Guide to the Human Genome
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Search of human proteins with 239743359

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743359 PREDICTED: hypothetical protein XP_002342827 [Homo
sapiens]
         (194 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754714 PREDICTED: hypothetical protein [Homo sapiens]           395   e-110
gi|239743359 PREDICTED: hypothetical protein XP_002342827 [Homo ...   395   e-110
gi|239749263 PREDICTED: hypothetical protein [Homo sapiens]           392   e-109
gi|239509052 PREDICTED: hypothetical protein [Homo sapiens]           392   e-109
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]     41   7e-04
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]     41   7e-04
gi|122692281 hypothetical protein LOC645369 [Homo sapiens]             39   0.002
gi|34486092 adenylate cyclase 5 [Homo sapiens]                         38   0.006
gi|112734870 hypothetical protein LOC57648 [Homo sapiens]              36   0.023
gi|156938257 leucine rich repeat containing 16B [Homo sapiens]         36   0.023
gi|239749631 PREDICTED: hypothetical protein [Homo sapiens]            35   0.031
gi|239748448 PREDICTED: hypothetical protein [Homo sapiens]            35   0.031
gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo ...    35   0.031
gi|239742390 PREDICTED: hypothetical protein [Homo sapiens]            35   0.031
gi|116292168 KRAB A domain containing 1 [Homo sapiens]                 35   0.031
gi|186928829 dermokine isoform 4 precursor [Homo sapiens]              35   0.040
gi|186928827 dermokine isoform 5 precursor [Homo sapiens]              35   0.040
gi|186928825 dermokine isoform 3 precursor [Homo sapiens]              35   0.040
gi|33504489 dermokine isoform 2 precursor [Homo sapiens]               35   0.040
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             35   0.040
gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo sa...    35   0.040
gi|38683860 insulin receptor substrate 2 [Homo sapiens]                35   0.052
gi|28559039 mediator complex subunit 1 [Homo sapiens]                  35   0.052
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]             35   0.052
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]              35   0.052
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        35   0.052
gi|153792074 proline rich 12 [Homo sapiens]                            35   0.052
gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo sap...    34   0.068
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    34   0.089
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    34   0.089

>gi|239754714 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 194

 Score =  395 bits (1014), Expect = e-110
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60
           MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL
Sbjct: 1   MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60

Query: 61  QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE 120
           QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE
Sbjct: 61  QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE 120

Query: 121 KAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSL 180
           KAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSL
Sbjct: 121 KAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSL 180

Query: 181 TKAGPGDGGSGQTP 194
           TKAGPGDGGSGQTP
Sbjct: 181 TKAGPGDGGSGQTP 194


>gi|239743359 PREDICTED: hypothetical protein XP_002342827 [Homo
           sapiens]
          Length = 194

 Score =  395 bits (1014), Expect = e-110
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60
           MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL
Sbjct: 1   MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60

Query: 61  QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE 120
           QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE
Sbjct: 61  QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE 120

Query: 121 KAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSL 180
           KAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSL
Sbjct: 121 KAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSL 180

Query: 181 TKAGPGDGGSGQTP 194
           TKAGPGDGGSGQTP
Sbjct: 181 TKAGPGDGGSGQTP 194


>gi|239749263 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 194

 Score =  392 bits (1007), Expect = e-109
 Identities = 192/194 (98%), Positives = 193/194 (99%)

Query: 1   MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60
           MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL
Sbjct: 1   MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60

Query: 61  QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE 120
           QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE
Sbjct: 61  QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE 120

Query: 121 KAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSL 180
           KAGDSGTGT+RKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPG SPFRGSL
Sbjct: 121 KAGDSGTGTVRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGTSPFRGSL 180

Query: 181 TKAGPGDGGSGQTP 194
           TKAGPGDGGSGQTP
Sbjct: 181 TKAGPGDGGSGQTP 194


>gi|239509052 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 194

 Score =  392 bits (1007), Expect = e-109
 Identities = 192/194 (98%), Positives = 193/194 (99%)

Query: 1   MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60
           MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL
Sbjct: 1   MTTPETARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60

Query: 61  QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE 120
           QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE
Sbjct: 61  QRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWRE 120

Query: 121 KAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSL 180
           KAGDSGTGT+RKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPG SPFRGSL
Sbjct: 121 KAGDSGTGTVRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGTSPFRGSL 180

Query: 181 TKAGPGDGGSGQTP 194
           TKAGPGDGGSGQTP
Sbjct: 181 TKAGPGDGGSGQTP 194


>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
          Length = 2285

 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 20/125 (16%)

Query: 71  PALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTL 130
           P  P+  L+ P    P S  AAA+G +    PP   + S S  + S  +++ G  G G  
Sbjct: 224 PPAPAYALSSPRGGTPGSGAAAAAGSK----PPPSSSASASSSSSSFAQQRFGAMGGGG- 278

Query: 131 RKRVEGLGDGVLLPPAAPT-GFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGG 189
                  G G   P A PT     TS  S+ G Q    G   G           GP DGG
Sbjct: 279 ---PSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSG-----------GPQDGG 324

Query: 190 SGQTP 194
           +G+ P
Sbjct: 325 AGKGP 329



 Score = 31.2 bits (69), Expect = 0.58
 Identities = 40/167 (23%), Positives = 56/167 (33%), Gaps = 31/167 (18%)

Query: 28  SPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPL 87
           +P S  A  + S P  P   +++ASS SS  + QR      G P+    G  +P+A+  L
Sbjct: 238 TPGSGAAAAAGSKP--PPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTL 295

Query: 88  SVRAAASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAA 147
           +    +             AR      G  +     D G G      +G  D        
Sbjct: 296 NQLLTSP----------SSARGYQGYPGGDYSGGPQDGGAG------KGPAD-------- 331

Query: 148 PTGFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGGSGQTP 194
                  S C    A A  A +A G +  R       PG  G G  P
Sbjct: 332 -----MASQCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQP 373


>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
          Length = 2068

 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 20/125 (16%)

Query: 71  PALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTL 130
           P  P+  L+ P    P S  AAA+G +    PP   + S S  + S  +++ G  G G  
Sbjct: 224 PPAPAYALSSPRGGTPGSGAAAAAGSK----PPPSSSASASSSSSSFAQQRFGAMGGGG- 278

Query: 131 RKRVEGLGDGVLLPPAAPT-GFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGG 189
                  G G   P A PT     TS  S+ G Q    G   G           GP DGG
Sbjct: 279 ---PSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSG-----------GPQDGG 324

Query: 190 SGQTP 194
           +G+ P
Sbjct: 325 AGKGP 329



 Score = 31.2 bits (69), Expect = 0.58
 Identities = 40/167 (23%), Positives = 56/167 (33%), Gaps = 31/167 (18%)

Query: 28  SPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPL 87
           +P S  A  + S P  P   +++ASS SS  + QR      G P+    G  +P+A+  L
Sbjct: 238 TPGSGAAAAAGSKP--PPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTL 295

Query: 88  SVRAAASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAA 147
           +    +             AR      G  +     D G G      +G  D        
Sbjct: 296 NQLLTSP----------SSARGYQGYPGGDYSGGPQDGGAG------KGPAD-------- 331

Query: 148 PTGFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGGSGQTP 194
                  S C    A A  A +A G +  R       PG  G G  P
Sbjct: 332 -----MASQCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQP 373


>gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
          Length = 621

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 68  PGEPALPSAGLARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGT 127
           P  PA PS G  R +AS P      AS  R P  PP     S +    S +RE++G +G+
Sbjct: 285 PPHPAAPSGGRPRGAASPP----DLASSPRCPREPP-----SLAEAVYSVYRERSGVAGS 335

Query: 128 GTLRKRVEGLGDGVLLPPA---APTGFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAG 184
                            PA    P  + R ST SS    +L   SA    P +G   + G
Sbjct: 336 RRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSL---SAFALLPLQGGRDRGG 392

Query: 185 PGDGGS 190
             +G S
Sbjct: 393 DAEGAS 398


>gi|34486092 adenylate cyclase 5 [Homo sapiens]
          Length = 1261

 Score = 37.7 bits (86), Expect = 0.006
 Identities = 44/168 (26%), Positives = 61/168 (36%), Gaps = 21/168 (12%)

Query: 44  PARGNSAASSFSSPSSLQRQHVGEPGEPALPSA----GLARPSASQPLSVRAAASGERRP 99
           P  G    S++    S    +   PG  A  S     G   P   Q L+ R  +  +  P
Sbjct: 22  PRGGPEHRSAWGEADSRANGYPHAPGGSARGSTKKPGGAVTPQQQQRLASRWRSDDDDDP 81

Query: 100 HVP---PWDGARSRSWCAGSAWREKAGDS-GTGTLR-KRVEGLGDGVLLPPAAPTGFTRT 154
            +    P  G    S+ + SAW+E+ GD  G G+ R +R    G     PPA   G +  
Sbjct: 82  PLSGDDPLAGGFGFSFRSKSAWQERGGDDCGRGSRRQRRGAASGGSTRAPPAGGGGGSAA 141

Query: 155 STCSSMGAQALGAGSAPGASPFRGSLTKA------------GPGDGGS 190
           +  S+ G +        G    RG    A            G GDGGS
Sbjct: 142 AAASAGGTEVRPRSVEVGLEERRGKGRAADELEAGAVEGGEGSGDGGS 189


>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
          Length = 1094

 Score = 35.8 bits (81), Expect = 0.023
 Identities = 49/164 (29%), Positives = 62/164 (37%), Gaps = 23/164 (14%)

Query: 36  GSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSAS----QPLSVRA 91
           GS   P +P R  S +S +SS S          G P LP  GLA P AS    QP     
Sbjct: 566 GSRRPPRSPERTLSPSSGYSSQS----------GTPTLPPKGLAGPPASPGKAQPPKPER 615

Query: 92  AASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLP--PAAPT 149
             S  R P       +   S C+ S+    +  SG   L      LGD  ++P  P  P 
Sbjct: 616 VTS-LRSPGASV--SSSLTSLCSSSSDPAPSDRSGPQILTP----LGDRFVIPPHPKVPA 668

Query: 150 GFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGGSGQT 193
            F+   +       A  A +AP   P   S T A P    + QT
Sbjct: 669 PFSPPPSKPRSPNPAAPALAAPAVVPGPVSTTDASPQSPPTPQT 712



 Score = 27.7 bits (60), Expect = 6.4
 Identities = 40/127 (31%), Positives = 50/127 (39%), Gaps = 17/127 (13%)

Query: 28  SPVSVTARGSFSSPSNP-ARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQP 86
           SP SV + G FSS S+P  R    +SS  + S  Q           L S G    S  QP
Sbjct: 386 SPASVRSLGRFSSVSSPQPRSRHPSSSSDTWSHSQSSDTIVSDGSTLSSKG---GSEGQP 442

Query: 87  LSVRAAASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLL--- 143
            S  A+ S      VPP  G   R   +G +  E    S T ++R   +  G  V L   
Sbjct: 443 ESSTASNS-----VVPPPQGGSGRGSPSGGSTAEA---SDTLSIRSSGQLSGRSVSLRKL 494

Query: 144 --PPAAP 148
             PP  P
Sbjct: 495 KRPPPPP 501


>gi|156938257 leucine rich repeat containing 16B [Homo sapiens]
          Length = 1372

 Score = 35.8 bits (81), Expect = 0.023
 Identities = 49/191 (25%), Positives = 65/191 (34%), Gaps = 34/191 (17%)

Query: 21   FTYMGEHSPVSVTARGSFSSPSN-PARGNSAASSFSSPSSLQRQHVGEPGEPALPSAG-- 77
            F+ +G   P   TA GS+   S  P  G              R     PG P++P+ G  
Sbjct: 944  FSGLGGSQP---TASGSWEGLSELPTHGYKLRHQTQGRPRPPRTTPPGPGRPSMPAPGTR 1000

Query: 78   --------------------LARPSASQPLSVRAAASGERRPHVPPWDGARSRSWCAGSA 117
                                +   S+S P ++R    G     +PP    R R       
Sbjct: 1001 QENGMATRLDEGLEDFFSRRVLEESSSYPRTLRTVRPGLSEAPLPPLQKKRRRGLFHFRR 1060

Query: 118  WREKAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPGASPFR 177
             R   GD G G+          G+LLPP  P   T+ S   S    +LG  S+P  SP  
Sbjct: 1061 PRSFKGDRGPGSPT-------TGLLLPPPPPPPPTQESP-PSPDPPSLGNNSSPCWSPEE 1112

Query: 178  GSLTKAGPGDG 188
             S    G G G
Sbjct: 1113 ESSLLPGFGGG 1123


>gi|239749631 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 217

 Score = 35.4 bits (80), Expect = 0.031
 Identities = 34/101 (33%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 33  TARGSFSSPSNPARGNSAASSFSSPSSLQRQHVG--EPGEPALPSAG-------LARPSA 83
           T RGS S+P  PAR  SA           R   G  E GE   P+ G       +AR +A
Sbjct: 99  TRRGSCSAPLGPARRCSARRPRLHQGGAGRLAAGGAEAGERRSPNRGATSSLSPIARGAA 158

Query: 84  S-QPLS-----VRAAASGERRPHVPPWDGARSRSWCAGSAW 118
             +P S      R  A    R  +PP    R+RSW  G  W
Sbjct: 159 DVRPFSWVGGLPRPPAPAALRLLLPPAPRRRARSWACGPGW 199


>gi|239748448 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 285

 Score = 35.4 bits (80), Expect = 0.031
 Identities = 46/179 (25%), Positives = 63/179 (35%), Gaps = 34/179 (18%)

Query: 28  SPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPL 87
           +P +    G + +P  P RG   +  F+SP        G P  P LP A  AR  A+   
Sbjct: 61  APETGCVLGQWKTPEKPRRGRPGSLDFASPGG-----AGGPQSPHLPRAPTARRGAA--- 112

Query: 88  SVRAAASGERRPHVPPWD-----------GAR----SRSWCAGSAWREKAGDSGTGTLRK 132
                A     P V  W            GAR    SR W  G               R 
Sbjct: 113 VADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSAPVASLQWACFRW 172

Query: 133 RVEGLGDGVLLPPAAPTGFTRTS-TCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGGS 190
                 +   LPPAA   +T+ S +C +   +A G G+ P + P          G+GG+
Sbjct: 173 AGPASPN---LPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCP-------GNVGEGGA 221


>gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo
           sapiens]
          Length = 217

 Score = 35.4 bits (80), Expect = 0.031
 Identities = 34/101 (33%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 33  TARGSFSSPSNPARGNSAASSFSSPSSLQRQHVG--EPGEPALPSAG-------LARPSA 83
           T RGS S+P  PAR  SA           R   G  E GE   P+ G       +AR +A
Sbjct: 99  TRRGSCSAPLGPARRCSARRPRLHQGGAGRLAAGGAEAGERRSPNRGATSSLSPIARGAA 158

Query: 84  S-QPLS-----VRAAASGERRPHVPPWDGARSRSWCAGSAW 118
             +P S      R  A    R  +PP    R+RSW  G  W
Sbjct: 159 DVRPFSWVGGLPRPPAPAALRLLLPPAPRRRARSWACGPGW 199


>gi|239742390 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 285

 Score = 35.4 bits (80), Expect = 0.031
 Identities = 46/179 (25%), Positives = 63/179 (35%), Gaps = 34/179 (18%)

Query: 28  SPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPL 87
           +P +    G + +P  P RG   +  F+SP        G P  P LP A  AR  A+   
Sbjct: 61  APETGCVLGQWKTPEKPRRGRPGSLDFASPGG-----AGGPQSPHLPRAPTARRGAA--- 112

Query: 88  SVRAAASGERRPHVPPWD-----------GAR----SRSWCAGSAWREKAGDSGTGTLRK 132
                A     P V  W            GAR    SR W  G               R 
Sbjct: 113 VADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSAPVASLQWACFRW 172

Query: 133 RVEGLGDGVLLPPAAPTGFTRTS-TCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGGS 190
                 +   LPPAA   +T+ S +C +   +A G G+ P + P          G+GG+
Sbjct: 173 AGPASPN---LPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCP-------GNVGEGGA 221


>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
          Length = 1030

 Score = 35.4 bits (80), Expect = 0.031
 Identities = 44/159 (27%), Positives = 64/159 (40%), Gaps = 18/159 (11%)

Query: 29  PVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPLS 88
           P+S +A G       P+ G  A ++ +S S L+       G P   S+    P  S   +
Sbjct: 353 PLSPSATGDTRGVPQPSWGPEAQAASASSSPLEALEACLKGIPPNGSSPSQLPPTSCSQN 412

Query: 89  VRAAASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAAP 148
            +   S  ++P + P    RS S     A RE     G   L+  V       L P   P
Sbjct: 413 PQPGDSRSQKPELQPH---RSHS---EEATREPVLPLG---LQSCVRDGPSRPLAPRGTP 463

Query: 149 TGFTRTSTC-------SSMGAQAL--GAGSAPGASPFRG 178
           T F+ +S+        S +G Q    G GS PG+SP +G
Sbjct: 464 TSFSSSSSTDWDLDFGSPVGNQGQHPGKGSPPGSSPLQG 502


>gi|186928829 dermokine isoform 4 precursor [Homo sapiens]
          Length = 386

 Score = 35.0 bits (79), Expect = 0.040
 Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 7/148 (4%)

Query: 47  GNSAASSFSSPSSLQRQHVGEPGEPALPS---AGLARPSASQPLSVRAAASGERRPHVPP 103
           GNSA S   +P        G  G P   +     +A+P      SVRA+   E   + PP
Sbjct: 178 GNSAGSFGMNPQGAPWGQGGNGGPPNFGTNTQGAVAQPGYG---SVRASNQNEGCTNPPP 234

Query: 104 WDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQ 163
             G+   S  +G     ++G SG+G+      G   G     ++  G +  S+  S G  
Sbjct: 235 -SGSGGGSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGGSSGNS 293

Query: 164 ALGAGSAPGASPFRGSLTKAGPGDGGSG 191
               G +   S +  S   +    GGSG
Sbjct: 294 GGSRGDSGSESSWGSSTGSSSGNHGGSG 321


>gi|186928827 dermokine isoform 5 precursor [Homo sapiens]
          Length = 398

 Score = 35.0 bits (79), Expect = 0.040
 Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 7/148 (4%)

Query: 47  GNSAASSFSSPSSLQRQHVGEPGEPALPS---AGLARPSASQPLSVRAAASGERRPHVPP 103
           GNSA S   +P        G  G P   +     +A+P      SVRA+   E   + PP
Sbjct: 178 GNSAGSFGMNPQGAPWGQGGNGGPPNFGTNTQGAVAQPGYG---SVRASNQNEGCTNPPP 234

Query: 104 WDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQ 163
             G+   S  +G     ++G SG+G+      G   G     ++  G +  S+  S G  
Sbjct: 235 -SGSGGGSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGGSSGNS 293

Query: 164 ALGAGSAPGASPFRGSLTKAGPGDGGSG 191
               G +   S +  S   +    GGSG
Sbjct: 294 GGSRGDSGSESSWGSSTGSSSGNHGGSG 321


>gi|186928825 dermokine isoform 3 precursor [Homo sapiens]
          Length = 416

 Score = 35.0 bits (79), Expect = 0.040
 Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 7/148 (4%)

Query: 47  GNSAASSFSSPSSLQRQHVGEPGEPALPS---AGLARPSASQPLSVRAAASGERRPHVPP 103
           GNSA S   +P        G  G P   +     +A+P      SVRA+   E   + PP
Sbjct: 178 GNSAGSFGMNPQGAPWGQGGNGGPPNFGTNTQGAVAQPGYG---SVRASNQNEGCTNPPP 234

Query: 104 WDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQ 163
             G+   S  +G     ++G SG+G+      G   G     ++  G +  S+  S G  
Sbjct: 235 -SGSGGGSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGGSSGNS 293

Query: 164 ALGAGSAPGASPFRGSLTKAGPGDGGSG 191
               G +   S +  S   +    GGSG
Sbjct: 294 GGSRGDSGSESSWGSSTGSSSGNHGGSG 321


>gi|33504489 dermokine isoform 2 precursor [Homo sapiens]
          Length = 476

 Score = 35.0 bits (79), Expect = 0.040
 Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 7/148 (4%)

Query: 47  GNSAASSFSSPSSLQRQHVGEPGEPALPS---AGLARPSASQPLSVRAAASGERRPHVPP 103
           GNSA S   +P        G  G P   +     +A+P      SVRA+   E   + PP
Sbjct: 178 GNSAGSFGMNPQGAPWGQGGNGGPPNFGTNTQGAVAQPGYG---SVRASNQNEGCTNPPP 234

Query: 104 WDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQ 163
             G+   S  +G     ++G SG+G+      G   G     ++  G +  S+  S G  
Sbjct: 235 -SGSGGGSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGGSSGNS 293

Query: 164 ALGAGSAPGASPFRGSLTKAGPGDGGSG 191
               G +   S +  S   +    GGSG
Sbjct: 294 GGSRGDSGSESSWGSSTGSSSGNHGGSG 321


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 35.0 bits (79), Expect = 0.040
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 18/103 (17%)

Query: 32  VTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPLSVRA 91
           V  + + ++P+ PARG  + S  S+PSS  R      G  A   AG  R    +    R+
Sbjct: 345 VRDKAAAAAPTPPARGKESPSPRSAPSSQGR------GGRAAGGAGRRRRRRRRRRRSRS 398

Query: 92  AAS-----GERRPH-VPPWDGARSRSWCAGSAWREKAGDSGTG 128
           +AS     G RRP   PP   +RS S    S+      DSG+G
Sbjct: 399 SASAPRRRGRRRPRPAPPRGSSRSLSRARSSS------DSGSG 435



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 45/175 (25%), Positives = 67/175 (38%), Gaps = 28/175 (16%)

Query: 35  RGSFSSPSNPARGNSAASSFSSPSSLQRQ--HVGEPGEPALPSAGLARPSASQP-LSVRA 91
           R S S   +P+ G+   S   +  S QR   H G PG    P     +PS+  P +  +A
Sbjct: 293 RSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPD---KPSSPSPRVRDKA 349

Query: 92  AASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGT-----LRKRVEGLGDGVLLP-- 144
           AA+       PP  G  S S  +  + + + G +  G       R+R          P  
Sbjct: 350 AAAAP----TPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRR 405

Query: 145 -------PAAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGGSGQ 192
                  PA P G +R+ + +   + +     APG  P  GS      G GG G+
Sbjct: 406 RGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGS----ERGHGGHGK 456


>gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo
           sapiens]
          Length = 685

 Score = 35.0 bits (79), Expect = 0.040
 Identities = 45/169 (26%), Positives = 57/169 (33%), Gaps = 37/169 (21%)

Query: 29  PVSVTARGSFSS-PSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPL 87
           PV     GS SS P     G+   ++ S+PS         PG+PA  S G  RP +    
Sbjct: 395 PVPRRQNGSSSSGPERSISGSKKPTNDSNPSRRTVSGTCGPGQPASSSGGPGRPISGSVS 454

Query: 88  SVRAAAS--GERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPP 145
           S R   S  G  RP   P +                        LR+ V GLG     PP
Sbjct: 455 SARPLGSSRGPGRPVSSPHE------------------------LRRPVSGLG-----PP 485

Query: 146 AAPTGFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGGSGQTP 194
                    S   S+ A    + S PG       ++  GPG   S   P
Sbjct: 486 GRSVSGPGRSISGSIPAGRTVSNSVPGR-----PVSSLGPGQTVSSSGP 529



 Score = 33.9 bits (76), Expect = 0.089
 Identities = 40/153 (26%), Positives = 56/153 (36%), Gaps = 16/153 (10%)

Query: 37  SFSSPSNP----ARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPLSVRAA 92
           S SSPS P    +R   +A    +  SL       PG    P      P   QP S  ++
Sbjct: 318 STSSPSVPKTSASRTQKSAVEHKAKKSLSHPSHSRPGPMVTPHNKAKSPGVRQPGSSSSS 377

Query: 93  ASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFT 152
           A G+      P  G    +  +G   R + G S +G  R      G       + P+  T
Sbjct: 378 APGQ------PSTGVARPTVSSGPVPRRQNGSSSSGPERSI---SGSKKPTNDSNPSRRT 428

Query: 153 RTSTCSSMGAQALGAGSAPGASPFRGSLTKAGP 185
            + TC     Q   +   PG  P  GS++ A P
Sbjct: 429 VSGTCGP--GQPASSSGGPG-RPISGSVSSARP 458


>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
          Length = 1338

 Score = 34.7 bits (78), Expect = 0.052
 Identities = 48/181 (26%), Positives = 62/181 (34%), Gaps = 34/181 (18%)

Query: 8   RSTAMNARAQYRDFTYMGEHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGE 67
           RS++ N  A   D  YM      ++   GS S  S+     S AS  S+P  + +     
Sbjct: 641 RSSSSNLGA---DDGYMPMTPGAALAGSGSGSCRSDDYMPMSPAS-VSAPKQILQPRAAA 696

Query: 68  PGEPALPSAGLARPSASQPLSVRAAASG-----ERRPHVPPWDGARSRSWCAGSAWREKA 122
               A+PSAG A P+ +        ASG            P D    R WC      E A
Sbjct: 697 AAAAAVPSAGPAGPAPTSAAGRTFPASGGGYKASSPAESSPEDSGYMRMWCGSKLSMEHA 756

Query: 123 GDSGTGTLRKRVEGLGDGVLLP-----PAAPTGFTRTSTCSSMGAQALGAGSAPGASPFR 177
                           DG LLP       +P+    T T     + AL     PG  P R
Sbjct: 757 ----------------DGKLLPNGDYLNVSPSDAVTTGTPPDFFSAAL----HPGGEPLR 796

Query: 178 G 178
           G
Sbjct: 797 G 797



 Score = 32.0 bits (71), Expect = 0.34
 Identities = 48/177 (27%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 26   EHSPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQ 85
            + SP+S      FSSP +P  G  +     S   L       P  P LP    A PS+S 
Sbjct: 971  QRSPLSDYMNLDFSSPKSPKPGAPSGHPVGSLDGLLSPEASSP-YPPLPPRPSASPSSSL 1029

Query: 86   PLSVRAAASGERRPHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPP 145
                   A GE     P    A ++   A S+     GD+G  T  +   G+      P 
Sbjct: 1030 QPPPPPPAPGELYRLPPASAVATAQGPGAASSLSSDTGDNGDYT--EMAFGVAATPPQPI 1087

Query: 146  AAP------------TGFTRTSTCSSM-GAQALGAGSAPGASPFRGS-LTKAGPGDG 188
            AAP            +G  R S    + G +A    S P   P RG+ + +A P  G
Sbjct: 1088 AAPPKPEAARVASPTSGVKRLSLMEQVSGVEAFLQASQP-PDPHRGAKVIRADPQGG 1143


>gi|28559039 mediator complex subunit 1 [Homo sapiens]
          Length = 1581

 Score = 34.7 bits (78), Expect = 0.052
 Identities = 49/184 (26%), Positives = 73/184 (39%), Gaps = 39/184 (21%)

Query: 31   SVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLA----------- 79
            S  + GS SS  + +  +S  SS SS S    Q  G+PG   +   GL+           
Sbjct: 1116 SSKSEGSSSSKLSSSMYSSQGSSGSSQSKNSSQSGGKPGSSPITKHGLSSGSSSTKMKPQ 1175

Query: 80   -------RPSASQPL-----------SVRAAASGERRPHVPPWDGARSRSWCAGSAWREK 121
                    PS S+P            S + A+  +  P  PP   A+S    +GS     
Sbjct: 1176 GKPSSLMNPSLSKPNISPSHSRPPGGSDKLASPMKPVPGTPPSSKAKS-PISSGSGGSHM 1234

Query: 122  AGDSGTGTLRKRVEGLGDGVLL----PPAAPTGFTRTSTCSSMGAQALGA----GSAPGA 173
            +G S +  + K   GLG    L    PP++ +    +S+ SS G+    +    GS+ G 
Sbjct: 1235 SGTSSSSGM-KSSSGLGSSGSLSQKTPPSSNSCTASSSSFSSSGSSMSSSQNQHGSSKGK 1293

Query: 174  SPFR 177
            SP R
Sbjct: 1294 SPSR 1297


>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
          Length = 694

 Score = 34.7 bits (78), Expect = 0.052
 Identities = 52/182 (28%), Positives = 69/182 (37%), Gaps = 15/182 (8%)

Query: 4   PETARSTAMNARAQYRDFTYMGEHS---PVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60
           PE        AR    D    G+ +   P S   RG++  P    R + A  S SS  S 
Sbjct: 192 PEPKHPARAPARGDSEDRRGPGQKTGPDPASAPGRGNYGPPVR--RASEARMSSSSRDSE 249

Query: 61  QRQHVGEPGEPALPSAGLARPSASQ-----PLSVRAAASGE-RRPHVPPWDGARSRSWCA 114
              H G  G+ +   AGL R ++ Q     P SV++ A  +  +P  P   G+R     A
Sbjct: 250 SWDHSGGAGDSSRSPAGLRRANSVQASRPAPGSVQSPAPPQPGQPGTP--GGSRPGPGPA 307

Query: 115 GSAWREK--AGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPG 172
           G    +K     S  GT     E    GV   PA      R S  S   +QA  A   P 
Sbjct: 308 GRFPDQKPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQPA 367

Query: 173 AS 174
           A+
Sbjct: 368 AA 369


>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
          Length = 690

 Score = 34.7 bits (78), Expect = 0.052
 Identities = 52/182 (28%), Positives = 69/182 (37%), Gaps = 15/182 (8%)

Query: 4   PETARSTAMNARAQYRDFTYMGEHS---PVSVTARGSFSSPSNPARGNSAASSFSSPSSL 60
           PE        AR    D    G+ +   P S   RG++  P    R + A  S SS  S 
Sbjct: 188 PEPKHPARAPARGDSEDRRGPGQKTGPDPASAPGRGNYGPPVR--RASEARMSSSSRDSE 245

Query: 61  QRQHVGEPGEPALPSAGLARPSASQ-----PLSVRAAASGE-RRPHVPPWDGARSRSWCA 114
              H G  G+ +   AGL R ++ Q     P SV++ A  +  +P  P   G+R     A
Sbjct: 246 SWDHSGGAGDSSRSPAGLRRANSVQASRPAPGSVQSPAPPQPGQPGTP--GGSRPGPGPA 303

Query: 115 GSAWREK--AGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTSTCSSMGAQALGAGSAPG 172
           G    +K     S  GT     E    GV   PA      R S  S   +QA  A   P 
Sbjct: 304 GRFPDQKPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQPA 363

Query: 173 AS 174
           A+
Sbjct: 364 AA 365


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 34.7 bits (78), Expect = 0.052
 Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 28   SPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPL 87
            S  S ++  S SS S+ +  +S++SS SS SS       +PG  ALP          +P 
Sbjct: 2614 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALP----------KPA 2663

Query: 88   SVRAAASGERRPHVP--PWDGAR-SRS 111
            S +    GERR   P  P D  R SRS
Sbjct: 2664 SPKKPPPGERRSRSPRKPIDSLRDSRS 2690


>gi|153792074 proline rich 12 [Homo sapiens]
          Length = 2036

 Score = 34.7 bits (78), Expect = 0.052
 Identities = 35/118 (29%), Positives = 39/118 (33%), Gaps = 9/118 (7%)

Query: 74  PSAGLARPSASQPLSVRAAASGERR-PHVPPWDGARSRSWCAGSAWREKAGDSGTGTLRK 132
           PS G   PS + P    A ASG    P      GA       G  +R      G  T + 
Sbjct: 339 PSPGAGEPSKAGPSGATAGASGRATGPEAAGGGGAGG----GGGGYRPIIQSPGYKTGKG 394

Query: 133 RVEGLGDGVLLPPAAPTGFTRTSTCSSMG--AQALGAGSAPGASPFRGSLTKAGPGDG 188
                  G   PP  P   T T  C S+G  A A   G A GA    G     G   G
Sbjct: 395 GYGAAAGGATRPP--PPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQAYSPGQPQG 450



 Score = 32.3 bits (72), Expect = 0.26
 Identities = 49/158 (31%), Positives = 57/158 (36%), Gaps = 23/158 (14%)

Query: 41  PSNPARGNSAASSFSSPSSLQRQHVGEPGE----PALPSAGLARPSASQPLSVRAAASGE 96
           PS P     A     SP  LQ Q  G  GE    PA  S GL  P+AS  LS     S  
Sbjct: 483 PSGPPPPGLATCQSYSPDQLQGQLYGVQGEPYPGPAAHSQGL--PTASPSLSYSTGHSPA 540

Query: 97  RRPHVPPWDGARSRSWCAGS---AWREKAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTR 153
              H   W  +        S     R       TG    R  G+G      P AP  +  
Sbjct: 541 LSGHGGGWGPSSLGGGGEASPSHIIRPLQSPPATG----RPPGVGS-----PGAPGKYLS 591

Query: 154 TSTCSSMGAQALGAGS-APGASPFR----GSLTKAGPG 186
           +   S+      GAGS A GA  ++    GS   AGPG
Sbjct: 592 SVLASAPFLAPPGAGSYAAGAGGYKGKGDGSELLAGPG 629



 Score = 28.9 bits (63), Expect = 2.9
 Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 41   PSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPLSV---RAAASGER 97
            P  PA  +       +PSS     +  P  PA+PS     P A+ PL+      AA    
Sbjct: 1477 PPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPPPPPAAAPLAAPPEEPAAPSPE 1536

Query: 98   RPHVP---PWDGARSRSWCA--GSAWREKAGDSGTGTLRKRVE 135
             P +P   P   A+ +   A  G    E     G G  R+R E
Sbjct: 1537 DPELPDTRPLHLAKKQETAAVCGETDEEAGESGGEGIFRERDE 1579


>gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo
           sapiens]
          Length = 501

 Score = 34.3 bits (77), Expect = 0.068
 Identities = 40/138 (28%), Positives = 57/138 (41%), Gaps = 17/138 (12%)

Query: 38  FSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPLSVRAAASGER 97
           F S S   RG +   + ++  +    H  E  E  L   G    +A +  S R   +G +
Sbjct: 168 FGSGSAAGRGPTILDAPNTEGA----HGAEGAEWTLAGTGQEAQAAPKRGSTRPLCTGHQ 223

Query: 98  RPHVP-PWDGARSRSWCAGSAWREKAGDSGTGTLRKRVEGLGDGVLLPPAAPTGFTRTST 156
            P V  P +   ++    G+A      D GT   R R+ G+ +  L P AA    TRT+ 
Sbjct: 224 EPGVEEPGELEAAQERALGTA-----ADLGTLAPRGRLAGVTEEALKPTAA----TRTTL 274

Query: 157 CSSMGAQALGAGSAPGAS 174
                AQALG    PG S
Sbjct: 275 LGGKEAQALG---VPGGS 289


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 33.9 bits (76), Expect = 0.089
 Identities = 48/161 (29%), Positives = 58/161 (36%), Gaps = 27/161 (16%)

Query: 45  ARGNSAASSFSSPSSLQRQHVGEPGEPALPSA-GL-ARPSASQP---LSVRAAASGERRP 99
           A G    S  + P        G PGEP LP A GL  RP  + P   +    A   + RP
Sbjct: 529 APGERGPSGLAGPKGANGDP-GRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRP 587

Query: 100 HVPPWDGARSRSWCAG-------SAWREKAGDS---GTGTLRKRVEGLGDGVLLPPAAPT 149
             P   GAR +    G       +    KAG+    G   LR      G+     P  P 
Sbjct: 588 GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPA 647

Query: 150 GFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAG-PGDGG 189
           G           A   G   APG S F+G     G PG+GG
Sbjct: 648 G----------PAGERGEQGAPGPSGFQGLPGPPGPPGEGG 678


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 33.9 bits (76), Expect = 0.089
 Identities = 48/161 (29%), Positives = 58/161 (36%), Gaps = 27/161 (16%)

Query: 45  ARGNSAASSFSSPSSLQRQHVGEPGEPALPSA-GL-ARPSASQP---LSVRAAASGERRP 99
           A G    S  + P        G PGEP LP A GL  RP  + P   +    A   + RP
Sbjct: 460 APGERGPSGLAGPKGANGDP-GRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRP 518

Query: 100 HVPPWDGARSRSWCAG-------SAWREKAGDS---GTGTLRKRVEGLGDGVLLPPAAPT 149
             P   GAR +    G       +    KAG+    G   LR      G+     P  P 
Sbjct: 519 GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPA 578

Query: 150 GFTRTSTCSSMGAQALGAGSAPGASPFRGSLTKAG-PGDGG 189
           G           A   G   APG S F+G     G PG+GG
Sbjct: 579 G----------PAGERGEQGAPGPSGFQGLPGPPGPPGEGG 609


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.309    0.125    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,620,230
Number of Sequences: 37866
Number of extensions: 548256
Number of successful extensions: 3356
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 315
Number of HSP's that attempted gapping in prelim test: 2993
Number of HSP's gapped (non-prelim): 650
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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