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Search of human proteins with 239743611
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743611 PREDICTED: hypothetical protein XP_002342905 [Homo
sapiens]
(119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749473 PREDICTED: hypothetical protein XP_002347063 [Homo ... 249 4e-67
gi|239743611 PREDICTED: hypothetical protein XP_002342905 [Homo ... 249 4e-67
gi|239754931 PREDICTED: hypothetical protein [Homo sapiens] 248 1e-66
gi|239755142 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|239749631 PREDICTED: hypothetical protein [Homo sapiens] 34 0.022
gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo ... 34 0.022
gi|239757987 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|239753102 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 31 0.19
gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens] 31 0.25
gi|169214094 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|169214487 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|169213441 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|222136611 poliovirus receptor-related 4 [Homo sapiens] 29 0.72
gi|148886654 polydom [Homo sapiens] 29 0.72
gi|239758086 PREDICTED: similar to double homeobox, 4 [Homo sapi... 29 0.94
gi|169160983 PREDICTED: hypothetical protein [Homo sapiens] 29 0.94
gi|89941470 ankyrin repeat domain 34 [Homo sapiens] 29 0.94
gi|169213067 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239756526 PREDICTED: hypothetical protein XP_002344924 [Homo ... 28 1.2
gi|239751053 PREDICTED: hypothetical protein XP_002347688 [Homo ... 28 1.2
gi|239745478 PREDICTED: hypothetical protein XP_002343503 [Homo ... 28 1.2
gi|239745467 PREDICTED: hypothetical protein XP_002343499 [Homo ... 28 1.2
gi|223941923 OTU domain containing 1 [Homo sapiens] 28 2.1
gi|239748460 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo ... 27 2.7
gi|148839350 hypothetical protein LOC25858 [Homo sapiens] 27 2.7
gi|9966903 mannosidase, alpha, class 1C, member 1 [Homo sapiens] 27 2.7
gi|7661806 mitochondrial ribosomal protein L15 [Homo sapiens] 27 2.7
gi|58331144 proline rich region 18 [Homo sapiens] 27 3.6
>gi|239749473 PREDICTED: hypothetical protein XP_002347063 [Homo
sapiens]
Length = 119
Score = 249 bits (635), Expect = 4e-67
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP 60
MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP
Sbjct: 1 MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP 60
Query: 61 VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDSC 119
VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDSC
Sbjct: 61 VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDSC 119
>gi|239743611 PREDICTED: hypothetical protein XP_002342905 [Homo
sapiens]
Length = 119
Score = 249 bits (635), Expect = 4e-67
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP 60
MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP
Sbjct: 1 MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP 60
Query: 61 VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDSC 119
VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDSC
Sbjct: 61 VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDSC 119
>gi|239754931 PREDICTED: hypothetical protein [Homo sapiens]
Length = 119
Score = 248 bits (632), Expect = 1e-66
Identities = 118/119 (99%), Positives = 119/119 (100%)
Query: 1 MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP 60
MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP
Sbjct: 1 MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP 60
Query: 61 VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDSC 119
VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRV+QIARGGPEARRQAGDSC
Sbjct: 61 VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVDQIARGGPEARRQAGDSC 119
>gi|239755142 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 37.4 bits (85), Expect = 0.003
Identities = 35/113 (30%), Positives = 43/113 (38%), Gaps = 15/113 (13%)
Query: 4 GWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLE----- 58
GW A+ SL P P + ++ RRG A R + PRLH G GRL
Sbjct: 76 GWSAALGSLPPPPAAACTALKPATRRGSCSAPLGPARRCSARRPRLHQGGAGRLAAGGAE 135
Query: 59 --EPVPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGP 109
E PN RG+ S R TG R+ P R + IA P
Sbjct: 136 AGERRSPN--------RGATSSLSPIARGAADTGVRSAAEDPPRRDGIAADRP 180
>gi|239749631 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/54 (37%), Positives = 25/54 (46%)
Query: 4 GWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRL 57
GW A+ SL P P + ++ RRG A R + PRLH G GRL
Sbjct: 76 GWSAALGSLPPPPAAACTALKPATRRGSCSAPLGPARRCSARRPRLHQGGAGRL 129
>gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo
sapiens]
Length = 217
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/54 (37%), Positives = 25/54 (46%)
Query: 4 GWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRL 57
GW A+ SL P P + ++ RRG A R + PRLH G GRL
Sbjct: 76 GWSAALGSLPPPPAAACTALKPATRRGSCSAPLGPARRCSARRPRLHQGGAGRL 129
>gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 445
Score = 31.2 bits (69), Expect = 0.19
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 9 VASLLPSPGN------SELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEPVP 62
V L PGN S +P + G GG+ ++ A +P R + RGR +P
Sbjct: 94 VTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAE 153
Query: 63 PNHL---PVGLSVRG--SQVLSSAGPRRCR 87
P L +G R QV +A RR R
Sbjct: 154 PGSLRPTSLGFPARAGQGQVQGAAPGRRLR 183
>gi|239753102 PREDICTED: hypothetical protein [Homo sapiens]
Length = 252
Score = 31.2 bits (69), Expect = 0.19
Identities = 25/75 (33%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 2 GSGWLTAVASLLPSP-----GNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGR 56
G GW T P G + LGRRG R G P L C GR
Sbjct: 9 GGGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGG-RGAPLLPCGAGGR 67
Query: 57 ----LEEPVPPNHLP 67
L++P PP HLP
Sbjct: 68 ALDRLDDPSPPPHLP 82
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 31.2 bits (69), Expect = 0.19
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 25 ALGRRGGRDWARN----EAGRDLEKPPRLHCSGRGRLEEPVP-PNHLPVGLSVRGSQVLS 79
A+ RR GR +N +AGR +++ P G+ +PVP P L V V Q++
Sbjct: 2855 AVKRRRGRPPKKNRSPADAGRGVDEAPSSTLKGKTNGADPVPGPETLIVADPVLEPQLIP 2914
Query: 80 SAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARR 113
P + NP+ P VE+ RG P R
Sbjct: 2915 GPQPLGPQPVHRPNPLLSP--VEKRRRGRPPKAR 2946
>gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]
Length = 860
Score = 30.8 bits (68), Expect = 0.25
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 16 PGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEPVPPNHLPVGLSVRGS 75
PG S+ V + RRGGR R AG + RL + P G RG+
Sbjct: 12 PGGSQGRVVRMKRRGGRGPRRGPAGGGEKALKRLKLAVE-EFVHATSEGEAPGGCEGRGA 70
Query: 76 QVLSSAGPRRCR--LTGTRNPVRGPRRVEQIARGGPE 110
V G R+ R L + +R RR+++ A GPE
Sbjct: 71 PVSFRPGGRKSRKELRKEKRHLRKARRLQRTA--GPE 105
>gi|169214094 PREDICTED: hypothetical protein [Homo sapiens]
Length = 222
Score = 30.4 bits (67), Expect = 0.32
Identities = 32/101 (31%), Positives = 37/101 (36%), Gaps = 25/101 (24%)
Query: 28 RRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEPVPPNHLPVGLSVRG-------SQVLSS 80
+ G R W + EK PRL V PNH +GLS R S L S
Sbjct: 30 KTGSRRWGK------AEKRPRLADESCDYQVTWVTPNHDGLGLSARPAARRRLESPALPS 83
Query: 81 AGPRRC------------RLTGTRNPVRGPRRVEQIARGGP 109
G RR R T P R + E+ ARGGP
Sbjct: 84 GGHRRYLPKRREVCVSKRRGTQAHQPGRPQGKAERPARGGP 124
>gi|169214487 PREDICTED: hypothetical protein [Homo sapiens]
Length = 222
Score = 30.4 bits (67), Expect = 0.32
Identities = 32/101 (31%), Positives = 37/101 (36%), Gaps = 25/101 (24%)
Query: 28 RRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEPVPPNHLPVGLSVRG-------SQVLSS 80
+ G R W + EK PRL V PNH +GLS R S L S
Sbjct: 30 KTGSRRWGK------AEKRPRLADESCDYQVTWVTPNHDGLGLSARPAARRRLESPALPS 83
Query: 81 AGPRRC------------RLTGTRNPVRGPRRVEQIARGGP 109
G RR R T P R + E+ ARGGP
Sbjct: 84 GGHRRYLPKRREVCVSKRRGTQAHQPGRPQGKAERPARGGP 124
>gi|169213441 PREDICTED: hypothetical protein [Homo sapiens]
Length = 222
Score = 30.4 bits (67), Expect = 0.32
Identities = 32/101 (31%), Positives = 37/101 (36%), Gaps = 25/101 (24%)
Query: 28 RRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEPVPPNHLPVGLSVRG-------SQVLSS 80
+ G R W + EK PRL V PNH +GLS R S L S
Sbjct: 30 KTGSRRWGK------AEKRPRLADESCDYQVTWVTPNHDGLGLSARPAARRRLESPALPS 83
Query: 81 AGPRRC------------RLTGTRNPVRGPRRVEQIARGGP 109
G RR R T P R + E+ ARGGP
Sbjct: 84 GGHRRYLPKRREVCVSKRRGTQAHQPGRPQGKAERPARGGP 124
>gi|222136611 poliovirus receptor-related 4 [Homo sapiens]
Length = 510
Score = 29.3 bits (64), Expect = 0.72
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 34 WARNEAGRDLEKPPRLHC--------SGRGRLEEPVPPNHLPVGLSVRGSQVLSSAGPRR 85
WAR +AG ++ LH + GR+E+P PP + G + + V + G
Sbjct: 67 WARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGEYE 126
Query: 86 CRLT 89
CR++
Sbjct: 127 CRVS 130
>gi|148886654 polydom [Homo sapiens]
Length = 3571
Score = 29.3 bits (64), Expect = 0.72
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 40 GRDLEKPPRLHCSGRGRLEEPVP---PNHLPVGLSVRGSQVLS 79
G LE P HC+ G PVP PN PV + + +LS
Sbjct: 3328 GYSLEGPSEAHCTENGTWSHPVPLCKPNPCPVPFVIPENALLS 3370
>gi|239758086 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 422
Score = 28.9 bits (63), Expect = 0.94
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 13 LPSPGNSELPVQALGRRGGRD--WARNEA---GRDLEKPPRLHCSGRGRLEEP--VPPNH 65
LP+P + LP +A GR R W+ E+ G +E+ P L + R RL +P +
Sbjct: 3 LPTPSDGTLPAEAWGRGRRRRLVWSPXESQALGASVEQNPYLGIATRERLTRAIVIPESR 62
Query: 66 LPVGLSVRGSQVL------SSAGPRRC 86
+ + S+ L S PRRC
Sbjct: 63 VQICFQNERSRQLRQHRWESRPRPRRC 89
>gi|169160983 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 28.9 bits (63), Expect = 0.94
Identities = 37/119 (31%), Positives = 44/119 (36%), Gaps = 32/119 (26%)
Query: 22 PVQALGRRGGR-----------DWARNEA--GRDLEKPPRLHCSGRGR-----------L 57
P + LGRR R D+ R E GR L PR G R L
Sbjct: 88 PPKPLGRRHWRREGQSSRQRTADFPREEGALGRRLRPSPRGKSGGGSRGGSRRALVLSSL 147
Query: 58 EEPVPPNHLPVGLSVRGSQVLSSA---GPRRCRLTGTRNPVRGPRRVEQIARGGPEARR 113
++P H + RGS V + G R R GTR P +G R E P ARR
Sbjct: 148 QDPPRRGHRCLRERRRGSGVAAGTLLRGRGRRREAGTRRPAQGARSEED-----PGARR 201
>gi|89941470 ankyrin repeat domain 34 [Homo sapiens]
Length = 496
Score = 28.9 bits (63), Expect = 0.94
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 13/84 (15%)
Query: 43 LEKPPRLHCSGRGRLE----------EPVPPNHLPVG---LSVRGSQVLSSAGPRRCRLT 89
L KPPR RL +PVPP G L+ + + + PR R
Sbjct: 231 LPKPPRHPPKPLKRLNSEPWGLVAPPQPVPPTEGRPGIERLTAEFNGLTLTGRPRLSRRH 290
Query: 90 GTRNPVRGPRRVEQIARGGPEARR 113
T P P E++ GGP +RR
Sbjct: 291 STEGPEDPPPWAEKVTSGGPLSRR 314
>gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 28.5 bits (62), Expect = 1.2
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 17/104 (16%)
Query: 25 ALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLE---EPVPPNHLPVGLSVRGSQ----V 77
A G G + + L++ PR H + RG+ + + P+ +P ++R SQ +
Sbjct: 9 APGLGGSKKTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIP-RAAIRQSQAPDLL 67
Query: 78 LSSAGPRRC----RLTGTRNPVRGPRRVEQIARGGP-EARRQAG 116
L+S G C G+ VRGP R RG P +A R AG
Sbjct: 68 LASRGITGCVNALGHRGSPEAVRGPGR----GRGPPNKAGRAAG 107
>gi|239756526 PREDICTED: hypothetical protein XP_002344924 [Homo
sapiens]
Length = 503
Score = 28.5 bits (62), Expect = 1.2
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 23/110 (20%)
Query: 12 LLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPP---RLHCSGRGRLEEPVPPNHLPV 68
LLP G L V R G + R+ G ++ +P +G + EP PP+ P+
Sbjct: 382 LLPGQGRLGLAV-----RTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDAQPL 436
Query: 69 GLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDS 118
GP R + + RGP+ Q++ P Q DS
Sbjct: 437 ------------TGPTRTSTWVSHHEARGPKNTNQLS---PRVTPQGPDS 471
>gi|239751053 PREDICTED: hypothetical protein XP_002347688 [Homo
sapiens]
Length = 441
Score = 28.5 bits (62), Expect = 1.2
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 23/110 (20%)
Query: 12 LLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPP---RLHCSGRGRLEEPVPPNHLPV 68
LLP G L V R G + R+ G ++ +P +G + EP PP+ P+
Sbjct: 320 LLPGQGRLGLAV-----RTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDAQPL 374
Query: 69 GLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDS 118
GP R + + RGP+ Q++ P Q DS
Sbjct: 375 ------------TGPTRTSTWVSHHEARGPKNTNQLS---PRVTPQGPDS 409
>gi|239745478 PREDICTED: hypothetical protein XP_002343503 [Homo
sapiens]
Length = 441
Score = 28.5 bits (62), Expect = 1.2
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 23/110 (20%)
Query: 12 LLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPP---RLHCSGRGRLEEPVPPNHLPV 68
LLP G L V R G + R+ G ++ +P +G + EP PP+ P+
Sbjct: 320 LLPGQGRLGLAV-----RTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDAQPL 374
Query: 69 GLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDS 118
GP R + + RGP+ Q++ P Q DS
Sbjct: 375 ------------TGPTRTSTWVSHHEARGPKNTNQLS---PRVTPQGPDS 409
>gi|239745467 PREDICTED: hypothetical protein XP_002343499 [Homo
sapiens]
Length = 393
Score = 28.5 bits (62), Expect = 1.2
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 23/110 (20%)
Query: 12 LLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPP---RLHCSGRGRLEEPVPPNHLPV 68
LLP G L V R G + R+ G ++ +P +G + EP PP+ P+
Sbjct: 272 LLPGQGRLGLAV-----RTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDAQPL 326
Query: 69 GLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDS 118
GP R + + RGP+ Q++ P Q DS
Sbjct: 327 ------------TGPTRTSTWVSHHEARGPKNTNQLS---PRVTPQGPDS 361
>gi|223941923 OTU domain containing 1 [Homo sapiens]
Length = 481
Score = 27.7 bits (60), Expect = 2.1
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 14/109 (12%)
Query: 12 LLPSPGNSELPVQALGRRGGRDWARNEAGR-DLEKPPRLHCSGRGRLEEPVPPNHLPVGL 70
L P+P P RRG W E R D +P L + G P + +
Sbjct: 149 LAPAPAAPVPP-----RRGSSAWLLEELLRPDCPEPAGLDATREG------PDRNFRLSE 197
Query: 71 SVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDSC 119
+ GP G+ +P GP E +A GP + GD C
Sbjct: 198 HRQALAAAKHRGP--AATPGSPDPGPGPWGEEHLAERGPRGWERGGDRC 244
>gi|239748460 PREDICTED: hypothetical protein [Homo sapiens]
Length = 272
Score = 27.3 bits (59), Expect = 2.7
Identities = 27/98 (27%), Positives = 32/98 (32%), Gaps = 6/98 (6%)
Query: 4 GWLTAVASLLPSPGNSEL----PVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEE 59
GW VA P+ L PVQ G W R P GR
Sbjct: 53 GWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPAS 112
Query: 60 PVPP--NHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPV 95
PP + LP VLS+ GP+ +G R V
Sbjct: 113 ASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAV 150
>gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo
sapiens]
Length = 272
Score = 27.3 bits (59), Expect = 2.7
Identities = 27/98 (27%), Positives = 32/98 (32%), Gaps = 6/98 (6%)
Query: 4 GWLTAVASLLPSPGNSEL----PVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEE 59
GW VA P+ L PVQ G W R P GR
Sbjct: 53 GWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPAS 112
Query: 60 PVPP--NHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPV 95
PP + LP VLS+ GP+ +G R V
Sbjct: 113 ASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAV 150
>gi|148839350 hypothetical protein LOC25858 [Homo sapiens]
Length = 200
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 37 NEAGRDLEKPPRLHCSGRGRLEEPVPPNHLP 67
+E GR++ K H GRG L+E +H P
Sbjct: 53 DEEGRNISKTRGWHSPGRGSLDEGYKASHKP 83
>gi|9966903 mannosidase, alpha, class 1C, member 1 [Homo sapiens]
Length = 630
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 58 EEPVPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGD 117
E+ PPN P + S A PRR + R GPR ARG + GD
Sbjct: 77 EQEPPPNPAPAAPAPGEDDPSSWASPRRRKGGLRRTRPTGPREEATAARGNSIPASRPGD 136
>gi|7661806 mitochondrial ribosomal protein L15 [Homo sapiens]
Length = 296
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 8 AVASLLPSPGNSELPVQALGRRGGRDWARNEAG-RDLEKPPRLHCSG 53
++A+L P+PG+ + + GRR GR R G R PRL G
Sbjct: 23 SLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRGTRPRLGFEG 69
>gi|58331144 proline rich region 18 [Homo sapiens]
Length = 295
Score = 26.9 bits (58), Expect = 3.6
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 43 LEKPPRLHCSGRGRLEEPVPPNHLPVGLSVRGSQVLSSAGPR 84
L++PP G R + P PP P L R + A PR
Sbjct: 53 LKRPPARRGPGLDRTQPPAPPGVSPQALPSRARAPATCAPPR 94
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,172,571
Number of Sequences: 37866
Number of extensions: 330059
Number of successful extensions: 1004
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 971
Number of HSP's gapped (non-prelim): 83
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.