Homo sapiens] Length = 522 Score = 34.7 bits (78), Expect = 0.017 Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 21/94 (22%) Query: 2 SYKPTTPAP----SSTPGFSTPG---PGTPVPTGSVPS--PSGSGPGATAP--------- 43 S +PT PA +TP +T G P P PT ++ S PS ATAP Sbjct: 179 SAQPTAPATLPFTPATPAATTAGATQPAAPTPTATITSTGPSLFASIATAPTSSATTGLS 238 Query: 44 -CRPLFKDFGPPTVGCMQ-AMKPPGAQGSQSTYT 75 C P+ G PT G ++K PGA ST T Sbjct: 239 LCTPV-TTAGAPTAGTQGFSLKAPGAASGTSTTT 271 Score = 26.9 bits (58), Expect = 3.5 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 6 TTPAPSSTPG-FSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGP--PTVGCMQAM 62 T+ AP++T G FS G T P+G +G+ TAP F P T G Q Sbjct: 147 TSVAPATTSGGFSFTGGSTAQPSGFNIGSAGNSAQPTAPATLPFTPATPAATTAGATQPA 206 Query: 63 KP 64 P Sbjct: 207 AP 208 >gi|24497605 nucleoporin 62kDa [Homo sapiens] Length = 522 Score = 34.7 bits (78), Expect = 0.017 Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 21/94 (22%) Query: 2 SYKPTTPAP----SSTPGFSTPG---PGTPVPTGSVPS--PSGSGPGATAP--------- 43 S +PT PA +TP +T G P P PT ++ S PS ATAP Sbjct: 179 SAQPTAPATLPFTPATPAATTAGATQPAAPTPTATITSTGPSLFASIATAPTSSATTGLS 238 Query: 44 -CRPLFKDFGPPTVGCMQ-AMKPPGAQGSQSTYT 75 C P+ G PT G ++K PGA ST T Sbjct: 239 LCTPV-TTAGAPTAGTQGFSLKAPGAASGTSTTT 271 Score = 26.9 bits (58), Expect = 3.5 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 6 TTPAPSSTPG-FSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGP--PTVGCMQAM 62 T+ AP++T G FS G T P+G +G+ TAP F P T G Q Sbjct: 147 TSVAPATTSGGFSFTGGSTAQPSGFNIGSAGNSAQPTAPATLPFTPATPAATTAGATQPA 206 Query: 63 KP 64 P Sbjct: 207 AP 208 >gi|24497603 nucleoporin 62kDa [Homo sapiens] Length = 522 Score = 34.7 bits (78), Expect = 0.017 Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 21/94 (22%) Query: 2 SYKPTTPAP----SSTPGFSTPG---PGTPVPTGSVPS--PSGSGPGATAP--------- 43 S +PT PA +TP +T G P P PT ++ S PS ATAP Sbjct: 179 SAQPTAPATLPFTPATPAATTAGATQPAAPTPTATITSTGPSLFASIATAPTSSATTGLS 238 Query: 44 -CRPLFKDFGPPTVGCMQ-AMKPPGAQGSQSTYT 75 C P+ G PT G ++K PGA ST T Sbjct: 239 LCTPV-TTAGAPTAGTQGFSLKAPGAASGTSTTT 271 Score = 26.9 bits (58), Expect = 3.5 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 6 TTPAPSSTPG-FSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGP--PTVGCMQAM 62 T+ AP++T G FS G T P+G +G+ TAP F P T G Q Sbjct: 147 TSVAPATTSGGFSFTGGSTAQPSGFNIGSAGNSAQPTAPATLPFTPATPAATTAGATQPA 206 Query: 63 KP 64 P Sbjct: 207 AP 208 >gi|31543543 retinoic acid induced 17 [Homo sapiens] Length = 1067 Score = 34.7 bits (78), Expect = 0.017 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Query: 3 YKPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAM 62 Y P + P+ + P P P+ S + PG P +P + PPTV Q Sbjct: 418 YGPNSQFPTQPGQYPAPNPPRPLT-------SPNYPGQRMPSQPSSGQYPPPTVNMGQYY 470 Query: 63 KPPGAQGSQSTYT 75 KP G +T++ Sbjct: 471 KPEQFNGQNNTFS 483 Score = 28.1 bits (61), Expect = 1.6 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 4 KPTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMK 63 +P P P + S P PG P P +P S P +P + + F P M A+ Sbjct: 497 RPPRPVPVANYPHS-PVPGNPTPP---MTPGSSIPPYLSPSQDVKPPFPPDIKPNMSALP 552 Query: 64 PPGA 67 PP A Sbjct: 553 PPPA 556 >gi|23592232 mediator complex subunit 19 [Homo sapiens] Length = 194 Score = 34.3 bits (77), Expect = 0.022 Identities = 27/63 (42%), Positives = 29/63 (46%), Gaps = 19/63 (30%) Query: 8 PAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKPPGA 67 P P + GF GPG P P P P+G GPG TAP PPT A PPGA Sbjct: 15 PPPPTALGF---GPGKPPPPP--PPPAGGGPG-TAP---------PPTA----ATAPPGA 55 Query: 68 QGS 70 S Sbjct: 56 DKS 58 >gi|41281612 zinc finger protein 828 [Homo sapiens] Length = 812 Score = 34.3 bits (77), Expect = 0.022 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 2/47 (4%) Query: 1 MSYKPTTPAPSSTPGFSTPG-PGTPVPTGSVPSPSGSGPGATAPCRP 46 +S +P PAP+ +PG PG PG+P P S PS S SGP A P Sbjct: 296 VSPEPRRPAPAVSPGSWKPGPPGSPRPWKSNPSAS-SGPWKPAKPAP 341 Score = 30.4 bits (67), Expect = 0.32 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 10/62 (16%) Query: 3 YKPTTPAPSSTPG------FSTPGPGTPVPTGSVPSPSGSGPGATA----PCRPLFKDFG 52 +KP PAPS +PG +PGP P P+ S S S ++ P P G Sbjct: 334 WKPAKPAPSVSPGPWKPIPSVSPGPWKPTPSVSSASWKSSSVSPSSWKSPPASPESWKSG 393 Query: 53 PP 54 PP Sbjct: 394 PP 395 >gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] Length = 1464 Score = 33.9 bits (76), Expect = 0.029 Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 8/83 (9%) Query: 12 STPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKPPGAQGSQ 71 ST G S PGP P +P P G+ PG P + P G M PPG G Sbjct: 171 STGGISVPGPMGPSGPRGLPGPPGA-PGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKN 229 Query: 72 STYTELLLVTGEMGKGIRPTYAG 94 GE GK RP G Sbjct: 230 GD-------DGEAGKPGRPGERG 245 Score = 30.0 bits (66), Expect = 0.42 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 7/77 (9%) Query: 10 PSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKPPGAQG 69 P+ PG P PG P P G SP GP A AP P GP + + + Q Sbjct: 915 PAGRPGEVGP-PGPPGPAGEKGSPGADGP-AGAPGTP-----GPQGIAGQRGVVGLPGQR 967 Query: 70 SQSTYTELLLVTGEMGK 86 + + L +GE GK Sbjct: 968 GERGFPGLPGPSGEPGK 984 Score = 27.7 bits (60), Expect = 2.1 Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 3/72 (4%) Query: 8 PAPSSTPGF-STPGPGTPVPTGSVPSPSGSG--PGATAPCRPLFKDFGPPTVGCMQAMKP 64 P + PGF GP P G P P G+ PGA P VG P Sbjct: 403 PGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGP 462 Query: 65 PGAQGSQSTYTE 76 G +G + E Sbjct: 463 AGEEGKRGARGE 474 Score = 27.7 bits (60), Expect = 2.1 Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 9/71 (12%) Query: 8 PAPSSTPGFSTP-----GPGTPVPTGSVPSPSGSGP----GATAPCRPLFKDFGPPTVGC 58 P P GF+ P PG G + +GP G P P+ P G Sbjct: 805 PGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGA 864 Query: 59 MQAMKPPGAQG 69 + PPGA G Sbjct: 865 RGSAGPPGATG 875 Score = 26.2 bits (56), Expect = 6.0 Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 23/91 (25%) Query: 8 PAPSSTPGFS--TPGPGTPVPTGSVPSPSGSGPGATAPCRPLFKDFGPPTVGCMQAMKPP 65 P + PG T PG+P P G P +G RP GPP PP Sbjct: 529 PGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDG----RP-----GPP--------GPP 571 Query: 66 GAQGSQSTYTELLLVTGEMGKGIRPTYAGSK 96 GA+G ++ G G P AG + Sbjct: 572 GARGQAG----VMGFPGPKGAAGEPGKAGER 598 >gi|150417978 platelet glycoprotein Ib alpha polypeptide precursor [Homo sapiens] Length = 639 Score = 33.9 bits (76), Expect = 0.029 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 4/37 (10%) Query: 5 PTTPAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGAT 41 PTTP P+S P P P TP PT S P+PS + P T Sbjct: 408 PTTPEPTSEP---APSPTTPEPT-SEPAPSPTTPEPT 440 Score = 32.0 bits (71), Expect = 0.11 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Query: 8 PAPSSTPGFSTPGPGTPVPTGSVPSPSGSGPGATAPCRP 46 PAP+ T TP P TP PT S P+PS + P T+ P Sbjct: 395 PAPNMTTLEPTPSPTTPEPT-SEPAPSPTTPEPTSEPAP 432 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.311 0.132 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,854,477 Number of Sequences: 37866 Number of extensions: 517710 Number of successful extensions: 5879 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 292 Number of HSP's successfully gapped in prelim test: 566 Number of HSP's that attempted gapping in prelim test: 3509 Number of HSP's gapped (non-prelim): 2668 length of query: 109 length of database: 18,247,518 effective HSP length: 79 effective length of query: 30 effective length of database: 15,256,104 effective search space: 457683120 effective search space used: 457683120 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.