Guide to the Human Genome
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Search of human proteins with 239743611

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743611 PREDICTED: hypothetical protein XP_002342905 [Homo
sapiens]
         (119 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239749473 PREDICTED: hypothetical protein XP_002347063 [Homo ...   249   4e-67
gi|239743611 PREDICTED: hypothetical protein XP_002342905 [Homo ...   249   4e-67
gi|239754931 PREDICTED: hypothetical protein [Homo sapiens]           248   1e-66
gi|239755142 PREDICTED: hypothetical protein [Homo sapiens]            37   0.003
gi|239749631 PREDICTED: hypothetical protein [Homo sapiens]            34   0.022
gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo ...    34   0.022
gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]            31   0.19 
gi|239753102 PREDICTED: hypothetical protein [Homo sapiens]            31   0.19 
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]         31   0.19 
gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]       31   0.25 
gi|169214094 PREDICTED: hypothetical protein [Homo sapiens]            30   0.32 
gi|169214487 PREDICTED: hypothetical protein [Homo sapiens]            30   0.32 
gi|169213441 PREDICTED: hypothetical protein [Homo sapiens]            30   0.32 
gi|222136611 poliovirus receptor-related 4 [Homo sapiens]              29   0.72 
gi|148886654 polydom [Homo sapiens]                                    29   0.72 
gi|239758086 PREDICTED: similar to double homeobox, 4 [Homo sapi...    29   0.94 
gi|169160983 PREDICTED: hypothetical protein [Homo sapiens]            29   0.94 
gi|89941470 ankyrin repeat domain 34 [Homo sapiens]                    29   0.94 
gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]            28   1.2  
gi|239756526 PREDICTED: hypothetical protein XP_002344924 [Homo ...    28   1.2  
gi|239751053 PREDICTED: hypothetical protein XP_002347688 [Homo ...    28   1.2  
gi|239745478 PREDICTED: hypothetical protein XP_002343503 [Homo ...    28   1.2  
gi|239745467 PREDICTED: hypothetical protein XP_002343499 [Homo ...    28   1.2  
gi|223941923 OTU domain containing 1 [Homo sapiens]                    28   2.1  
gi|239748460 PREDICTED: hypothetical protein [Homo sapiens]            27   2.7  
gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo ...    27   2.7  
gi|148839350 hypothetical protein LOC25858 [Homo sapiens]              27   2.7  
gi|9966903 mannosidase, alpha, class 1C, member 1 [Homo sapiens]       27   2.7  
gi|7661806 mitochondrial ribosomal protein L15 [Homo sapiens]          27   2.7  
gi|58331144 proline rich region 18 [Homo sapiens]                      27   3.6  

>gi|239749473 PREDICTED: hypothetical protein XP_002347063 [Homo
           sapiens]
          Length = 119

 Score =  249 bits (635), Expect = 4e-67
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP 60
           MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP
Sbjct: 1   MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP 60

Query: 61  VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDSC 119
           VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDSC
Sbjct: 61  VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDSC 119


>gi|239743611 PREDICTED: hypothetical protein XP_002342905 [Homo
           sapiens]
          Length = 119

 Score =  249 bits (635), Expect = 4e-67
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP 60
           MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP
Sbjct: 1   MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP 60

Query: 61  VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDSC 119
           VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDSC
Sbjct: 61  VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDSC 119


>gi|239754931 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 119

 Score =  248 bits (632), Expect = 1e-66
 Identities = 118/119 (99%), Positives = 119/119 (100%)

Query: 1   MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP 60
           MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP
Sbjct: 1   MGSGWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEP 60

Query: 61  VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDSC 119
           VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRV+QIARGGPEARRQAGDSC
Sbjct: 61  VPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVDQIARGGPEARRQAGDSC 119


>gi|239755142 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 219

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 35/113 (30%), Positives = 43/113 (38%), Gaps = 15/113 (13%)

Query: 4   GWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLE----- 58
           GW  A+ SL P P  +   ++   RRG        A R   + PRLH  G GRL      
Sbjct: 76  GWSAALGSLPPPPAAACTALKPATRRGSCSAPLGPARRCSARRPRLHQGGAGRLAAGGAE 135

Query: 59  --EPVPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGP 109
             E   PN        RG+    S   R    TG R+    P R + IA   P
Sbjct: 136 AGERRSPN--------RGATSSLSPIARGAADTGVRSAAEDPPRRDGIAADRP 180


>gi|239749631 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 217

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 20/54 (37%), Positives = 25/54 (46%)

Query: 4   GWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRL 57
           GW  A+ SL P P  +   ++   RRG        A R   + PRLH  G GRL
Sbjct: 76  GWSAALGSLPPPPAAACTALKPATRRGSCSAPLGPARRCSARRPRLHQGGAGRL 129


>gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo
           sapiens]
          Length = 217

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 20/54 (37%), Positives = 25/54 (46%)

Query: 4   GWLTAVASLLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRL 57
           GW  A+ SL P P  +   ++   RRG        A R   + PRLH  G GRL
Sbjct: 76  GWSAALGSLPPPPAAACTALKPATRRGSCSAPLGPARRCSARRPRLHQGGAGRL 129


>gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 445

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 11/90 (12%)

Query: 9   VASLLPSPGN------SELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEPVP 62
           V  L   PGN      S +P +  G  GG+   ++ A     +P R   + RGR  +P  
Sbjct: 94  VTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAE 153

Query: 63  PNHL---PVGLSVRG--SQVLSSAGPRRCR 87
           P  L    +G   R    QV  +A  RR R
Sbjct: 154 PGSLRPTSLGFPARAGQGQVQGAAPGRRLR 183


>gi|239753102 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 252

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 25/75 (33%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 2  GSGWLTAVASLLPSP-----GNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGR 56
          G GW T        P     G     +  LGRRG R       G      P L C   GR
Sbjct: 9  GGGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGG-RGAPLLPCGAGGR 67

Query: 57 ----LEEPVPPNHLP 67
              L++P PP HLP
Sbjct: 68 ALDRLDDPSPPPHLP 82


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 25   ALGRRGGRDWARN----EAGRDLEKPPRLHCSGRGRLEEPVP-PNHLPVGLSVRGSQVLS 79
            A+ RR GR   +N    +AGR +++ P     G+    +PVP P  L V   V   Q++ 
Sbjct: 2855 AVKRRRGRPPKKNRSPADAGRGVDEAPSSTLKGKTNGADPVPGPETLIVADPVLEPQLIP 2914

Query: 80   SAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARR 113
               P   +     NP+  P  VE+  RG P   R
Sbjct: 2915 GPQPLGPQPVHRPNPLLSP--VEKRRRGRPPKAR 2946


>gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]
          Length = 860

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 16  PGNSELPVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEPVPPNHLPVGLSVRGS 75
           PG S+  V  + RRGGR   R  AG   +   RL  +              P G   RG+
Sbjct: 12  PGGSQGRVVRMKRRGGRGPRRGPAGGGEKALKRLKLAVE-EFVHATSEGEAPGGCEGRGA 70

Query: 76  QVLSSAGPRRCR--LTGTRNPVRGPRRVEQIARGGPE 110
            V    G R+ R  L   +  +R  RR+++ A  GPE
Sbjct: 71  PVSFRPGGRKSRKELRKEKRHLRKARRLQRTA--GPE 105


>gi|169214094 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 222

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 32/101 (31%), Positives = 37/101 (36%), Gaps = 25/101 (24%)

Query: 28  RRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEPVPPNHLPVGLSVRG-------SQVLSS 80
           + G R W +       EK PRL           V PNH  +GLS R        S  L S
Sbjct: 30  KTGSRRWGK------AEKRPRLADESCDYQVTWVTPNHDGLGLSARPAARRRLESPALPS 83

Query: 81  AGPRRC------------RLTGTRNPVRGPRRVEQIARGGP 109
            G RR             R T    P R   + E+ ARGGP
Sbjct: 84  GGHRRYLPKRREVCVSKRRGTQAHQPGRPQGKAERPARGGP 124


>gi|169214487 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 222

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 32/101 (31%), Positives = 37/101 (36%), Gaps = 25/101 (24%)

Query: 28  RRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEPVPPNHLPVGLSVRG-------SQVLSS 80
           + G R W +       EK PRL           V PNH  +GLS R        S  L S
Sbjct: 30  KTGSRRWGK------AEKRPRLADESCDYQVTWVTPNHDGLGLSARPAARRRLESPALPS 83

Query: 81  AGPRRC------------RLTGTRNPVRGPRRVEQIARGGP 109
            G RR             R T    P R   + E+ ARGGP
Sbjct: 84  GGHRRYLPKRREVCVSKRRGTQAHQPGRPQGKAERPARGGP 124


>gi|169213441 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 222

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 32/101 (31%), Positives = 37/101 (36%), Gaps = 25/101 (24%)

Query: 28  RRGGRDWARNEAGRDLEKPPRLHCSGRGRLEEPVPPNHLPVGLSVRG-------SQVLSS 80
           + G R W +       EK PRL           V PNH  +GLS R        S  L S
Sbjct: 30  KTGSRRWGK------AEKRPRLADESCDYQVTWVTPNHDGLGLSARPAARRRLESPALPS 83

Query: 81  AGPRRC------------RLTGTRNPVRGPRRVEQIARGGP 109
            G RR             R T    P R   + E+ ARGGP
Sbjct: 84  GGHRRYLPKRREVCVSKRRGTQAHQPGRPQGKAERPARGGP 124


>gi|222136611 poliovirus receptor-related 4 [Homo sapiens]
          Length = 510

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 34  WARNEAGRDLEKPPRLHC--------SGRGRLEEPVPPNHLPVGLSVRGSQVLSSAGPRR 85
           WAR +AG   ++   LH         +  GR+E+P PP +   G  +  + V +  G   
Sbjct: 67  WARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGEYE 126

Query: 86  CRLT 89
           CR++
Sbjct: 127 CRVS 130


>gi|148886654 polydom [Homo sapiens]
          Length = 3571

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 40   GRDLEKPPRLHCSGRGRLEEPVP---PNHLPVGLSVRGSQVLS 79
            G  LE P   HC+  G    PVP   PN  PV   +  + +LS
Sbjct: 3328 GYSLEGPSEAHCTENGTWSHPVPLCKPNPCPVPFVIPENALLS 3370


>gi|239758086 PREDICTED: similar to double homeobox, 4 [Homo
          sapiens]
          Length = 422

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 13/87 (14%)

Query: 13 LPSPGNSELPVQALGRRGGRD--WARNEA---GRDLEKPPRLHCSGRGRLEEP--VPPNH 65
          LP+P +  LP +A GR   R   W+  E+   G  +E+ P L  + R RL     +P + 
Sbjct: 3  LPTPSDGTLPAEAWGRGRRRRLVWSPXESQALGASVEQNPYLGIATRERLTRAIVIPESR 62

Query: 66 LPVGLSVRGSQVL------SSAGPRRC 86
          + +      S+ L      S   PRRC
Sbjct: 63 VQICFQNERSRQLRQHRWESRPRPRRC 89


>gi|169160983 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 261

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 37/119 (31%), Positives = 44/119 (36%), Gaps = 32/119 (26%)

Query: 22  PVQALGRRGGR-----------DWARNEA--GRDLEKPPRLHCSGRGR-----------L 57
           P + LGRR  R           D+ R E   GR L   PR    G  R           L
Sbjct: 88  PPKPLGRRHWRREGQSSRQRTADFPREEGALGRRLRPSPRGKSGGGSRGGSRRALVLSSL 147

Query: 58  EEPVPPNHLPVGLSVRGSQVLSSA---GPRRCRLTGTRNPVRGPRRVEQIARGGPEARR 113
           ++P    H  +    RGS V +     G  R R  GTR P +G R  E      P ARR
Sbjct: 148 QDPPRRGHRCLRERRRGSGVAAGTLLRGRGRRREAGTRRPAQGARSEED-----PGARR 201


>gi|89941470 ankyrin repeat domain 34 [Homo sapiens]
          Length = 496

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 13/84 (15%)

Query: 43  LEKPPRLHCSGRGRLE----------EPVPPNHLPVG---LSVRGSQVLSSAGPRRCRLT 89
           L KPPR       RL           +PVPP     G   L+   + +  +  PR  R  
Sbjct: 231 LPKPPRHPPKPLKRLNSEPWGLVAPPQPVPPTEGRPGIERLTAEFNGLTLTGRPRLSRRH 290

Query: 90  GTRNPVRGPRRVEQIARGGPEARR 113
            T  P   P   E++  GGP +RR
Sbjct: 291 STEGPEDPPPWAEKVTSGGPLSRR 314


>gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 303

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 17/104 (16%)

Query: 25  ALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLE---EPVPPNHLPVGLSVRGSQ----V 77
           A G  G +        + L++ PR H + RG+ +     + P+ +P   ++R SQ    +
Sbjct: 9   APGLGGSKKTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIP-RAAIRQSQAPDLL 67

Query: 78  LSSAGPRRC----RLTGTRNPVRGPRRVEQIARGGP-EARRQAG 116
           L+S G   C       G+   VRGP R     RG P +A R AG
Sbjct: 68  LASRGITGCVNALGHRGSPEAVRGPGR----GRGPPNKAGRAAG 107


>gi|239756526 PREDICTED: hypothetical protein XP_002344924 [Homo
           sapiens]
          Length = 503

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 23/110 (20%)

Query: 12  LLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPP---RLHCSGRGRLEEPVPPNHLPV 68
           LLP  G   L V     R G +  R+  G ++ +P        +G  +  EP PP+  P+
Sbjct: 382 LLPGQGRLGLAV-----RTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDAQPL 436

Query: 69  GLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDS 118
                        GP R     + +  RGP+   Q++   P    Q  DS
Sbjct: 437 ------------TGPTRTSTWVSHHEARGPKNTNQLS---PRVTPQGPDS 471


>gi|239751053 PREDICTED: hypothetical protein XP_002347688 [Homo
           sapiens]
          Length = 441

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 23/110 (20%)

Query: 12  LLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPP---RLHCSGRGRLEEPVPPNHLPV 68
           LLP  G   L V     R G +  R+  G ++ +P        +G  +  EP PP+  P+
Sbjct: 320 LLPGQGRLGLAV-----RTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDAQPL 374

Query: 69  GLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDS 118
                        GP R     + +  RGP+   Q++   P    Q  DS
Sbjct: 375 ------------TGPTRTSTWVSHHEARGPKNTNQLS---PRVTPQGPDS 409


>gi|239745478 PREDICTED: hypothetical protein XP_002343503 [Homo
           sapiens]
          Length = 441

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 23/110 (20%)

Query: 12  LLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPP---RLHCSGRGRLEEPVPPNHLPV 68
           LLP  G   L V     R G +  R+  G ++ +P        +G  +  EP PP+  P+
Sbjct: 320 LLPGQGRLGLAV-----RTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDAQPL 374

Query: 69  GLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDS 118
                        GP R     + +  RGP+   Q++   P    Q  DS
Sbjct: 375 ------------TGPTRTSTWVSHHEARGPKNTNQLS---PRVTPQGPDS 409


>gi|239745467 PREDICTED: hypothetical protein XP_002343499 [Homo
           sapiens]
          Length = 393

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 23/110 (20%)

Query: 12  LLPSPGNSELPVQALGRRGGRDWARNEAGRDLEKPP---RLHCSGRGRLEEPVPPNHLPV 68
           LLP  G   L V     R G +  R+  G ++ +P        +G  +  EP PP+  P+
Sbjct: 272 LLPGQGRLGLAV-----RTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDAQPL 326

Query: 69  GLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDS 118
                        GP R     + +  RGP+   Q++   P    Q  DS
Sbjct: 327 ------------TGPTRTSTWVSHHEARGPKNTNQLS---PRVTPQGPDS 361


>gi|223941923 OTU domain containing 1 [Homo sapiens]
          Length = 481

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 12  LLPSPGNSELPVQALGRRGGRDWARNEAGR-DLEKPPRLHCSGRGRLEEPVPPNHLPVGL 70
           L P+P     P     RRG   W   E  R D  +P  L  +  G      P  +  +  
Sbjct: 149 LAPAPAAPVPP-----RRGSSAWLLEELLRPDCPEPAGLDATREG------PDRNFRLSE 197

Query: 71  SVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGDSC 119
             +        GP      G+ +P  GP   E +A  GP    + GD C
Sbjct: 198 HRQALAAAKHRGP--AATPGSPDPGPGPWGEEHLAERGPRGWERGGDRC 244


>gi|239748460 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 272

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 27/98 (27%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 4   GWLTAVASLLPSPGNSEL----PVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEE 59
           GW   VA   P+     L    PVQ     G   W R         P        GR   
Sbjct: 53  GWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPAS 112

Query: 60  PVPP--NHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPV 95
             PP  + LP         VLS+ GP+    +G R  V
Sbjct: 113 ASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAV 150


>gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo
           sapiens]
          Length = 272

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 27/98 (27%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 4   GWLTAVASLLPSPGNSEL----PVQALGRRGGRDWARNEAGRDLEKPPRLHCSGRGRLEE 59
           GW   VA   P+     L    PVQ     G   W R         P        GR   
Sbjct: 53  GWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPAS 112

Query: 60  PVPP--NHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPV 95
             PP  + LP         VLS+ GP+    +G R  V
Sbjct: 113 ASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAV 150


>gi|148839350 hypothetical protein LOC25858 [Homo sapiens]
          Length = 200

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 37 NEAGRDLEKPPRLHCSGRGRLEEPVPPNHLP 67
          +E GR++ K    H  GRG L+E    +H P
Sbjct: 53 DEEGRNISKTRGWHSPGRGSLDEGYKASHKP 83


>gi|9966903 mannosidase, alpha, class 1C, member 1 [Homo sapiens]
          Length = 630

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 19/60 (31%), Positives = 23/60 (38%)

Query: 58  EEPVPPNHLPVGLSVRGSQVLSSAGPRRCRLTGTRNPVRGPRRVEQIARGGPEARRQAGD 117
           E+  PPN  P   +       S A PRR +    R    GPR     ARG      + GD
Sbjct: 77  EQEPPPNPAPAAPAPGEDDPSSWASPRRRKGGLRRTRPTGPREEATAARGNSIPASRPGD 136


>gi|7661806 mitochondrial ribosomal protein L15 [Homo sapiens]
          Length = 296

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 8  AVASLLPSPGNSELPVQALGRRGGRDWARNEAG-RDLEKPPRLHCSG 53
          ++A+L P+PG+ +   +  GRR GR   R   G R     PRL   G
Sbjct: 23 SLANLKPNPGSKKPERRPRGRRRGRKCGRGHKGERQRGTRPRLGFEG 69


>gi|58331144 proline rich region 18 [Homo sapiens]
          Length = 295

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 14/42 (33%), Positives = 18/42 (42%)

Query: 43 LEKPPRLHCSGRGRLEEPVPPNHLPVGLSVRGSQVLSSAGPR 84
          L++PP     G  R + P PP   P  L  R     + A PR
Sbjct: 53 LKRPPARRGPGLDRTQPPAPPGVSPQALPSRARAPATCAPPR 94


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,172,571
Number of Sequences: 37866
Number of extensions: 330059
Number of successful extensions: 1004
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 971
Number of HSP's gapped (non-prelim): 83
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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