Guide to the Human Genome
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Name: LOC100288748 Sequence: fasta or formatted (119aa) NCBI GI: 239743611
Description:

PREDICTED: hypothetical protein XP_002342905

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6          9           1
 C cysteine            2.5          3           1
 D aspartate           2.5          3           1
 E glutamate           5.9          7           2
 F phenylalanine       0.0          0           0
 G glycine            14.3         17           2
 H histidine           1.7          2           1
 I isoleucine          0.8          1           1
 K lysine              0.8          1           1
 L leucine            10.1         12           2
 M methionine          0.8          1           1
 N asparagine          3.4          4           1
 P proline            10.9         13           2
 Q glutamine           3.4          4           1
 R arginine           16.0         19           2
 S serine              8.4         10           2
 T threonine           2.5          3           1
 V valine              6.7          8           1
 W tryptophan          1.7          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342905 
LOC100290319          1.000   PREDICTED: hypothetical protein XP_002347063 
LOC100293081          0.996   PREDICTED: hypothetical protein 
LOC100292591          0.054   PREDICTED: hypothetical protein 
LOC100287994          0.040   PREDICTED: hypothetical protein 
LOC100287994          0.040   PREDICTED: hypothetical protein XP_002342988 
LOC100292184          0.027   PREDICTED: hypothetical protein 
LOC100292909          0.027   PREDICTED: hypothetical protein 
SRCAP                 0.027   Snf2-related CBP activator protein 
NOM1                  0.027   nucleolar protein with MIF4G domain 1 
LOC100130084          0.022   PREDICTED: hypothetical protein 
LOC100130084          0.022   PREDICTED: hypothetical protein 
LOC100130084          0.022   PREDICTED: hypothetical protein 
PVRL4                 0.018   poliovirus receptor-related 4 
SVEP1                 0.018   polydom 
HPX-2                 0.018   PREDICTED: similar to double homeobox, 4 
LOC729199             0.018   PREDICTED: hypothetical protein 
ANKRD34A              0.018   ankyrin repeat domain 34 
LOC645321             0.013   PREDICTED: hypothetical protein 
LOC100291827          0.013   PREDICTED: hypothetical protein XP_002344924 
LOC100289691          0.013   PREDICTED: hypothetical protein XP_002347688 
LOC100288546          0.013   PREDICTED: hypothetical protein XP_002343503 
LOC100288341          0.013   PREDICTED: hypothetical protein XP_002343499 
OTUD1                 0.013   OTU domain containing 1 
LOC100287121          0.009   PREDICTED: hypothetical protein 
LOC100287121          0.009   PREDICTED: hypothetical protein XP_002342511 
C11orf20              0.009   hypothetical protein LOC25858 
MAN1C1                0.009   mannosidase, alpha, class 1C, member 1 
MRPL15                0.009   mitochondrial ribosomal protein L15 
PRR18                 0.009   proline rich region 18 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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