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Search of human proteins with 239743424
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743424 PREDICTED: hypothetical protein XP_002342853 [Homo
sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749332 PREDICTED: hypothetical protein XP_002347002 [Homo ... 388 e-108
gi|239743424 PREDICTED: hypothetical protein XP_002342853 [Homo ... 388 e-108
gi|7657520 ring finger protein 11 [Homo sapiens] 182 1e-46
gi|5174653 ring finger protein 6 [Homo sapiens] 62 3e-10
gi|150378447 zinc and ring finger 3 [Homo sapiens] 62 3e-10
gi|34305295 ring finger protein 6 [Homo sapiens] 62 3e-10
gi|34305293 ring finger protein 6 [Homo sapiens] 62 3e-10
gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens] 61 5e-10
gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens] 61 5e-10
gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens] 61 5e-10
gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens] 61 5e-10
gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens] 61 5e-10
gi|7662486 ring finger protein 44 [Homo sapiens] 60 1e-09
gi|58331204 ring finger protein 150 [Homo sapiens] 59 2e-09
gi|29789407 ring finger protein 149 [Homo sapiens] 59 3e-09
gi|37595553 ring finger protein 111 [Homo sapiens] 59 3e-09
gi|29788758 ring finger protein 130 [Homo sapiens] 58 5e-09
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 57 7e-09
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 57 7e-09
gi|21040269 ring finger protein 133 [Homo sapiens] 57 9e-09
gi|37675277 ring finger protein 148 [Homo sapiens] 57 9e-09
gi|14149702 ring finger protein 167 [Homo sapiens] 57 1e-08
gi|34577087 ring finger protein 13 [Homo sapiens] 56 2e-08
gi|6005864 ring finger protein 13 [Homo sapiens] 56 2e-08
gi|57165361 ring finger protein 165 [Homo sapiens] 56 2e-08
gi|21539663 praja 1 isoform c [Homo sapiens] 55 3e-08
gi|74048537 praja 1 isoform b [Homo sapiens] 55 3e-08
gi|41281725 praja 1 isoform a [Homo sapiens] 55 3e-08
gi|63025220 ring finger protein 215 [Homo sapiens] 55 4e-08
gi|56711322 ring finger protein 43 [Homo sapiens] 54 7e-08
>gi|239749332 PREDICTED: hypothetical protein XP_002347002 [Homo
sapiens]
Length = 183
Score = 388 bits (996), Expect = e-108
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MGNCLRRPTSDDTIVQPSTGQDLRPLLPHMEQAPVPVYHPAPGQPLLAILLTEEEQVRTA 60
MGNCLRRPTSDDTIVQPSTGQDLRPLLPHMEQAPVPVYHPAPGQPLLAILLTEEEQVRTA
Sbjct: 1 MGNCLRRPTSDDTIVQPSTGQDLRPLLPHMEQAPVPVYHPAPGQPLLAILLTEEEQVRTA 60
Query: 61 QRLSLLQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLL 120
QRLSLLQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLL
Sbjct: 61 QRLSLLQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLL 120
Query: 121 RSFTCPYCRGPVDAALSTSLGQTGGHFALIPEAVPLLKAAFCGSLDCAPSEEDLQTSASS 180
RSFTCPYCRGPVDAALSTSLGQTGGHFALIPEAVPLLKAAFCGSLDCAPSEEDLQTSASS
Sbjct: 121 RSFTCPYCRGPVDAALSTSLGQTGGHFALIPEAVPLLKAAFCGSLDCAPSEEDLQTSASS 180
Query: 181 CMT 183
CMT
Sbjct: 181 CMT 183
>gi|239743424 PREDICTED: hypothetical protein XP_002342853 [Homo
sapiens]
Length = 183
Score = 388 bits (996), Expect = e-108
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MGNCLRRPTSDDTIVQPSTGQDLRPLLPHMEQAPVPVYHPAPGQPLLAILLTEEEQVRTA 60
MGNCLRRPTSDDTIVQPSTGQDLRPLLPHMEQAPVPVYHPAPGQPLLAILLTEEEQVRTA
Sbjct: 1 MGNCLRRPTSDDTIVQPSTGQDLRPLLPHMEQAPVPVYHPAPGQPLLAILLTEEEQVRTA 60
Query: 61 QRLSLLQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLL 120
QRLSLLQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLL
Sbjct: 61 QRLSLLQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLL 120
Query: 121 RSFTCPYCRGPVDAALSTSLGQTGGHFALIPEAVPLLKAAFCGSLDCAPSEEDLQTSASS 180
RSFTCPYCRGPVDAALSTSLGQTGGHFALIPEAVPLLKAAFCGSLDCAPSEEDLQTSASS
Sbjct: 121 RSFTCPYCRGPVDAALSTSLGQTGGHFALIPEAVPLLKAAFCGSLDCAPSEEDLQTSASS 180
Query: 181 CMT 183
CMT
Sbjct: 181 CMT 183
>gi|7657520 ring finger protein 11 [Homo sapiens]
Length = 154
Score = 182 bits (462), Expect = 1e-46
Identities = 89/150 (59%), Positives = 107/150 (71%), Gaps = 11/150 (7%)
Query: 1 MGNCLRRPTSDD-TIVQPS----------TGQDLRPLLPHMEQAPVPVYHPAPGQPLLAI 49
MGNCL+ PTSDD +++ S T D P P+ EQ PVPVYHP P Q LA
Sbjct: 1 MGNCLKSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLAT 60
Query: 50 LLTEEEQVRTAQRLSLLQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHF 109
LTEEEQ+R AQR+ L+Q LP+ VYDPGRD SE+++ ECVIC+++FV GDPIR LPC H
Sbjct: 61 QLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHI 120
Query: 110 FHLDCIDTWLLRSFTCPYCRGPVDAALSTS 139
+HLDCID WL+RSFTCP C PVDAAL +S
Sbjct: 121 YHLDCIDDWLMRSFTCPSCMEPVDAALLSS 150
>gi|5174653 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 62.0 bits (149), Expect = 3e-10
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 88 CVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTCPYCRGPV 132
C +C+ ++V G+ +R LPC H FH+ CID WL + TCP CR PV
Sbjct: 632 CSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQPV 676
>gi|150378447 zinc and ring finger 3 [Homo sapiens]
Length = 836
Score = 62.0 bits (149), Expect = 3e-10
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 81 SEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTCPYCR 129
S +C ICL +++ G+ +R +PC H FH C+D WLL+ TCP+CR
Sbjct: 186 SSSSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCR 234
>gi|34305295 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 62.0 bits (149), Expect = 3e-10
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 88 CVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTCPYCRGPV 132
C +C+ ++V G+ +R LPC H FH+ CID WL + TCP CR PV
Sbjct: 632 CSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQPV 676
>gi|34305293 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 62.0 bits (149), Expect = 3e-10
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 88 CVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTCPYCRGPV 132
C +C+ ++V G+ +R LPC H FH+ CID WL + TCP CR PV
Sbjct: 632 CSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQPV 676
>gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 61.2 bits (147), Expect = 5e-10
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 66 LQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTC 125
++ LP ++P +SE+ + CV+C+ +F +R LPC H FH C+D WL + TC
Sbjct: 360 IEQLPSYRFNPNNHQSEQTL--CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTC 417
Query: 126 PYCR 129
P CR
Sbjct: 418 PICR 421
>gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 61.2 bits (147), Expect = 5e-10
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 66 LQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTC 125
++ LP ++P +SE+ + CV+C+ +F +R LPC H FH C+D WL + TC
Sbjct: 360 IEQLPSYRFNPNNHQSEQTL--CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTC 417
Query: 126 PYCR 129
P CR
Sbjct: 418 PICR 421
>gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens]
Length = 465
Score = 61.2 bits (147), Expect = 5e-10
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 66 LQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTC 125
++ LP ++P +SE+ + CV+C+ +F +R LPC H FH C+D WL + TC
Sbjct: 393 IEQLPSYRFNPNNHQSEQTL--CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTC 450
Query: 126 PYCR 129
P CR
Sbjct: 451 PICR 454
>gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 61.2 bits (147), Expect = 5e-10
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 66 LQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTC 125
++ LP ++P +SE+ + CV+C+ +F +R LPC H FH C+D WL + TC
Sbjct: 360 IEQLPSYRFNPNNHQSEQTL--CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTC 417
Query: 126 PYCR 129
P CR
Sbjct: 418 PICR 421
>gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens]
Length = 515
Score = 61.2 bits (147), Expect = 5e-10
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 66 LQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTC 125
++ LP ++P +SE+ + CV+C+ +F +R LPC H FH C+D WL + TC
Sbjct: 443 IEQLPSYRFNPNNHQSEQTL--CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTC 500
Query: 126 PYCR 129
P CR
Sbjct: 501 PICR 504
>gi|7662486 ring finger protein 44 [Homo sapiens]
Length = 432
Score = 59.7 bits (143), Expect = 1e-09
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 66 LQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTC 125
++ LP ++P +SE+ + CV+C +F +R LPC H FH C+D WL + TC
Sbjct: 360 IEQLPSYRFNPDSHQSEQTL--CVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTC 417
Query: 126 PYCR 129
P CR
Sbjct: 418 PICR 421
>gi|58331204 ring finger protein 150 [Homo sapiens]
Length = 438
Score = 59.3 bits (142), Expect = 2e-09
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 77 GRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTCPYCRGPVDAAL 136
G ++E + C +C+ + D +R LPC+H FH C+D WLL TCP C+ + AL
Sbjct: 267 GDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNILKAL 326
>gi|29789407 ring finger protein 149 [Homo sapiens]
Length = 400
Score = 58.5 bits (140), Expect = 3e-09
Identities = 27/60 (45%), Positives = 32/60 (53%)
Query: 77 GRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTCPYCRGPVDAAL 136
G + + C +C+ F D IR LPCKH FH CID WLL TCP C+ V AL
Sbjct: 258 GEKGIDVDAENCAVCIENFKVKDIIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKAL 317
>gi|37595553 ring finger protein 111 [Homo sapiens]
Length = 986
Score = 58.5 bits (140), Expect = 3e-09
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 77 GRDKSEEEMPE-CVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTCPYCRGPVDAA 135
G + +EE+ E C ICL G+ +R LPC H FH C+D WL+ + CP CR ++A
Sbjct: 922 GEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 981
Query: 136 L 136
L
Sbjct: 982 L 982
>gi|29788758 ring finger protein 130 [Homo sapiens]
Length = 419
Score = 57.8 bits (138), Expect = 5e-09
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 77 GRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTCPYCR 129
G +++ + C +C+ + D +R LPCKH FH C+D WL TCP C+
Sbjct: 253 GDKETDPDFDHCAVCIESYKQNDVVRILPCKHVFHKSCVDPWLSEHCTCPMCK 305
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 57.4 bits (137), Expect = 7e-09
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 83 EEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTCPYCRGPVDAA 135
+ + C +C+ E+ G+ +R LPC H +H+ CID WL + TCP CR V A+
Sbjct: 565 DALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLAS 617
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 57.4 bits (137), Expect = 7e-09
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 83 EEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTCPYCRGPVDAA 135
+ + C +C+ E+ G+ +R LPC H +H+ CID WL + TCP CR V A+
Sbjct: 565 DALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLAS 617
>gi|21040269 ring finger protein 133 [Homo sapiens]
Length = 376
Score = 57.0 bits (136), Expect = 9e-09
Identities = 24/57 (42%), Positives = 31/57 (54%)
Query: 73 VYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTCPYCR 129
V G ++ CVIC + D +R L CKHFFH +CID W+L TCP C+
Sbjct: 241 VVKEGDEEINPNGDSCVICFERYKPNDIVRILTCKHFFHKNCIDPWILPHGTCPICK 297
>gi|37675277 ring finger protein 148 [Homo sapiens]
Length = 305
Score = 57.0 bits (136), Expect = 9e-09
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 56 QVRTAQRLSLLQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCI 115
Q++T + ++ Q L V G ++ + CV+C + D +R L CKHFFH CI
Sbjct: 227 QIKTDVKKAIDQ-LQLRVLKEGDEELDLNEDNCVVCFDTYKPQDVVRILTCKHFFHKACI 285
Query: 116 DTWLLRSFTCPYCR 129
D WLL TCP C+
Sbjct: 286 DPWLLAHRTCPMCK 299
>gi|14149702 ring finger protein 167 [Homo sapiens]
Length = 350
Score = 56.6 bits (135), Expect = 1e-08
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 66 LQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRS-FT 124
L+ +P Y G ++ C ICL E+ GD +R LPC H +H C+D WL ++ T
Sbjct: 213 LKQIPTHDYQKG-----DQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKT 267
Query: 125 CPYCRGPV 132
CP C+ PV
Sbjct: 268 CPICKQPV 275
>gi|34577087 ring finger protein 13 [Homo sapiens]
Length = 381
Score = 56.2 bits (134), Expect = 2e-08
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 80 KSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRS-FTCPYCRGPV 132
K +E C ICL E+ GD +R LPC H +H C+D WL ++ TCP C+ V
Sbjct: 232 KKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>gi|6005864 ring finger protein 13 [Homo sapiens]
Length = 381
Score = 56.2 bits (134), Expect = 2e-08
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 80 KSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRS-FTCPYCRGPV 132
K +E C ICL E+ GD +R LPC H +H C+D WL ++ TCP C+ V
Sbjct: 232 KKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>gi|57165361 ring finger protein 165 [Homo sapiens]
Length = 346
Score = 56.2 bits (134), Expect = 2e-08
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 75 DPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTCPYCRGPVDA 134
D G + +E +C ICL G+ +R LPC H FH C+D WL S CP CR ++
Sbjct: 283 DEGEESDTDE--KCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIET 340
Query: 135 AL 136
L
Sbjct: 341 QL 342
>gi|21539663 praja 1 isoform c [Homo sapiens]
Length = 455
Score = 55.1 bits (131), Expect = 3e-08
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 66 LQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTC 125
+ LPE + +EM C IC E+V G+ LPC H+FH C+ WL +S TC
Sbjct: 386 IDALPEILVTEDHGAVGQEMC-CPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTC 444
Query: 126 PYCR 129
P CR
Sbjct: 445 PVCR 448
>gi|74048537 praja 1 isoform b [Homo sapiens]
Length = 588
Score = 55.1 bits (131), Expect = 3e-08
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 66 LQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTC 125
+ LPE + +EM C IC E+V G+ LPC H+FH C+ WL +S TC
Sbjct: 519 IDALPEILVTEDHGAVGQEMC-CPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTC 577
Query: 126 PYCR 129
P CR
Sbjct: 578 PVCR 581
>gi|41281725 praja 1 isoform a [Homo sapiens]
Length = 643
Score = 55.1 bits (131), Expect = 3e-08
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 66 LQCLPEEVYDPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTC 125
+ LPE + +EM C IC E+V G+ LPC H+FH C+ WL +S TC
Sbjct: 574 IDALPEILVTEDHGAVGQEMC-CPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTC 632
Query: 126 PYCR 129
P CR
Sbjct: 633 PVCR 636
>gi|63025220 ring finger protein 215 [Homo sapiens]
Length = 377
Score = 54.7 bits (130), Expect = 4e-08
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 75 DPGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTCPYCR 129
DPG + C +CL F +R LPCKH FH DC+D WL+ TCP C+
Sbjct: 319 DPGAET-------CAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLMLQQTCPLCK 366
>gi|56711322 ring finger protein 43 [Homo sapiens]
Length = 783
Score = 53.9 bits (128), Expect = 7e-08
Identities = 23/53 (43%), Positives = 28/53 (52%)
Query: 76 PGRDKSEEEMPECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTCPYC 128
P S P C ICL EF G +R + C H FH +C+D WL + TCP C
Sbjct: 260 PDSGSSCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLC 312
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.139 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,964,135
Number of Sequences: 37866
Number of extensions: 465339
Number of successful extensions: 1565
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 1442
Number of HSP's gapped (non-prelim): 203
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.