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Search of human proteins with 239743356
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743356 PREDICTED: hypothetical protein XP_002342826 [Homo
sapiens]
(112 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754709 PREDICTED: hypothetical protein [Homo sapiens] 235 6e-63
gi|239749260 PREDICTED: hypothetical protein [Homo sapiens] 235 6e-63
gi|239743356 PREDICTED: hypothetical protein XP_002342826 [Homo ... 235 6e-63
gi|239509045 PREDICTED: hypothetical protein [Homo sapiens] 235 6e-63
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 44 4e-05
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 40 5e-04
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 40 5e-04
gi|239754911 PREDICTED: hypothetical protein [Homo sapiens] 39 9e-04
gi|239749451 PREDICTED: hypothetical protein [Homo sapiens] 39 9e-04
gi|239743581 PREDICTED: hypothetical protein [Homo sapiens] 39 9e-04
gi|40548415 dishevelled associated activator of morphogenesis 2 ... 39 9e-04
gi|54860079 nadrin isoform 1 [Homo sapiens] 38 0.002
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 36 0.006
gi|46909594 a disintegrin and metalloproteinase domain 15 isofor... 36 0.006
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 36 0.006
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 36 0.006
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 36 0.006
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 36 0.006
gi|239755710 PREDICTED: hypothetical protein [Homo sapiens] 36 0.008
gi|32483397 dopamine receptor D4 [Homo sapiens] 35 0.010
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 35 0.010
gi|33356170 myosin IXB isoform 1 [Homo sapiens] 35 0.010
gi|33186901 hypothetical protein LOC359845 [Homo sapiens] 35 0.010
gi|239753497 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|46409372 G protein-coupled receptor 153 [Homo sapiens] 35 0.013
gi|42544243 dynamin 3 isoform a [Homo sapiens] 35 0.017
gi|209915561 dynamin 3 isoform b [Homo sapiens] 35 0.017
gi|54860105 nadrin isoform 2 [Homo sapiens] 35 0.017
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 35 0.017
gi|142976757 immediate early response 5 [Homo sapiens] 34 0.022
>gi|239754709 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 235 bits (599), Expect = 6e-63
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MQLPLPSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGH 60
MQLPLPSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGH
Sbjct: 1 MQLPLPSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGH 60
Query: 61 SSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPSPPGRVHVQLGLSLGI 112
SSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPSPPGRVHVQLGLSLGI
Sbjct: 61 SSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPSPPGRVHVQLGLSLGI 112
>gi|239749260 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 235 bits (599), Expect = 6e-63
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MQLPLPSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGH 60
MQLPLPSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGH
Sbjct: 1 MQLPLPSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGH 60
Query: 61 SSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPSPPGRVHVQLGLSLGI 112
SSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPSPPGRVHVQLGLSLGI
Sbjct: 61 SSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPSPPGRVHVQLGLSLGI 112
>gi|239743356 PREDICTED: hypothetical protein XP_002342826 [Homo
sapiens]
Length = 112
Score = 235 bits (599), Expect = 6e-63
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MQLPLPSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGH 60
MQLPLPSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGH
Sbjct: 1 MQLPLPSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGH 60
Query: 61 SSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPSPPGRVHVQLGLSLGI 112
SSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPSPPGRVHVQLGLSLGI
Sbjct: 61 SSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPSPPGRVHVQLGLSLGI 112
>gi|239509045 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 235 bits (599), Expect = 6e-63
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MQLPLPSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGH 60
MQLPLPSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGH
Sbjct: 1 MQLPLPSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGH 60
Query: 61 SSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPSPPGRVHVQLGLSLGI 112
SSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPSPPGRVHVQLGLSLGI
Sbjct: 61 SSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPSPPGRVHVQLGLSLGI 112
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 43.5 bits (101), Expect = 4e-05
Identities = 33/91 (36%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 11 GLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGHSSSP--DALL 68
G+ P P++AH A ER A R + + PGP Q G G +SP AL
Sbjct: 47 GIRPAPAAAHPPAPRERPAAARLSALAAAQPRRRSPGP-----QGGGGGDIASPLPPALQ 101
Query: 69 PDARCPCPGVPSPGSQPVLLSLPLRRSPSPP 99
P P PSPG P S P PSPP
Sbjct: 102 PRGAPAVPAAPSPGPLPARPSSPPPSPPSPP 132
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 39.7 bits (91), Expect = 5e-04
Identities = 32/92 (34%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 11 GLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGHSSSP--DALL 68
G+ P P++AH A ER A R + + PGP Q G G +SP AL
Sbjct: 47 GIRPAPAAAHPPAPRERPAAARLSALAAAQPRRRSPGP-----QGGGGGDIASPLPPALQ 101
Query: 69 PDARCPCPGVPSPGSQPVLLSLPLRRSPSPPG 100
P P PSPG P S P R P G
Sbjct: 102 PRGAPAVPAAPSPGPLPARPSSPPPRPSLPSG 133
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 39.7 bits (91), Expect = 5e-04
Identities = 32/92 (34%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 11 GLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGHSSSP--DALL 68
G+ P P++AH A ER A R + + PGP Q G G +SP AL
Sbjct: 47 GIRPAPAAAHPPAPRERPAAARLSALAAAQPRRRSPGP-----QGGGGGDIASPLPPALQ 101
Query: 69 PDARCPCPGVPSPGSQPVLLSLPLRRSPSPPG 100
P P PSPG P S P R P G
Sbjct: 102 PRGAPAVPAAPSPGPLPARPSSPPPRPSLPSG 133
>gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 38.9 bits (89), Expect = 9e-04
Identities = 35/91 (38%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 6 PSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPG-RGHSSSP 64
P R +G P P+S HW R A RR G W GPG P+ + P HS SP
Sbjct: 144 PPRRRGPPPLPTSCHW---ARRSCALRR--GGAASWR-RGPGTPAAAPEAPSPPDHSPSP 197
Query: 65 DALLPDARC-PCPGVPS--PGSQPVLLSLPL 92
+RC PCP S P Q L LPL
Sbjct: 198 WT----SRCPPCPHASSFLPPGQSRCLRLPL 224
>gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 38.9 bits (89), Expect = 9e-04
Identities = 35/91 (38%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 6 PSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPG-RGHSSSP 64
P R +G P P+S HW R A RR G W GPG P+ + P HS SP
Sbjct: 144 PPRRRGPPPLPTSCHW---ARRSCALRR--GGAASWR-RGPGTPAAAPEAPSPPDHSPSP 197
Query: 65 DALLPDARC-PCPGVPS--PGSQPVLLSLPL 92
+RC PCP S P Q L LPL
Sbjct: 198 WT----SRCPPCPHASSFLPPGQSRCLRLPL 224
>gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 38.9 bits (89), Expect = 9e-04
Identities = 35/91 (38%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 6 PSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPG-RGHSSSP 64
P R +G P P+S HW R A RR G W GPG P+ + P HS SP
Sbjct: 144 PPRRRGPPPLPTSCHW---ARRSCALRR--GGAASWR-RGPGTPAAAPEAPSPPDHSPSP 197
Query: 65 DALLPDARC-PCPGVPS--PGSQPVLLSLPL 92
+RC PCP S P Q L LPL
Sbjct: 198 WT----SRCPPCPHASSFLPPGQSRCLRLPL 224
>gi|40548415 dishevelled associated activator of morphogenesis 2
[Homo sapiens]
Length = 1067
Score = 38.9 bits (89), Expect = 9e-04
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 22 RAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGHSSSPDALLPDARCPCPGVP-- 79
R V ++AQ +L +GP +P PG P P LP A CP P P
Sbjct: 501 RGQVAELVAQLSELSTGPVSSPPPPGGPLTLSSSMTTNDLPPPPPPLPFACCPPPPPPPL 560
Query: 80 -------SPGSQPVL-LSLPLRRSPSPPGRV 102
PG+ P L + LPL + P P V
Sbjct: 561 PPGGPPTPPGAPPCLGMGLPLPQDPYPSSDV 591
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 37.7 bits (86), Expect = 0.002
Identities = 32/111 (28%), Positives = 38/111 (34%), Gaps = 18/111 (16%)
Query: 6 PSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGHSSSPD 65
PS G P+P AAV Q+ SG A G L++ P SP
Sbjct: 569 PSPGDGSPPKPKDPV-SAAVPAPGRNNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPH 627
Query: 66 ALLPDARCPCPGVPSPGS-----------------QPVLLSLPLRRSPSPP 99
L + P P P PG+ P L P RSPSPP
Sbjct: 628 TLRRAVKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRSPSPP 678
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 38 GPRWAPAGPGPP---SLTVQDPGRGHSSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRR 94
G PAGP PP S G G S +L P G P PV ++P
Sbjct: 532 GSTVVPAGPEPPPQSSRAESSSGGGTVPSSAGILEQGPSPGDGSPPKPKDPVSAAVP--- 588
Query: 95 SPSPPGRVHVQL 106
PGR + Q+
Sbjct: 589 ---APGRNNSQI 597
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 36.2 bits (82), Expect = 0.006
Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 38 GPRWAPAGPGPPSL--TVQDPGRGHSSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRS 95
GPR P PGPP + +PGR +S D P PGVP P LP
Sbjct: 900 GPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGP---AGLPGVPGREGPPGFPGLP--GP 954
Query: 96 PSPPGR 101
P PPGR
Sbjct: 955 PGPPGR 960
Score = 32.3 bits (72), Expect = 0.083
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 9 AQGLLPEPSSAHWRAAVERVLAQRRQLG-SGPRWAPAGPGPPSLTVQDPGRGHSSSPDAL 67
AQ L S + W +V + ++ G G + P PGPP PG P L
Sbjct: 725 AQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPG-RAGPPGSPCLPGPPGL 783
Query: 68 LPDARCPCPGVPSPGSQPVLLSLP-LRRSPSPPGR 101
PCP P + P L ++P + P PPGR
Sbjct: 784 ------PCPVSPLGPAGPALQTVPGPQGPPGPPGR 812
>gi|46909594 a disintegrin and metalloproteinase domain 15 isoform 3
preproprotein [Homo sapiens]
Length = 839
Score = 36.2 bits (82), Expect = 0.006
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 22 RAAVERVLAQRRQLG-SGPRWAPAGPGPPSLTVQDPGRGHSSSPDALLP---DARCPCPG 77
RA + R Q L P P P P S +Q G P LP RCP
Sbjct: 751 RALLARGTKQASALSFPAPPSRPLPPDPVSKRLQSQGPAKPPPPRKPLPADPQGRCPSGD 810
Query: 78 VPSPGSQPVLLSLPLRRSPSPP 99
+P PG+ L +P R +P PP
Sbjct: 811 LPGPGAGIPPLVVPSRPAPPPP 832
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 59 GHSSSPDALLPDARCPCPGVPSPGSQPVL 87
GHS D LP CPCPG P+P ++
Sbjct: 351 GHSLGLDHDLPGNSCPCPG-PAPAKTCIM 378
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 36.2 bits (82), Expect = 0.006
Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 38 GPRWAPAGPGPPSL--TVQDPGRGHSSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRS 95
GPR P PGPP + +PGR +S D P PGVP P LP
Sbjct: 485 GPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGP---AGLPGVPGREGPPGFPGLP--GP 539
Query: 96 PSPPGR 101
P PPGR
Sbjct: 540 PGPPGR 545
Score = 32.3 bits (72), Expect = 0.083
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 9 AQGLLPEPSSAHWRAAVERVLAQRRQLG-SGPRWAPAGPGPPSLTVQDPGRGHSSSPDAL 67
AQ L S + W +V + ++ G G + P PGPP PG P L
Sbjct: 310 AQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPG-RAGPPGSPCLPGPPGL 368
Query: 68 LPDARCPCPGVPSPGSQPVLLSLP-LRRSPSPPGR 101
PCP P + P L ++P + P PPGR
Sbjct: 369 ------PCPVSPLGPAGPALQTVPGPQGPPGPPGR 397
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 36.2 bits (82), Expect = 0.006
Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 38 GPRWAPAGPGPPSL--TVQDPGRGHSSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRS 95
GPR P PGPP + +PGR +S D P PGVP P LP
Sbjct: 665 GPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGP---AGLPGVPGREGPPGFPGLP--GP 719
Query: 96 PSPPGR 101
P PPGR
Sbjct: 720 PGPPGR 725
Score = 32.3 bits (72), Expect = 0.083
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 9 AQGLLPEPSSAHWRAAVERVLAQRRQLG-SGPRWAPAGPGPPSLTVQDPGRGHSSSPDAL 67
AQ L S + W +V + ++ G G + P PGPP PG P L
Sbjct: 490 AQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPG-RAGPPGSPCLPGPPGL 548
Query: 68 LPDARCPCPGVPSPGSQPVLLSLP-LRRSPSPPGR 101
PCP P + P L ++P + P PPGR
Sbjct: 549 ------PCPVSPLGPAGPALQTVPGPQGPPGPPGR 577
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 36.2 bits (82), Expect = 0.006
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 38 GPRWAPAGPGPPSLT-VQDPG----RGHSSSPDALLPDARCPCPGVPSPGSQPVLLSLPL 92
GP+ P PGPP + PG G P AL P + PG+P P P P
Sbjct: 516 GPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQ---PGLPGPPGPPGPPGPPA 572
Query: 93 RRSPSPPGRVHVQLGLSLGI 112
P+PP + + LGI
Sbjct: 573 VMPPTPPPQGEYLPDMGLGI 592
Score = 31.2 bits (69), Expect = 0.19
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 36 GSGPRWAPAGPGPPSLT-VQDPG-------RGHSSSPDALLPDAR---CPCPGVPSPGSQ 84
G G + P PGPP L + PG RG P AL P PG+ P +
Sbjct: 332 GKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGE 391
Query: 85 PVLLSLPLRRSPSPPGRV 102
P L +P PPG +
Sbjct: 392 PGLPGIP--GPMGPPGAI 407
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 14/63 (22%)
Query: 38 GPRWAPAGPGPPSLTVQDPGRGHSSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPS 97
GP+ P PG L +G P P PG+P P +P L P
Sbjct: 480 GPKGEPGIPGDQGL------QGPPGIPGIGGPSGPIGPPGIPGPKGEPGL--------PG 525
Query: 98 PPG 100
PPG
Sbjct: 526 PPG 528
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 36.2 bits (82), Expect = 0.006
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 38 GPRWAPAGPGPPSLT-VQDPG----RGHSSSPDALLPDARCPCPGVPSPGSQPVLLSLPL 92
GP+ P PGPP + PG G P AL P + PG+P P P P
Sbjct: 516 GPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQ---PGLPGPPGPPGPPGPPA 572
Query: 93 RRSPSPPGRVHVQLGLSLGI 112
P+PP + + LGI
Sbjct: 573 VMPPTPPPQGEYLPDMGLGI 592
Score = 31.2 bits (69), Expect = 0.19
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 36 GSGPRWAPAGPGPPSLT-VQDPG-------RGHSSSPDALLPDAR---CPCPGVPSPGSQ 84
G G + P PGPP L + PG RG P AL P PG+ P +
Sbjct: 332 GKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGE 391
Query: 85 PVLLSLPLRRSPSPPGRV 102
P L +P PPG +
Sbjct: 392 PGLPGIP--GPMGPPGAI 407
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 14/63 (22%)
Query: 38 GPRWAPAGPGPPSLTVQDPGRGHSSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPS 97
GP+ P PG L +G P P PG+P P +P L P
Sbjct: 480 GPKGEPGIPGDQGL------QGPPGIPGIGGPSGPIGPPGIPGPKGEPGL--------PG 525
Query: 98 PPG 100
PPG
Sbjct: 526 PPG 528
>gi|239755710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 35.8 bits (81), Expect = 0.008
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 27 RVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGHSSSPDALLPDARC-PCPGVPSPGSQP 85
R Q G+ PR P G GP + +PG G +L +R PG+P QP
Sbjct: 131 RTRLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQP 190
Query: 86 VLLSLPLRRSPSP-------PGRV 102
L LP P P PGR+
Sbjct: 191 --LRLPYLAPPGPHDPTSRGPGRL 212
>gi|32483397 dopamine receptor D4 [Homo sapiens]
Length = 419
Score = 35.4 bits (80), Expect = 0.010
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 29 LAQRRQL-GSGPRWAPAGPGPPSLTVQDPGRGHSSSPDALLPDARCPCPGVP----SPGS 83
+A+R +L G PR P+GPGPPS T P D PD P PG+P P
Sbjct: 224 VARRAKLHGRAPR-RPSGPGPPSPTPPAP----RLPQDPCGPDCAPPAPGLPRGPCGPDC 278
Query: 84 QPVLLSLP 91
P SLP
Sbjct: 279 APAAPSLP 286
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 35.4 bits (80), Expect = 0.010
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 17/111 (15%)
Query: 2 QLPLPSRAQGL--LPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRG 59
Q P P Q L L P A RA + Q G+ PR P G GP + +PG G
Sbjct: 109 QSPGPCAPQALASLLGPGKAGCRARL-----QGGSSGASPRRLPGGRGPAAAFAVEPGTG 163
Query: 60 HSSSPDALLPDARC-PCPGVPSPGSQPVLLSLPLRRSPSP-------PGRV 102
+L +R PG+P QP L +P P P PGR+
Sbjct: 164 QRPRNTSLAQASRSGTVPGLPPASLQP--LRVPYFAPPGPHDPTSRGPGRL 212
>gi|33356170 myosin IXB isoform 1 [Homo sapiens]
Length = 2157
Score = 35.4 bits (80), Expect = 0.010
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 50 SLTVQDPGRGHSSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPS 97
SL + GRG S P P PCPG P+P P + + P RR S
Sbjct: 2007 SLLEERAGRGASEGP----PAPALPCPGAPTPSPLPTVAAPPRRRPSS 2050
>gi|33186901 hypothetical protein LOC359845 [Homo sapiens]
Length = 214
Score = 35.4 bits (80), Expect = 0.010
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 28/92 (30%)
Query: 5 LPSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGHSSSP 64
L S GL P PS +HW A AG G G +++P
Sbjct: 24 LDSPDSGLPPSPSPSHWGLA-------------------AGGG---------GGERAAAP 55
Query: 65 DALLPDARCPCPGVPSPGSQPVLLSLPLRRSP 96
L PDA P PSP S P+ LR P
Sbjct: 56 GTLEPDAAAATPAAPSPASLPLAPGCALRLCP 87
>gi|239753497 PREDICTED: hypothetical protein [Homo sapiens]
Length = 163
Score = 35.0 bits (79), Expect = 0.013
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 9 AQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPP---SLTVQDPGRGHSSSPD 65
A GL PEP A R + A +R++G P +P + DPGR +S+P
Sbjct: 62 AAGLFPEPQLA--RQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQTFLASDPGRAGNSAPA 119
Query: 66 ALLPDARCPCPGVPSPGSQP 85
L R P P PG +P
Sbjct: 120 LFLAGLRLPSHSRP-PGKRP 138
>gi|46409372 G protein-coupled receptor 153 [Homo sapiens]
Length = 609
Score = 35.0 bits (79), Expect = 0.013
Identities = 36/114 (31%), Positives = 44/114 (38%), Gaps = 25/114 (21%)
Query: 16 PSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGHSSSPDALLPDA---- 71
PS A R+A + + L SGPR A PP + PG G S+ +LLPDA
Sbjct: 449 PSRARRRSAESLLSLRPSALDSGPRGAR--DSPPGSPRRRPGPGPRSASASLLPDAFALT 506
Query: 72 --RC----------PCPGVPS------PGSQPVLLSLPLRRSPSPPGRVHVQLG 107
C P P P+ PG P S +RSP P H G
Sbjct: 507 AFECEPQALRRPPGPFPAAPAAPDGADPGEAPTPPS-SAQRSPGPRPSAHSHAG 559
>gi|42544243 dynamin 3 isoform a [Homo sapiens]
Length = 863
Score = 34.7 bits (78), Expect = 0.017
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 48 PPSLTVQDPGRGHSSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPSPP 99
PPS T Q R S+P A R P P +PSPG +P R P PP
Sbjct: 765 PPSPTTQR--RPTLSAPLARPTSGRGPAPAIPSPGPHSGAPPVPFRPGPLPP 814
Score = 30.8 bits (68), Expect = 0.24
Identities = 29/92 (31%), Positives = 33/92 (35%), Gaps = 17/92 (18%)
Query: 14 PEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGHSSSPDALLPDARC 73
P PS R R G GP A PGP HS +P +P
Sbjct: 764 PPPSPTTQRRPTLSAPLARPTSGRGPAPAIPSPGP-----------HSGAPP--VPFRPG 810
Query: 74 PCPGVPSP----GSQPVLLSLPLRRSPSPPGR 101
P P PS G+ P + S P R PS P R
Sbjct: 811 PLPPFPSSSDSFGAPPQVPSRPTRAPPSVPSR 842
>gi|209915561 dynamin 3 isoform b [Homo sapiens]
Length = 859
Score = 34.7 bits (78), Expect = 0.017
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 48 PPSLTVQDPGRGHSSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPSPP 99
PPS T Q R S+P A R P P +PSPG +P R P PP
Sbjct: 761 PPSPTTQR--RPTLSAPLARPTSGRGPAPAIPSPGPHSGAPPVPFRPGPLPP 810
Score = 30.8 bits (68), Expect = 0.24
Identities = 29/92 (31%), Positives = 33/92 (35%), Gaps = 17/92 (18%)
Query: 14 PEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGHSSSPDALLPDARC 73
P PS R R G GP A PGP HS +P +P
Sbjct: 760 PPPSPTTQRRPTLSAPLARPTSGRGPAPAIPSPGP-----------HSGAPP--VPFRPG 806
Query: 74 PCPGVPSP----GSQPVLLSLPLRRSPSPPGR 101
P P PS G+ P + S P R PS P R
Sbjct: 807 PLPPFPSSSDSFGAPPQVPSRPTRAPPSVPSR 838
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 34.7 bits (78), Expect = 0.017
Identities = 27/94 (28%), Positives = 32/94 (34%), Gaps = 17/94 (18%)
Query: 23 AAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQDPGRGHSSSPDALLPDARCPCPGVPSPG 82
AAV Q+ SG A G L++ P SP L + P P P PG
Sbjct: 507 AAVPAPGRNNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLRRAVKKPAPAPPKPG 566
Query: 83 S-----------------QPVLLSLPLRRSPSPP 99
+ P L P RSPSPP
Sbjct: 567 NPPPGHPGGQSSSGTSQHPPSLSPKPPTRSPSPP 600
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 34.7 bits (78), Expect = 0.017
Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 11 GLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAG----PGPPSLTVQDPGRGHSSSP-- 64
G L E SS R + R L Q + G R +P P P + P R P
Sbjct: 306 GRLRELSSLQGR--ILRTLLQEQARSGGQRHSPLSQRHSPAPQCPSPSPPARAAPPCPPC 363
Query: 65 DALLPDARCPCPGVPSPGSQPVLLS------LPLRRSPSPP 99
+ +P R P P PSP + S +P RRSP PP
Sbjct: 364 QSPVPQRRSPVPPCPSPQQRRSPASPSCPSPVPQRRSPVPP 404
Score = 28.9 bits (63), Expect = 0.92
Identities = 32/110 (29%), Positives = 39/110 (35%), Gaps = 22/110 (20%)
Query: 2 QLPLPSRAQGLLPEPSSAHWRAAVE----RVLAQRRQLGSGPRWAPAGPGPPSLTVQDPG 57
Q P+P R + P PS R+ + QRR P PPS P
Sbjct: 364 QSPVPQRRSPVPPCPSPQQRRSPASPSCPSPVPQRRS-----------PVPPSCQSPSPQ 412
Query: 58 RGHSSSPDALLPDARCPCPGVPSPGSQPVLLSLPLRRSPSPPGRVHVQLG 107
R P P R P P P PG + +L R PP HV+ G
Sbjct: 413 RRSPVPPSCPAPQPRPPPP--PPPGER----TLAERAYAKPPSH-HVKAG 455
>gi|142976757 immediate early response 5 [Homo sapiens]
Length = 327
Score = 34.3 bits (77), Expect = 0.022
Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 16/107 (14%)
Query: 6 PSRAQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPPSLTVQ-------DPGR 58
P +A E ++ W E A RR G P PG P+ T + P
Sbjct: 147 PRQAAAREAEGTAGGWGVFPEVSRAARRPCGC-PLGGEDPPGTPAATPRAACCCAPQPAE 205
Query: 59 GHSSSPDALLPDARCPC------PGVPSPGSQPVLLSLPLRRSPSPP 99
+P A+ P RC G P+PGS P L P R PP
Sbjct: 206 DEPPAPPAVCPRKRCAAGVGGGPAGCPAPGSTP--LKKPRRNLEQPP 250
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.137 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,141,553
Number of Sequences: 37866
Number of extensions: 511596
Number of successful extensions: 3909
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 534
Number of HSP's that attempted gapping in prelim test: 3085
Number of HSP's gapped (non-prelim): 1326
length of query: 112
length of database: 18,247,518
effective HSP length: 82
effective length of query: 30
effective length of database: 15,142,506
effective search space: 454275180
effective search space used: 454275180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.