Guide to the Human Genome
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Search of human proteins with 239743279

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
         (384 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ...   806   0.0  
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ...   806   0.0  
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]           806   0.0  
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ...   429   e-120
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             67   4e-11
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]            57   2e-08
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]            57   2e-08
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    57   2e-08
gi|163965366 nascent polypeptide-associated complex alpha subuni...    57   4e-08
gi|149158690 HLA-B associated transcript-2 [Homo sapiens]              56   6e-08
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]            55   8e-08
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]            55   8e-08
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]         55   1e-07
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]           54   2e-07
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]           54   2e-07
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]           54   2e-07
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    54   2e-07
gi|169172231 PREDICTED: hypothetical protein [Homo sapiens]            54   3e-07
gi|169170975 PREDICTED: hypothetical protein [Homo sapiens]            54   3e-07
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap...    53   4e-07
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    53   5e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    53   5e-07
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ...    53   5e-07
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ...    53   5e-07
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]            53   5e-07
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]            52   7e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      52   9e-07
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]            52   9e-07
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]            52   9e-07
gi|42821110 hypothetical protein LOC340602 [Homo sapiens]              52   9e-07

>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
           sapiens]
          Length = 384

 Score =  806 bits (2081), Expect = 0.0
 Identities = 384/384 (100%), Positives = 384/384 (100%)

Query: 1   MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS 60
           MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS
Sbjct: 1   MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS 60

Query: 61  PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120
           PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR
Sbjct: 61  PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120

Query: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
           PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ
Sbjct: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180

Query: 181 PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD 240
           PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD
Sbjct: 181 PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD 240

Query: 241 FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV 300
           FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV
Sbjct: 241 FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV 300

Query: 301 SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK 360
           SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK
Sbjct: 301 SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK 360

Query: 361 PYGSSSGPLLLLKTLLWLSYPEES 384
           PYGSSSGPLLLLKTLLWLSYPEES
Sbjct: 361 PYGSSSGPLLLLKTLLWLSYPEES 384


>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
           sapiens]
          Length = 384

 Score =  806 bits (2081), Expect = 0.0
 Identities = 384/384 (100%), Positives = 384/384 (100%)

Query: 1   MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS 60
           MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS
Sbjct: 1   MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS 60

Query: 61  PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120
           PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR
Sbjct: 61  PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120

Query: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
           PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ
Sbjct: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180

Query: 181 PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD 240
           PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD
Sbjct: 181 PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD 240

Query: 241 FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV 300
           FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV
Sbjct: 241 FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV 300

Query: 301 SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK 360
           SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK
Sbjct: 301 SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK 360

Query: 361 PYGSSSGPLLLLKTLLWLSYPEES 384
           PYGSSSGPLLLLKTLLWLSYPEES
Sbjct: 361 PYGSSSGPLLLLKTLLWLSYPEES 384


>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score =  806 bits (2081), Expect = 0.0
 Identities = 384/384 (100%), Positives = 384/384 (100%)

Query: 1   MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS 60
           MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS
Sbjct: 1   MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS 60

Query: 61  PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120
           PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR
Sbjct: 61  PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120

Query: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
           PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ
Sbjct: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180

Query: 181 PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD 240
           PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD
Sbjct: 181 PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD 240

Query: 241 FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV 300
           FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV
Sbjct: 241 FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV 300

Query: 301 SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK 360
           SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK
Sbjct: 301 SSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLK 360

Query: 361 PYGSSSGPLLLLKTLLWLSYPEES 384
           PYGSSSGPLLLLKTLLWLSYPEES
Sbjct: 361 PYGSSSGPLLLLKTLLWLSYPEES 384


>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
           sapiens]
          Length = 209

 Score =  429 bits (1104), Expect = e-120
 Identities = 206/208 (99%), Positives = 207/208 (99%)

Query: 1   MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS 60
           MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS
Sbjct: 1   MVMSGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFS 60

Query: 61  PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120
           PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR
Sbjct: 61  PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120

Query: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
           PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ
Sbjct: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180

Query: 181 PPPLTCRRCRAAPRRSARPFRRPGLPLK 208
           PPPLTCRRCRAAPRRSARPFRRPGLP +
Sbjct: 181 PPPLTCRRCRAAPRRSARPFRRPGLPCR 208


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 91/339 (26%), Positives = 116/339 (34%), Gaps = 57/339 (16%)

Query: 41  SGTCRLTRSRKSRLERGTFSPESAAGTEVSGAPHP--------DSRTRPAARPPHPRTRS 92
           S  C+     K +    T SP   +    SG+ H         DSR+     P H   R 
Sbjct: 228 SSKCKRKEKNKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKH---RD 284

Query: 93  PPGRSGSGTTFSAVPPRPS--------QHQSGSRLRPAAPGPRPGCSSAR----ASPAPA 140
              ++GS  +  +  P PS        Q   GS  R  A G RPG + +     +SP+P 
Sbjct: 285 EGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPR 344

Query: 141 APQAAARTAPGRAASGG------SGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPR 194
               AA  AP   A G       S P S+G+G    G    R   +      R   +APR
Sbjct: 345 VRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPR 404

Query: 195 RSARPFRRPGLP-----------LKSRPGSGTGARSCG-----TWGSGGGPGTAAASSPS 238
           R  R   RP  P             S  GSG GA   G       G GG    A    P 
Sbjct: 405 RRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPR 464

Query: 239 ADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGG 298
           A  +S SP P    G   R  G  G+  S   G  P     S +P + R R         
Sbjct: 465 ARPASTSPSP----GAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSR--------S 512

Query: 299 GVSSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPK 337
               P  P  +P    P S  +   G   HS   A + +
Sbjct: 513 AEKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRAR 551


>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 480

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 76/266 (28%), Positives = 97/266 (36%), Gaps = 42/266 (15%)

Query: 80  RPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAP 139
           RP ++PP P+  + P      T   A    P + +  SR       PR    +AR  PAP
Sbjct: 193 RPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASR------EPRLRSRAARPPPAP 246

Query: 140 AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARP 199
             P A +R +  RAA G  GPG  G         P   GG+ P       RAAP   AR 
Sbjct: 247 G-PGALSRASRSRAA-GRPGPGFHGGEKAAAPRAPGGGGGRNPGAL---GRAAPPSRARQ 301

Query: 200 FRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVR 259
                           G   C T G   G    A SS          QP    G   R R
Sbjct: 302 -------------DAWGLSGCATVGLRRGDCDRAGSS----------QPPATSGNGERCR 338

Query: 260 GCGGRRRSNGQGTQPGCRLL-SPA-PPRRRYRKPL---TLSFGGGVSSPTH-PVVAPRRH 313
            C  RRR  G G   G      PA PP RR+ + +    L  G G  S     +  P R 
Sbjct: 339 FCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRR 398

Query: 314 FPRSVPRFPAG--FRTHSLGTAPKPK 337
              ++ RF  G   +++ + T   P+
Sbjct: 399 VHGALQRFGGGRNLKSNWMSTTRTPR 424


>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 426

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 101/341 (29%), Positives = 122/341 (35%), Gaps = 81/341 (23%)

Query: 57  GTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRS------PPGRSGSGTTFSAVPPRP 110
           GT +P  A  +  + AP P     PA + P  R R         G +G G    A+P   
Sbjct: 27  GTDAPGPAVCSPTARAPPP---ILPAPQRPPTRAREWEGAAWAAGATGVGAALLALPGSR 83

Query: 111 SQHQSGSRLRPAAPGPRPGCSSARAS----PAP----------AAPQAAARTAPGRAAS- 155
              +     R A+PGP PG   AR S    P P            P AAAR AP R  S 
Sbjct: 84  RLGRVPLTFREASPGPAPGAPRARGSCGREPGPRRRRAPSSAGKRPAAAARAAPPRQRSL 143

Query: 156 GGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRR-CRAAPRRSARPFRRPGLPLKSRPGSG 214
               P S G        RPS  G   P   CRR CR   RR  RP  +P  PL+ R GS 
Sbjct: 144 ARCLPRSVGS-----CVRPS-VGPSLPRRHCRRHCRCHCRR--RPLPKPP-PLQPRLGSA 194

Query: 215 TGARSCGTWGSGGGPGTA---------AASSPSADFSSDSPQPIIIFGGALRVRGCGGRR 265
           +  R          P  +         A  SP+       P P  +  G   V   G RR
Sbjct: 195 SPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPA---GHGLPLPRSLSRGGEVV---GARR 248

Query: 266 RSNGQ-----GTQPGCRLLSP-------APPR-------RRYRKPLTLSFGGGVSSPTHP 306
           R  G+     G + GC L SP       AP R       R++RK      GGG      P
Sbjct: 249 RRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKR-----GGG------P 297

Query: 307 VVAPRRHFPRSVPRFPAGFRTHSLGTA--PKPKCWKHSQPW 345
            V+PR        R     R     T   P P  W+   P+
Sbjct: 298 GVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPY 338



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 83/318 (26%), Positives = 107/318 (33%), Gaps = 45/318 (14%)

Query: 4   SGPGPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFSPES 63
           + PGP    P   G   R  G RR     SA  R  ++   R    R+  L R       
Sbjct: 95  ASPGPAPGAPRARGSCGREPGPRRRRAPSSAGKRPAAAA--RAAPPRQRSLARCLPRSVG 152

Query: 64  AAGTEVSGAPHPDSRTRPAAR---PPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLR 120
           +      G   P    R   R      P  + PP +   G   SA PPR +   +GSR  
Sbjct: 153 SCVRPSVGPSLPRRHCRRHCRCHCRRRPLPKPPPLQPRLG---SASPPRLAAPLAGSRAP 209

Query: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
             +P PR     A  SP               A  G   P S  +G + VGAR  R G +
Sbjct: 210 SLSPFPRRCRRRAERSP---------------AGHGLPLPRSLSRGGEVVGARRRRGGEE 254

Query: 181 PPPLTCRRCRAAPRRSARPFRRPGLPL-KSRPGSGTGARSCGTWGS-GGGPGTAAASSPS 238
                 RR R   RR       P +P   + PG     R+   W   GGGPG +      
Sbjct: 255 ------RRVRG--RRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRGGGPGVSPREGAQ 306

Query: 239 ADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGC--RLLSPAPPRRRYRKPLTLSF 296
            +       P        R RG     R +    Q G   R +  A PR           
Sbjct: 307 GEGVRGGVTP--------RARGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAPSAEAEEV 358

Query: 297 GGG--VSSPTHPVVAPRR 312
            GG   S+PT+  ++ RR
Sbjct: 359 PGGHTASNPTYEPLSSRR 376



 Score = 39.3 bits (90), Expect = 0.006
 Identities = 58/214 (27%), Positives = 72/214 (33%), Gaps = 56/214 (26%)

Query: 114 QSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGAR 173
           + G R  P    P PGC          APQ     APG A      P +R          
Sbjct: 2   ERGQRFTPHPRTPAPGCPE-------VAPQPEGTDAPGPAV---CSPTARA--------- 42

Query: 174 PSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGG----P 229
                  PPP+       AP+R          P ++R   G  A + G  G G      P
Sbjct: 43  -------PPPIL-----PAPQRP---------PTRAREWEG-AAWAAGATGVGAALLALP 80

Query: 230 GTAAASSPSADFSSDSPQPIIIFGGALRVRG-CG------GRRRSNGQGTQPGCRLLSPA 282
           G+         F   SP P     GA R RG CG       RR  +  G +P     +  
Sbjct: 81  GSRRLGRVPLTFREASPGPA---PGAPRARGSCGREPGPRRRRAPSSAGKRPAAAARAAP 137

Query: 283 PPRRRYRKPLTLSFGGGVSSPTHPVVAPRRHFPR 316
           P +R   + L  S G  V     P + PRRH  R
Sbjct: 138 PRQRSLARCLPRSVGSCVRPSVGPSL-PRRHCRR 170


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 70/228 (30%), Positives = 82/228 (35%), Gaps = 55/228 (24%)

Query: 73  PHPDSRTRPAARPP--HPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGC 130
           PH   +  P  +PP   P    PP            PP P Q  S   +    PGP PG 
Sbjct: 65  PHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQ--QQQPPPPPQ-DSSKPVVAQGPGPAPGV 121

Query: 131 SSARASPAPAAPQAAARTAPGRAASGGSGPG----------SRGQG-------SDQVGAR 173
            SA     PA+  A   T P   A  GSGPG          S   G       S  V   
Sbjct: 122 GSA----PPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTT 177

Query: 174 PSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAA 233
           P +AGG PPP       A P     P + PG      PG   G +  G    GGGPG   
Sbjct: 178 PPQAGGPPPPPA-----AVPGPGPGPKQGPG------PGGPKGGKMPGGPKPGGGPG--- 223

Query: 234 ASSPSADFSSDSPQPIIIFGGALRVRGCGGRR------RSNGQGTQPG 275
            S+P        P+P    GG  R    GGR+      + + QG  PG
Sbjct: 224 LSTPGG-----HPKPPHRGGGEPR----GGRQHHPPYHQQHHQGPPPG 262



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 40/112 (35%), Positives = 44/112 (39%), Gaps = 9/112 (8%)

Query: 70  SGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPG 129
           SGAP P S   P   PP   T +PPG        S VP  P Q         A PGP PG
Sbjct: 139 SGAP-PGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPG 197

Query: 130 CSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQP 181
               +  P P  P+      PG    GG GPG    G       P R GG+P
Sbjct: 198 ---PKQGPGPGGPKGG--KMPGGPKPGG-GPGLSTPGGHP--KPPHRGGGEP 241



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 40/122 (32%), Positives = 49/122 (40%), Gaps = 19/122 (15%)

Query: 71  GAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGC 130
           G+  P S + P A PP   + +PPG SG G       P P+   + +   P AP P P  
Sbjct: 122 GSAPPASSSAPPATPP--TSGAPPG-SGPG-------PTPTPPPAVTSAPPGAPPPTPPS 171

Query: 131 SSARASPAPAA---PQAAARTAPGRAASGGSGPGSRGQGSDQVGARP------SRAGGQP 181
           S    +P  A    P  AA   PG     G GPG    G    G +P      S  GG P
Sbjct: 172 SGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHP 231

Query: 182 PP 183
            P
Sbjct: 232 KP 233


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 71/278 (25%), Positives = 100/278 (35%), Gaps = 44/278 (15%)

Query: 73   PHPDSRTRPAARPPHPR--TRSPPGRSGSGTTFSAVPPRP-----SQHQSGSRLRPAAPG 125
            P   + T PAA PP P+    +PP + G+ TT +A PP P     +    G+   PAA  
Sbjct: 1144 PPKGAPTTPAATPPSPKGGLATPPPK-GAPTTPAATPPSPKGGLATPSPKGAPTTPAATP 1202

Query: 126  PRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGG--QPPP 183
            P P      A+P+P          P     G + P  +G  +      PS  GG   PPP
Sbjct: 1203 PSP--KGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPP 1260

Query: 184  LTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSS 243
                +    P  +  P  + GL      G+   A         GGP T+         ++
Sbjct: 1261 ----KGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPP-SPKGGPATSPPKGAPTPPAA 1315

Query: 244  DSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTL-SFGGGVSS 302
              P P          +G  G     G  T P    ++P  P+     P T  S  GG ++
Sbjct: 1316 TPPSP----------KGSPGTPPPKGAPTPPA---VTPPSPKGTPTLPATTPSSKGGPTT 1362

Query: 303  PTHPVVAPRRHFPRSVPRFPAGFRTHSLG---TAPKPK 337
            P+           +  P  PA   +H  G   T P PK
Sbjct: 1363 PS----------SKEGPTPPAATPSHKGGPAMTPPSPK 1390



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 83/307 (27%), Positives = 108/307 (35%), Gaps = 40/307 (13%)

Query: 60   SPESAAGT-EVSGAPHPDSRTRPAARPPHPRTR-SPPGRSGSGTTFSAVPPRP-----SQ 112
            SP+    T    GAP     T PAA PP P+   + P   G+ TT +A PP P     + 
Sbjct: 1181 SPKGGLATPSPKGAP-----TTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATP 1235

Query: 113  HQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA 172
               G+   PAA  P P      A+P P          P     G + P  +G  +  V  
Sbjct: 1236 SPKGAPTTPAATPPSP--KGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVT 1293

Query: 173  RPSRAGG----------QPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPG-SGTGARSCG 221
             PS  GG           PP  T    + +P  +  P   P  P  + P   GT      
Sbjct: 1294 PPSPKGGPATSPPKGAPTPPAATPPSPKGSP-GTPPPKGAPTPPAVTPPSPKGTPTLPAT 1352

Query: 222  TWGSGGGPGTAAAS---SPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRL 278
            T  S GGP T ++    +P A   S    P +      R       +   G  T P    
Sbjct: 1353 TPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPK---GDPTSPAVIP 1409

Query: 279  LSP--APPRRRYRKPLTLSFGGGVSSPTHPVV----APRRHFPRSVPRFPA--GFRTHSL 330
            LSP  AP     R+       G ++ P    V    AP    P+  P  P+  G  T   
Sbjct: 1410 LSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPA 1469

Query: 331  GTAPKPK 337
             T P PK
Sbjct: 1470 VTPPSPK 1476



 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 75/285 (26%), Positives = 99/285 (34%), Gaps = 36/285 (12%)

Query: 73   PHPDSRTRPAARPPHPRTR-SPPGRSGSGTTFSAVPPRP-----SQHQSGSRLRPAAPGP 126
            P   + T PAA PP P+   + P   G+ TT +A PP P     +    G+   PAA  P
Sbjct: 1167 PPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPP 1226

Query: 127  RPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTC 186
             P      A+P+P          P     G + P  +G  +      PS  GG   P   
Sbjct: 1227 SP--KGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATP--- 1281

Query: 187  RRCRAAPRRS-ARPFRRPGLPLKSRP-GSGT--GARSCGTWGSGGGPGTAAASSPSADFS 242
               + AP  +   P    G P  S P G+ T   A      GS G P    A +P A  +
Sbjct: 1282 -PHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPA-VT 1339

Query: 243  SDSPQPIIIFGGALRVRGCGGRRRSNGQGTQP--------GCRLLSPAPPRRRYRKPLTL 294
              SP+              G    S+ +G  P        G   ++P  P+R    P   
Sbjct: 1340 PPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIP--- 1396

Query: 295  SFGGGVSSPTHPVVAPRRHFPRSVPRFPA---GFRTHSLGTAPKP 336
                    PT P V P    P+  P  P    G  T S G    P
Sbjct: 1397 ---SPKGDPTSPAVIPLS--PKKAPATPVTREGAATPSKGDLTPP 1436



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 78/316 (24%), Positives = 107/316 (33%), Gaps = 51/316 (16%)

Query: 49   SRKSRLERGTFSPESA-AGTEVSGAPHPDSRTRPAARPPHPRTR-SPPGRSGSGTTFSAV 106
            S   +  R T +P+   A     GAP P     PAA PP P+   + P    + T  +A 
Sbjct: 915  SSSPKKARATPAPKGIPASPSPKGAPTP-----PAATPPSPKGGPATPSPKWAPTPPAAT 969

Query: 107  PPRP-----SQHQSGSRLRPAA--PGPR--PGCSSARASPAPAAPQAAARTAPGRAASGG 157
            PP P     +    G+   PAA  P P+  P   S + +P P A      T P    S  
Sbjct: 970  PPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAV-----TPPSPKGSPA 1024

Query: 158  SGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGA 217
            + P  +G  +             PP  T    + +P  +  P   P  P  + P S  G 
Sbjct: 1025 ATPFPKGAST-------------PPAATPPSPKGSPAATPLPKGAPTTPAATLP-SPKGG 1070

Query: 218  RSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRR--SNGQGTQPG 275
             +  +      P  A   SP    ++ SP+   +   A      GG       G  T P 
Sbjct: 1071 PATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPA 1130

Query: 276  CRLLSP------APPRRRYRKPLTL--SFGGGVS------SPTHPVVAPRRHFPRSVPRF 321
                SP       PP+     P     S  GG++      +PT P   P           
Sbjct: 1131 ATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPS 1190

Query: 322  PAGFRTHSLGTAPKPK 337
            P G  T    T P PK
Sbjct: 1191 PKGAPTTPAATPPSPK 1206



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 74/302 (24%), Positives = 101/302 (33%), Gaps = 42/302 (13%)

Query: 58   TFSPESAAGTEVSGAPHPD---SRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQ 114
            T  P+      V   P P    +   P   P    T S P ++ +      +P  PS   
Sbjct: 879  TLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSP-- 936

Query: 115  SGSRLRPAA--PGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA 172
             G+   PAA  P P+ G ++     AP  P A     P     G + P  +G  +     
Sbjct: 937  KGAPTPPAATPPSPKGGPATPSPKWAPTPPAA----TPPSPKGGPATPSPKGAPTPPAAT 992

Query: 173  RPSRAGG----------QPPPLTCRRCRAAPRRSARPF-RRPGLPLKSRPGSGTGARSCG 221
             PS  GG           PP +T    + +P  +A PF +    P  + P S  G+    
Sbjct: 993  PPSPKGGPATPSPKGAPTPPAVTPPSPKGSP--AATPFPKGASTPPAATPPSPKGS-PAA 1049

Query: 222  TWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSP 281
            T    G P T AA+ PS      +P       GA             G  T P  +  +P
Sbjct: 1050 TPLPKGAPTTPAATLPSPKGGPATPS----LKGAPTPPAATPPSPKGGPAT-PSPK-GAP 1103

Query: 282  APPRRRYRKPLTLSFGGGVSSPTH------PVVAPRRHFPRSVPRFPAGFRTHSLGTAPK 335
             PP      P      GG+++P H      P   P           P G  T    T P 
Sbjct: 1104 MPPAATPPSP-----KGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPS 1158

Query: 336  PK 337
            PK
Sbjct: 1159 PK 1160



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 68/316 (21%), Positives = 97/316 (30%), Gaps = 51/316 (16%)

Query: 56   RGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPG--------------RSGSGT 101
            +G  +  S  G   + A  P S     A PP     +PP                 G+  
Sbjct: 1229 KGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPN 1288

Query: 102  TFSAVPPRP-----SQHQSGSRLRPAAPGPRPGCSSARASP--APAAPQAAARTAPGRAA 154
                 PP P     +    G+   PAA  P P  S     P  AP  P     +  G   
Sbjct: 1289 PAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPT 1348

Query: 155  SGGSGPGSRG--------QGSDQVGARPSRAGGQP-PPLTCRRCRAAPRRSARPFRRPGL 205
               + P S+G        +G     A PS  GG    P + +R  A P     P     +
Sbjct: 1349 LPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVI 1408

Query: 206  PLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRR 265
            PL  +    T     G           AA+    D +  +  P+ +          GG  
Sbjct: 1409 PLSPKKAPATPVTREG-----------AATPSKGDLTPPAVTPVSLKKAPATSAPKGGPA 1457

Query: 266  RSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFG--------GGVSSPTHPVVAPRRHFPRS 317
              + +G      +  P+P      K +  S            + +PT P V P    P+ 
Sbjct: 1458 TPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSS--PKE 1515

Query: 318  VPRFPAGFRTHSLGTA 333
            VP  P+  R     TA
Sbjct: 1516 VPATPSSRRDPIAPTA 1531


>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
          Length = 2157

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 62/202 (30%), Positives = 79/202 (39%), Gaps = 31/202 (15%)

Query: 19   GARACGGRRAN--FSLSAAFRTCSSGTCRLTRSRKSRLERGTFSPESAAGTEVSGAPHPD 76
            G  +C GR     F+    FR    G  R  RSR+ R  R  F  +   G    G  HP 
Sbjct: 1019 GPTSCRGRGRGEYFARGRGFRGTYGGRGRGARSREFRSYR-EFRGDDGRGGGTGGPNHP- 1076

Query: 77   SRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQS-------GSRLRPA---APGP 126
                     P PR R+       G+ +  +P R  Q  S        S L P+   AP P
Sbjct: 1077 ---------PAPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEAPTP 1127

Query: 127  RPGCSSARASPAPAAPQAAARTAPGR-AASGGSGPGSRGQGSDQVGARPSRAGGQPPPLT 185
            + G +  +   AP  P A    AP R  A GG     RG     V +R  R GG+PPP  
Sbjct: 1128 KEG-TLTQVPLAPPPPGAPPSPAPARFTARGGRVFTPRG-----VPSRRGRGGGRPPPQV 1181

Query: 186  CRRCRAAPRRSARPFRRPGLPL 207
            C    + P +S  P + P  PL
Sbjct: 1182 CPGW-SPPAKSLAPKKPPTGPL 1202



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 65/262 (24%), Positives = 88/262 (33%), Gaps = 51/262 (19%)

Query: 68  EVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVP---PRPSQHQSGSRLRPAAP 124
           E  GAP    +  PAA P  P T +PP          AVP   P P      S   P   
Sbjct: 495 EKFGAPDKRLKAEPAAPPAAPSTPAPP---------PAVPKELPAPPAPPPASAPTPETE 545

Query: 125 GPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVG----ARPSRAGGQ 180
              P    A+A PA + P      AP    SGG    S   GS +        PS+ G +
Sbjct: 546 PEEP----AQAPPAQSTPTPGVAAAP-TLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPE 600

Query: 181 PPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSAD 240
           PP                P   P +P     G G G          G P    +  P   
Sbjct: 601 PP------------EEVPPPTTPPVPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPR-- 646

Query: 241 FSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGV 300
           F     + ++             +++   Q  Q G    +P PP     +P+TL   G V
Sbjct: 647 FQRQQQEQLL-----------KQQQQHQWQQHQQGSAPPTPVPPSP--PQPVTL---GAV 690

Query: 301 SSPTHPVVAPRRHFPRSVPRFP 322
            +P  P   P+  +P ++ R P
Sbjct: 691 PAPQAPPPPPKALYPGALGRPP 712



 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 66/257 (25%), Positives = 87/257 (33%), Gaps = 21/257 (8%)

Query: 63   SAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPA 122
            S  G   +GAP P     P   P       PPG        +  P +    +  ++L   
Sbjct: 837  SYPGFPENGAPGPPISRFPLEEPGPRPLPWPPGSDEVAKIQTPPPKKEPPKEETAQLTGP 896

Query: 123  APGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGS--RGQGSDQVGARPSRAG-- 178
              G +P          P  P+  +RT        G  PGS  RG   ++ GA P RAG  
Sbjct: 897  EAGRKPARGVGSGGQGPPPPRRESRT----ETRWGPRPGSSRRGIPPEEPGAPPRRAGPI 952

Query: 179  GQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPS 238
             +PPP T  +    P +          P K  P   T  +  G   +      + A    
Sbjct: 953  KKPPPPT--KVEELPPKPLEQGDETPKPPKPDPLKITKGKLGGPKETPPNGNLSPAPRLR 1010

Query: 239  ADFSSDSPQPIIIFG---GALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRK-PLTL 294
             D+S +   P    G   G    RG G R    G+G     R        R YR+     
Sbjct: 1011 RDYSYERVGPTSCRGRGRGEYFARGRGFRGTYGGRGRGARSREF------RSYREFRGDD 1064

Query: 295  SFGGGVSSPTHPVVAPR 311
              GGG   P HP  APR
Sbjct: 1065 GRGGGTGGPNHP-PAPR 1080



 Score = 39.3 bits (90), Expect = 0.006
 Identities = 75/326 (23%), Positives = 106/326 (32%), Gaps = 61/326 (18%)

Query: 51   KSRLERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSP--PGRSGSGTTFSAVPP 108
            K +L  G  SP +  G+        +   RP  R  H R +    P R            
Sbjct: 1210 KEKLIPGPLSPVARGGSNGGSNVGMEDGERPRRRR-HGRAQQQDKPPRFRRLKQERENAA 1268

Query: 109  RPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGR----------AASGGS 158
            R S+ +    L  +APGP    ++   +PAP    A +     +           AS  S
Sbjct: 1269 RGSEGKPSLTLPASAPGPEEALTTVTVAPAPRRAAAKSPDLSNQNSDQANEEWETASESS 1328

Query: 159  GPGSRGQGSDQ-----------VGARPSRAGGQPPPLTCRR----CRAAPRRSARPF--R 201
               S  +G  +           VG      GG  P ++        + A   S R F  +
Sbjct: 1329 DFTSERRGDKEAPPPVLLTPKAVGTPGGGGGGAVPGISAMSRGDLSQRAKDLSKRSFSSQ 1388

Query: 202  RPGLPLKSR-PGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRG 260
            RPG+  ++R PG G  A S G+   GGG G    + P        P P            
Sbjct: 1389 RPGMERQNRRPGPGGKAGSSGSSSGGGGGGPGGRTGPGRGDKRSWPSP------------ 1436

Query: 261  CGGRRRSNGQGTQPGCRLLSPAPPRRR---------YRKPLTLSFG-GGVSSPTHPVVAP 310
               + RS     +P    L P PP            +  P  +      +SS    V AP
Sbjct: 1437 ---KNRSRPPEERPPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGSVTAP 1493

Query: 311  RRHFPRSVPRFPAGFRTHSLGTAPKP 336
              H     PR   G      G +P+P
Sbjct: 1494 GGH-----PRHKPGLPQAPQGPSPRP 1514



 Score = 38.1 bits (87), Expect = 0.013
 Identities = 57/244 (23%), Positives = 76/244 (31%), Gaps = 66/244 (27%)

Query: 88   PRTRSPPGRSGSGTT--FSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAA 145
            P+    PG  G G     SA+       ++    + +    RPG       P P     +
Sbjct: 1348 PKAVGTPGGGGGGAVPGISAMSRGDLSQRAKDLSKRSFSSQRPGMERQNRRPGPGGKAGS 1407

Query: 146  ARTAPGRAASGGSGPGSR-GQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPG 204
            + ++ G    GG GPG R G G     + PS      PP              RP   PG
Sbjct: 1408 SGSSSG---GGGGGPGGRTGPGRGDKRSWPSPKNRSRPP------------EERP---PG 1449

Query: 205  LPLKSRPGSGTG-------------------ARSCGTWGSGGGPGTAAASSPSADFSSDS 245
            LPL   P S +                    A+     GS   PG      P    +   
Sbjct: 1450 LPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGSVTAPGGHPRHKPGLPQAPQG 1509

Query: 246  P--------QPIIIFGGALR----------VRGCGGRRRSNGQGTQPGCRLLSPAPPRRR 287
            P        +P  +  G             VRG GG  R +          +SP PP+RR
Sbjct: 1510 PSPRPPTRYEPQRVNSGLSSDPHFEEPGPMVRGVGGTPRDSAG--------VSPFPPKRR 1561

Query: 288  YRKP 291
             R P
Sbjct: 1562 ERPP 1565



 Score = 30.8 bits (68), Expect = 2.1
 Identities = 37/136 (27%), Positives = 45/136 (33%), Gaps = 10/136 (7%)

Query: 112 QHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAAR-TAPGRAASGGSGPGSRGQGSDQV 170
           Q QS  +   A+    P      AS  PA+ Q      AP       SG  S  Q S   
Sbjct: 90  QEQSDPKSSDASTAQPPESQPLPASQTPASNQPKRPPAAPENTPLVPSGVKSWAQASVTH 149

Query: 171 GARPSRAGGQPPPLTCRRCR-------AAPRRSARPFRRPGLPLKSRPGSGTGARSCGTW 223
           GA     GG+   L  R  R       AA  +      R      S PG     ++  TW
Sbjct: 150 GAHGD--GGRASSLLSRFSREEFPTLQAAGDQDKAAKERESAEQSSGPGPSLRPQNSTTW 207

Query: 224 GSGGGPGTAAASSPSA 239
             GGG G      P +
Sbjct: 208 RDGGGRGPDELEGPDS 223



 Score = 30.8 bits (68), Expect = 2.1
 Identities = 33/131 (25%), Positives = 44/131 (33%), Gaps = 20/131 (15%)

Query: 57   GTFSPESAAGTEVSGAPHPDSRTRPAARPPHP------RTRSPPGRSGSGTTFSAVPPRP 110
            GT   +S +G ++SG     S   P ++   P          PP R G  +  +AVP   
Sbjct: 1643 GTEMSQSDSGVDLSGDSQVSSG--PCSQRSSPDGGLKGAAEGPPKRPGGSSPLNAVPCEG 1700

Query: 111  SQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQV 170
                   R  P AP         R  P P  P    R+   +    G+ PG         
Sbjct: 1701 PPGSEPPRRPPPAPHDGDRKELPREQPLPPGPIGTERS---QRTDRGTEPGP-------- 1749

Query: 171  GARPSRAGGQP 181
              RPS   G P
Sbjct: 1750 -IRPSHRPGPP 1759


>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 77/253 (30%), Positives = 94/253 (37%), Gaps = 53/253 (20%)

Query: 85  PPHPRTRSPPGRSGSGTTFSAVPPRP--SQHQSGSRLR----PAAPGPRPGCSSARASPA 138
           P +PR R P   S   +     PP P     + G+ LR    P AP P P    ARA P 
Sbjct: 18  PLYPRARGPAIASAGYSR----PPSPVGRARRRGTWLRVLRGPRAPSPAPALP-ARARPP 72

Query: 139 P-----AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAP 193
                 A P  AAR  P R A G +G      G ++   R  R   +PPP   RR R AP
Sbjct: 73  RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR---RPPPAP-RRPRPAP 128

Query: 194 RRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFG 253
            R  R       PL +R   G   R     G  GG G +   +     + DS   +  F 
Sbjct: 129 GR--RKSLYEAAPLLTREKGGRSGRR----GDRGGSGWSHGHTARVGGTGDSSAGLTTFP 182

Query: 254 GALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGVSSPTHPVVAPRRH 313
           G+ R  G  GR                   PRR  R+P         S+P  P      +
Sbjct: 183 GSSR-GGFSGREEE----------------PRRERRQPSLQR-----STPPAPT-----Y 215

Query: 314 FPRSVPRFPAGFR 326
            PRS PR PA  R
Sbjct: 216 SPRSDPRDPAAPR 228



 Score = 32.7 bits (73), Expect = 0.56
 Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 66  GTEVSGAPHPDSRTRPAARPPHPRTRSP-PGRSGSGTTFSAVPPRPSQHQSGSRLRPAAP 124
           G E +         RP   PP PR   P PGR  S    + +  R    +SG R      
Sbjct: 99  GVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRR------ 152

Query: 125 GPRPGCSSARASPAPAA----PQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
           G R G   +    A         A   T PG +  G SG   R +   +   +PS     
Sbjct: 153 GDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSG---REEEPRRERRQPSLQRST 209

Query: 181 PPPLTCRRCRAAPRRSARPFRRPGLP 206
           PP  T    R+ PR  A P   P  P
Sbjct: 210 PPAPTYSP-RSDPRDPAAPRAGPEAP 234


>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 77/253 (30%), Positives = 94/253 (37%), Gaps = 53/253 (20%)

Query: 85  PPHPRTRSPPGRSGSGTTFSAVPPRP--SQHQSGSRLR----PAAPGPRPGCSSARASPA 138
           P +PR R P   S   +     PP P     + G+ LR    P AP P P    ARA P 
Sbjct: 18  PLYPRARGPAIASAGYSR----PPSPVGRARRRGTWLRVLRGPRAPSPAPALP-ARARPP 72

Query: 139 P-----AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAP 193
                 A P  AAR  P R A G +G      G ++   R  R   +PPP   RR R AP
Sbjct: 73  RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR---RPPPAP-RRPRPAP 128

Query: 194 RRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFG 253
            R  R       PL +R   G   R     G  GG G +   +     + DS   +  F 
Sbjct: 129 GR--RKSLYEAAPLLTREKGGRSGRR----GDRGGSGWSHGHTARVGGTGDSSAGLTTFP 182

Query: 254 GALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGVSSPTHPVVAPRRH 313
           G+ R  G  GR                   PRR  R+P         S+P  P      +
Sbjct: 183 GSSR-GGFSGREEE----------------PRRERRQPSLQR-----STPPAPT-----Y 215

Query: 314 FPRSVPRFPAGFR 326
            PRS PR PA  R
Sbjct: 216 SPRSDPRDPAAPR 228



 Score = 32.7 bits (73), Expect = 0.56
 Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 66  GTEVSGAPHPDSRTRPAARPPHPRTRSP-PGRSGSGTTFSAVPPRPSQHQSGSRLRPAAP 124
           G E +         RP   PP PR   P PGR  S    + +  R    +SG R      
Sbjct: 99  GVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRR------ 152

Query: 125 GPRPGCSSARASPAPAA----PQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQ 180
           G R G   +    A         A   T PG +  G SG   R +   +   +PS     
Sbjct: 153 GDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSG---REEEPRRERRQPSLQRST 209

Query: 181 PPPLTCRRCRAAPRRSARPFRRPGLP 206
           PP  T    R+ PR  A P   P  P
Sbjct: 210 PPAPTYSP-RSDPRDPAAPRAGPEAP 234


>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
          Length = 261

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 66/209 (31%), Positives = 76/209 (36%), Gaps = 37/209 (17%)

Query: 61  PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPP--RPSQHQSGSR 118
           P    G    G   P +R  P  R P P    PPG  GS        P  RP +    +R
Sbjct: 31  PRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAAR 90

Query: 119 ---LRP---------------------AAPGPRPGCSSARASPAPAAPQAAARTAPGRAA 154
              LRP                      AP P PG SSA A    AAP  A    PG   
Sbjct: 91  CLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPG--G 148

Query: 155 SGG----SGPGS-RGQGSDQVGAR-PSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLK 208
           SGG     GPGS RG G+   G R P+ A G  P  T R        +A P    G P++
Sbjct: 149 SGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEG-PVQ 207

Query: 209 SRPGSGTGARSCGTWGSGGGPGTAAASSP 237
           S    GT A + G      G    A + P
Sbjct: 208 SH--HGTPALTQGPQSPRDGAQLGACTRP 234



 Score = 33.5 bits (75), Expect = 0.33
 Identities = 45/187 (24%), Positives = 52/187 (27%), Gaps = 55/187 (29%)

Query: 129 GCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCR- 187
           G  SA+A P      A+    P +        G R  G    GAR      +P PL  R 
Sbjct: 4   GMGSAQACPCQVPRAASTTWVPCQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLPARP 63

Query: 188 --------------------------RC-RAAPRRSARPFRRP-GLPL-----KSRPGSG 214
                                     RC    P R  R  RRP G PL     +  P   
Sbjct: 64  PGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPA 123

Query: 215 TGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQP 274
            G  S      G  PG A A  P                      G GGR    G G+  
Sbjct: 124 PGRSSALALAGGAAPGVARAQRPG---------------------GSGGRSHPGGPGSPR 162

Query: 275 GCRLLSP 281
           G   + P
Sbjct: 163 GGGTVGP 169


>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 72/247 (29%), Positives = 86/247 (34%), Gaps = 56/247 (22%)

Query: 63  SAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPA 122
           S  G   S  P P     PA   P P   +PP R  +    S   PR      GS     
Sbjct: 189 SFGGRPKSQPPLPQETAAPA---PQPGPTAPPARPPAYE--SREGPRGRAESRGSGPAQP 243

Query: 123 APGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP----GSRGQGSDQVGARP---S 175
           A  P PG +    SPAP AP+     APG  A     P     +   G   VG R     
Sbjct: 244 AHLPLPGPAH---SPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCD 300

Query: 176 RAGGQPPPLTC---RRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTA 232
           RAG   PP T     RCR   RR     RR G                   G G G GT 
Sbjct: 301 RAGSSQPPATSGNGERCRFCRRR-----RRRG-------------------GGGEGEGTH 336

Query: 233 AASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPL 292
           A   P++       + +          G    R  +G+G++ G +L    PP RR    L
Sbjct: 337 ATHGPASPPGRRHDEEV----------GAAVLRAGSGEGSRRGLQL---TPPPRRVHGAL 383

Query: 293 TLSFGGG 299
              FGGG
Sbjct: 384 Q-RFGGG 389


>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 72/247 (29%), Positives = 86/247 (34%), Gaps = 56/247 (22%)

Query: 63  SAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPA 122
           S  G   S  P P     PA   P P   +PP R  +    S   PR      GS     
Sbjct: 189 SFGGRPKSQPPLPQETAAPA---PQPGPTAPPARPPAYE--SREGPRGRAESRGSGPAQP 243

Query: 123 APGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP----GSRGQGSDQVGARP---S 175
           A  P PG +    SPAP AP+     APG  A     P     +   G   VG R     
Sbjct: 244 AHLPLPGPAH---SPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCD 300

Query: 176 RAGGQPPPLTC---RRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTA 232
           RAG   PP T     RCR   RR     RR G                   G G G GT 
Sbjct: 301 RAGSSQPPATSGNGERCRFCRRR-----RRRG-------------------GGGEGEGTH 336

Query: 233 AASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPL 292
           A   P++       + +          G    R  +G+G++ G +L    PP RR    L
Sbjct: 337 ATHGPASPPGRRHDEEV----------GAAVLRAGSGEGSRRGLQL---TPPPRRVHGAL 383

Query: 293 TLSFGGG 299
              FGGG
Sbjct: 384 Q-RFGGG 389


>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 72/247 (29%), Positives = 86/247 (34%), Gaps = 56/247 (22%)

Query: 63  SAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPA 122
           S  G   S  P P     PA   P P   +PP R  +    S   PR      GS     
Sbjct: 189 SFGGRPKSQPPLPQETAAPA---PQPGPTAPPARPPAYE--SREGPRGRAESRGSGPAQP 243

Query: 123 APGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP----GSRGQGSDQVGARP---S 175
           A  P PG +    SPAP AP+     APG  A     P     +   G   VG R     
Sbjct: 244 AHLPLPGPAH---SPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCD 300

Query: 176 RAGGQPPPLTC---RRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTA 232
           RAG   PP T     RCR   RR     RR G                   G G G GT 
Sbjct: 301 RAGSSQPPATSGNGERCRFCRRR-----RRRG-------------------GGGEGEGTH 336

Query: 233 AASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPL 292
           A   P++       + +          G    R  +G+G++ G +L    PP RR    L
Sbjct: 337 ATHGPASPPGRRHDEEV----------GAAVLRAGSGEGSRRGLQL---TPPPRRVHGAL 383

Query: 293 TLSFGGG 299
              FGGG
Sbjct: 384 Q-RFGGG 389


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 66/289 (22%), Positives = 97/289 (33%), Gaps = 39/289 (13%)

Query: 57  GTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSG 116
           G   P   A       P P     P    P P    P G   + T   +     S H + 
Sbjct: 156 GPAKPAGPAALAARAGPGPGPGPGPG---PGPGPGKPAGPGAAQTLNGSAALLNSHHAAA 212

Query: 117 SRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSR 176
               PA      G ++    P PAAP    +T P   A+    P +    +    A P+ 
Sbjct: 213 ----PAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAA 268

Query: 177 AGGQPPPLTCRRCRAAPRRSARPFRRPGL--PLKSRPGSGTGARSCGTWGSGG------- 227
           A   PPP      R     +  P   P +  P  ++ G   GA       +GG       
Sbjct: 269 APPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQ 328

Query: 228 -GPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPA-PPR 285
            GPG AAA++P+    ++SP+ ++                   Q   P  + L+ + P  
Sbjct: 329 PGPG-AAAAAPAPGVKAESPKRVV-------------------QAAPPAAQTLAASGPAS 368

Query: 286 RRYRKPLTLSFGGGVSSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAP 334
                 +  +  G + SP   V  P    P  +P+  AG  T SL   P
Sbjct: 369 TAASMVIGPTMQGALPSPA-AVPPPAPGTPTGLPKGAAGAVTQSLSRTP 416



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 58/197 (29%), Positives = 65/197 (32%), Gaps = 19/197 (9%)

Query: 60  SPESAAGT----EVSGAPH------PDSRTRPAA----RPPHPRTRSPPGRSGSGTTFSA 105
           SP  AAG        GAP       P  R RP      RP  P  R P   +G     + 
Sbjct: 66  SPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAK 125

Query: 106 VPPRPSQHQSGSRLRPAAPGPRPGCSSARASPA-PAAPQA-AARTAPGRAASGGSGPG-S 162
           + P P          PAA     G   A A PA PA P A AAR  PG     G GPG  
Sbjct: 126 LRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGP--GPGPGPG 183

Query: 163 RGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGT 222
            G G            G    L      A             LPL      GT  ++   
Sbjct: 184 PGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPF 243

Query: 223 WGSGGGPGTAAASSPSA 239
            G+   P  AA S P+A
Sbjct: 244 VGAAAPPAPAAPSPPAA 260



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 39/118 (33%), Positives = 46/118 (38%), Gaps = 18/118 (15%)

Query: 131 SSARASPAPAAPQAAARTAP---------GRAASGGSGPGSRGQGSDQ-----VGARPSR 176
           S + A  A A P A A  AP         GRA  GG GP   G  S +      G  P  
Sbjct: 64  SGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPA 123

Query: 177 AGGQPPPL----TCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPG 230
           A  +PPP     +C    AA   +A P   P  P K    +   AR+    G G GPG
Sbjct: 124 AKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPG 181



 Score = 33.1 bits (74), Expect = 0.43
 Identities = 41/149 (27%), Positives = 49/149 (32%), Gaps = 18/149 (12%)

Query: 138 APAAPQ--AAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPL-TCRRCRAAPR 194
           AP  P+  AAA  A G     GS  G+ G G          A  +PPP    R     P+
Sbjct: 44  APRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQ 103

Query: 195 RSARPF-RRPGLP-------LKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSP 246
           R   P  RRP +P        K RP     A SC    +          +P+       P
Sbjct: 104 RPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGP 163

Query: 247 QPIIIFGGALRVRGCGGRRRSNGQGTQPG 275
                   AL  R   G     G G  PG
Sbjct: 164 -------AALAARAGPGPGPGPGPGPGPG 185



 Score = 30.0 bits (66), Expect = 3.7
 Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 10/113 (8%)

Query: 225 SGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVR-GCGGRRRSNGQGTQPGCRLLSPAP 283
           +G GP   A  +P A     +P+P      A R R G GG +R      +       PAP
Sbjct: 71  AGAGPAAPAEGAPGA-----APEP----PPAGRARPGGGGPQRPGPPSPRRPLVPAGPAP 121

Query: 284 PRRRYRKPLTLSFGGGVSSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKP 336
           P  + R P   S G     P    VA       + P  PAG    +    P P
Sbjct: 122 PAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGP 174


>gi|169172231 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 71/225 (31%), Positives = 86/225 (38%), Gaps = 28/225 (12%)

Query: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPG-SRGQGSDQVGARPSRAGG 179
           P+APG   G  +A A+ +  A Q  + T    +       G S G+GS        R   
Sbjct: 14  PSAPG---GGGAALAALSARAAQRGSTTFVAASLHRALTLGASSGEGS-------GRDNN 63

Query: 180 QPPPLTCRRCRAAPRRSARPFRR--PGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSP 237
            PPP   RR R  P  +A   RR   GL L + PG G  A  CG  G   G G A A+  
Sbjct: 64  TPPPPPPRRRRRPPVVAATHRRRLGSGLGLTTTPGLGPRAL-CGPRGWAAGRGEAGATGL 122

Query: 238 SADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFG 297
                + + +     GG  R  G  G   S   GT P   LLSP PP       L LS  
Sbjct: 123 RLSVGAATVRGWA--GGYFRGDGGRGVSESVAVGTGPDFLLLSPPPPPPAEVAELPLS-- 178

Query: 298 GGVSSPTHPVVAPRRHFPRSVPRFPAGF---RTHSLGTAPKPKCW 339
              + P H      R  PR  P  P+     R  S GT     CW
Sbjct: 179 --SAPPLHEEAPGVRGLPRLAPPLPSPLLVRRRESNGT-----CW 216


>gi|169170975 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 71/225 (31%), Positives = 86/225 (38%), Gaps = 28/225 (12%)

Query: 121 PAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPG-SRGQGSDQVGARPSRAGG 179
           P+APG   G  +A A+ +  A Q  + T    +       G S G+GS        R   
Sbjct: 14  PSAPG---GGGAALAALSARAAQRGSTTFVAASLHRALTLGASSGEGS-------GRDNN 63

Query: 180 QPPPLTCRRCRAAPRRSARPFRR--PGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSP 237
            PPP   RR R  P  +A   RR   GL L + PG G  A  CG  G   G G A A+  
Sbjct: 64  TPPPPPPRRRRRPPVVAATHRRRLGSGLGLTTTPGLGPRAL-CGPRGWAAGRGEAGATGL 122

Query: 238 SADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFG 297
                + + +     GG  R  G  G   S   GT P   LLSP PP       L LS  
Sbjct: 123 RLSVGAATVRGWA--GGYFRGDGGRGVSESVAVGTGPDFLLLSPPPPPPAEVAELPLS-- 178

Query: 298 GGVSSPTHPVVAPRRHFPRSVPRFPAGF---RTHSLGTAPKPKCW 339
              + P H      R  PR  P  P+     R  S GT     CW
Sbjct: 179 --SAPPLHEEAPGVRGLPRLAPPLPSPLLVRRRESNGT-----CW 216


>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
          Length = 2161

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 93/367 (25%), Positives = 119/367 (32%), Gaps = 82/367 (22%)

Query: 67   TEVSGAPHPDSRTRPAARPPHPRTRSPP---------------------------GRSGS 99
            T+V G P       PA  P  P +  PP                           GRS  
Sbjct: 1114 TKVEGEPQKGGGLPPAPSPTSPASPQPPPAVAAPSEKNSIPIPTIIIKAPSTSSSGRSSQ 1173

Query: 100  GTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPA----PAAPQ-----------A 144
            G++  A PP   +   G     ++P P P  S    SP+    PA+P             
Sbjct: 1174 GSSTEAEPPTQPEPTGGGGGGGSSPSPAPAMSPVPPSPSPVPTPASPSGPATLDFTSQFG 1233

Query: 145  AARTAPGRAASGGSGPGSR-------GQGSDQVGARPSRAGGQPPPLTCRRCRAAPRR-- 195
            AA     R   G      R           D+ G       G  P    R  ++      
Sbjct: 1234 AALVGAARREGGWQNEARRRSTLFLSTDAGDEDGGDGGLGTGAAPGPRLRHSKSIDEGMF 1293

Query: 196  SARPFRRPGLPLKSR-PGSGTGARSCGTWGSGGGPGTAAASS---------PSADFSSDS 245
            SA P+ R    L+S   G+G G    G+   GGG G++A +S         P    + D 
Sbjct: 1294 SAEPYLR----LESAGSGAGYGGYGAGSRAYGGGGGSSAFTSFLPPRPLVHPLTGKALDP 1349

Query: 246  PQPIIIFGGALRVRGCGGRRRSNGQGT-QPGCRLLSPAPPRRRYRKPLTLSFGGGVSSPT 304
              P+   G AL  R    +  S G G  QP      P PP  RY  P          +  
Sbjct: 1350 ASPL---GLALAARERALKESSEGGGAPQP-----PPRPPSPRYEAPPPTPHHHSPHAHH 1401

Query: 305  HPVVAPRRHFPRSVPRFPAGFRTHSLGTAPKPKCWKHSQPWHRPQAEVFLSWGRLKPYGS 364
             PV+      P    R   G+R   LG+  K      S P   P A   L   RL P   
Sbjct: 1402 EPVLRLWGASPPDPARRELGYRA-GLGSQEK------SLPASPPAARRSL-LHRLPPTAP 1453

Query: 365  SSGPLLL 371
              GPLLL
Sbjct: 1454 GVGPLLL 1460



 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 51/197 (25%), Positives = 70/197 (35%), Gaps = 30/197 (15%)

Query: 83   ARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQ---SGSRLRPAAPGPRPGCSSARASPAP 139
            A PPHP      G         A+ P+PS       G    P AP P    S+     + 
Sbjct: 1018 AHPPHPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSPTPGAPSPSHHGSAGGGGGSS 1077

Query: 140  AAPQAAARTAPGRAASGG------SGPGSRGQ--GSDQVGARPSRAGGQP--PPLTCRRC 189
              P       P RAAS        SG G +G      +V   P + GG P  P  T    
Sbjct: 1078 QGPALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLPPAPSPTSPAS 1137

Query: 190  RAAPRRSARPFRRPGLP-----LKSRPGSGTGARSCGT------------WGSGGGPGTA 232
               P   A P  +  +P     +K+   S +G  S G+             G GGG G++
Sbjct: 1138 PQPPPAVAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPEPTGGGGGGGSS 1197

Query: 233  AASSPSADFSSDSPQPI 249
             + +P+      SP P+
Sbjct: 1198 PSPAPAMSPVPPSPSPV 1214



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 16/119 (13%)

Query: 63  SAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPA 122
           SA G   SGAP P S ++  ++P  P T     +  SGT  SA  PR      G+R R  
Sbjct: 452 SAPGAASSGAPGPTSGSQGQSQPSAPTT-----KLSSGTLRSASSPR------GARARSP 500

Query: 123 APGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP----GSRGQGSDQVGARPSRA 177
           + G  P  +  +    P++     R  P     G  GP    GSRG+      A P R+
Sbjct: 501 SRGRHPEDAKRQPRGRPSS-SGTPREGPAGGTGGSGGPGGSLGSRGRRRKLYSAVPGRS 558



 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 42/137 (30%), Positives = 55/137 (40%), Gaps = 8/137 (5%)

Query: 106 VPPRPSQHQSGSRLRPAAPGPR--PGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSR 163
           VP + S   +  R  P   G    P    A +  + A P     +APG A+SG  GP S 
Sbjct: 408 VPFQESPKYAARRRGPPGTGLTVPPALLRANSDTSMALPDWMVFSAPGAASSGAPGPTSG 467

Query: 164 GQGSDQVGARPSR--AGGQPPPLTCRRCRA-APRRSARPFRRPGLPLKSRPGSGTGARS- 219
            QG  Q  A  ++  +G      + R  RA +P R   P      P + RP S    R  
Sbjct: 468 SQGQSQPSAPTTKLSSGTLRSASSPRGARARSPSRGRHPEDAKRQP-RGRPSSSGTPREG 526

Query: 220 -CGTWGSGGGPGTAAAS 235
             G  G  GGPG +  S
Sbjct: 527 PAGGTGGSGGPGGSLGS 543



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 57/222 (25%), Positives = 69/222 (31%), Gaps = 56/222 (25%)

Query: 69   VSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTT-----------------------FSA 105
            V+    P S   P   PP PR   PP  +    +                       F  
Sbjct: 1504 VTSGRGPPSEDGPGVPPPSPRRSVPPSPTSPRASEENGLPLLVLPPPAPSVDVEDGEFLF 1563

Query: 106  VPPRP-------SQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGS 158
            V P P       S  +  S L P  P P P  + A A+P P  P  A   AP    S  S
Sbjct: 1564 VEPLPPPLEFSNSFEKPESPLTPGPPHPLPD-TPAPATPLPPVPPPAVAAAPPTLDSTAS 1622

Query: 159  GPGSRGQGSDQVGARPSRAGGQP----PPLTCRRCRAAPRRSARPFRRPGL--------- 205
               S       +    S A G P    PP       AAP+    P   PG          
Sbjct: 1623 SLTSYDSEVATLTQGASAAPGDPHPPGPPAPAAPAPAAPQPGPDP--PPGTDSGIEEVDS 1680

Query: 206  ------PLKSRPGSGT----GARSCGTWGSGGGPGTAAASSP 237
                  PL++   + T     A   G+ G GGG G   AS P
Sbjct: 1681 RSSSDHPLETISSASTLSSLSAEGGGSAGGGGGAGAGVASGP 1722



 Score = 39.7 bits (91), Expect = 0.005
 Identities = 41/145 (28%), Positives = 51/145 (35%), Gaps = 22/145 (15%)

Query: 83   ARPPHPRTRSPPGRSGSGTTFSAVPPRP--SQHQSGSRLRPAAPG--------------P 126
            A PP P  R    R+G G+   ++P  P  ++     RL P APG              P
Sbjct: 1410 ASPPDPARRELGYRAGLGSQEKSLPASPPAARRSLLHRLPPTAPGVGPLLLQLGTEPPAP 1469

Query: 127  RPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTC 186
             PG S    S AP  P+                P + G+G       PS  G   PP + 
Sbjct: 1470 HPGVSKPWRSAAPEEPERLPLHVRFLENCQPRAPVTSGRGP------PSEDGPGVPPPSP 1523

Query: 187  RRCRAAPRRSARPFRRPGLPLKSRP 211
            RR       S R     GLPL   P
Sbjct: 1524 RRSVPPSPTSPRASEENGLPLLVLP 1548



 Score = 32.0 bits (71), Expect = 0.96
 Identities = 55/226 (24%), Positives = 70/226 (30%), Gaps = 31/226 (13%)

Query: 81   PAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAP----GPRP---GCSSA 133
            P   PP P   +PP  S SG    +    P    SG  L  ++P    GP P      S 
Sbjct: 924  PTTSPPEPPYSTPPVPSSSGRLTPSPRGGPFNPGSGGPLPASSPASFDGPSPPDTRVGSR 983

Query: 134  RASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAP 193
              S   + P   A   P       + P             P    G  P     R    P
Sbjct: 984  EKSLYHSGPLPPAHHHPPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPPPRLALGP 1043

Query: 194  RRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFG 253
            + S R +R  G      P    GA S    GS GG G  ++  P+  +    P+      
Sbjct: 1044 QPSLRGWRGGG------PSPTPGAPSPSHHGSAGG-GGGSSQGPALRYFQLPPRAA---S 1093

Query: 254  GALRVRGCGGRRR--------------SNGQGTQPGCRLLSPAPPR 285
             A+ V    GR R                G G  P     SPA P+
Sbjct: 1094 AAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLPPAPSPTSPASPQ 1139



 Score = 30.8 bits (68), Expect = 2.1
 Identities = 55/213 (25%), Positives = 64/213 (30%), Gaps = 56/213 (26%)

Query: 71   GAPHPDSRTRPAA---RPPHPRTRSPPG----------RSGSGTTFSAVPPRPSQHQSGS 117
            G PHP     PAA     P P    PPG          RS S      +    S   + S
Sbjct: 1643 GDPHPPGPPAPAAPAPAAPQPGPDPPPGTDSGIEEVDSRSSSDHPLETI----SSASTLS 1698

Query: 118  RLRPAAPGPRPGCSSARASPA--PAAPQAAARTAPGRAASGGSGPGS------------R 163
             L     G   G   A A  A  P           G+A  G S PG             R
Sbjct: 1699 SLSAEGGGSAGGGGGAGAGVASGPELLDTYVAYLDGQAFGGSSTPGPPYPPQLMTPSKLR 1758

Query: 164  GQG-SDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGT----GAR 218
            G+      G RP  +GG   P+T                 P  P  S  G+GT      R
Sbjct: 1759 GRALGASGGLRPGPSGGLRDPVT-----------------PTSPTVSVTGAGTDGLLALR 1801

Query: 219  SCG---TWGSGGGPGTAAASSPSADFSSDSPQP 248
            +C    T G  GGP       P     + S  P
Sbjct: 1802 ACSGPPTAGVAGGPVAVEPEVPPVPLPTASSLP 1834


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 67/254 (26%), Positives = 80/254 (31%), Gaps = 50/254 (19%)

Query: 70  SGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPR-- 127
           +GA  P+    P   P  P +  P G SG+  T      + S    G    P  PGPR  
Sbjct: 380 TGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGP 439

Query: 128 PGCSSA------------------------RASPAPAAPQAA-----------ARTAPGR 152
           PG   A                        +  P PA PQ A           AR  PG 
Sbjct: 440 PGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGG 499

Query: 153 AASGG-----SGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLP- 206
               G       PG+RG       A P  A G+  P      + A     RP   PGLP 
Sbjct: 500 VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP-GEPGLPG 558

Query: 207 ---LKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGG 263
              L  RPG    A   G  G  G PG      P     +     ++ F G     G  G
Sbjct: 559 ARGLTGRPGD---AGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPG 615

Query: 264 RRRSNGQGTQPGCR 277
           +    G    PG R
Sbjct: 616 KAGEKGLPGAPGLR 629



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 62/224 (27%), Positives = 73/224 (32%), Gaps = 35/224 (15%)

Query: 71  GAPHPDSRTRPAARPPHPRTRSPPGRSGS---GTTFSAVPPRPSQHQSGSRLRPAAPGPR 127
           GAP P  R      P +P    PPG  G    G  F+A        ++G        GP 
Sbjct: 144 GAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPM 203

Query: 128 PGCSSARASPAPA---APQAAARTAPGRAASGGSGP-GSRG-------QGSDQVGARPSR 176
            G    R  P PA    PQ            G SGP G RG        G D    +P +
Sbjct: 204 -GPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK 262

Query: 177 AGGQPPPLTCRRCRAAPRRSARPF-RRPGLP----LKSRPGSGTGARSCGTWGSGGGPGT 231
           AG + PP           + AR F   PGLP     +  PG        G  G  G PG 
Sbjct: 263 AGERGPP---------GPQGARGFPGTPGLPGVKGHRGYPGLD------GAKGEAGAPGV 307

Query: 232 AAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPG 275
              S    +  S  P       G     G  G   + G   QPG
Sbjct: 308 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPG 351



 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 56/226 (24%), Positives = 66/226 (29%), Gaps = 25/226 (11%)

Query: 71  GAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGC 130
           G+P       P   P  P T  P G SG      A  P   Q   G R      GP+   
Sbjct: 708 GSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPK--- 764

Query: 131 SSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCR 190
              R       P+ A     GR  +G  GP      + + G       G P P      R
Sbjct: 765 -GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKG-----EVGPPGPAGSAGAR 818

Query: 191 AAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQ-PI 249
            AP                 PG+     + G  G  G  G A A  P     +  PQ P 
Sbjct: 819 GAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPT 878

Query: 250 IIFG-----------GALRVRGCGGRRRSNGQGTQPGCRLLSPAPP 284
            + G           GA    G  GR    G    PG     P PP
Sbjct: 879 GVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPG----PPGPP 920



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 61/255 (23%), Positives = 82/255 (32%), Gaps = 40/255 (15%)

Query: 57   GTFSPESAAGTE----VSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQ 112
            G   P+ A G +     +G P    R  P     +P    PPG SG         P+ ++
Sbjct: 879  GVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDG------PKGAR 932

Query: 113  HQSGSRLRPAAPGPR-----------PGCSSARASPAPAAPQAAARTA-----PGRAASG 156
              SG   R   PG +           PG      +  P  PQ  A        PG+    
Sbjct: 933  GDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGER 992

Query: 157  GSG--PGSRGQGSDQVGARPSRAGGQPPPLTCRRC---------RAAPRRSARPFRRPGL 205
            G    PG  G+   Q     S   G P P+                +P     P R    
Sbjct: 993  GFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAA 1052

Query: 206  PLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQ-PIIIFG--GALRVRGCG 262
             +K   G      + G  G  G PG A  +    D      Q P+   G  GA  ++G  
Sbjct: 1053 GVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQ 1112

Query: 263  GRRRSNGQGTQPGCR 277
            G R   G+  +PG R
Sbjct: 1113 GPRGDKGEAGEPGER 1127



 Score = 37.7 bits (86), Expect = 0.018
 Identities = 75/285 (26%), Positives = 90/285 (31%), Gaps = 68/285 (23%)

Query: 55   ERGTFSPESAAGTE-VSGAPHPDSRTRPA-----ARPP----HPRTRSPPGRSGSGTTFS 104
            E+G   P   AG+    GAP     T P      A PP     P  +   G +G      
Sbjct: 802  EKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAG 861

Query: 105  AVPPRPSQHQSGSRLRPAAPGPRPGCSSARASP-APAAPQAAARTAP------------- 150
            A  P+      G +      GP+ G   A+  P A   P AA R  P             
Sbjct: 862  APGPQGPSGAPGPQGPTGVTGPK-GARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 920

Query: 151  -------GRAASGGSGP-------------GSRGQGSDQVGARPSRAGGQPPPLTCRRCR 190
                    + A G SGP             G  G+  +     PS A G P P      R
Sbjct: 921  GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 980

Query: 191  A----APRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPG-------TAAASSPSA 239
                   +R  R F  PGLP  S      GA   G  G  G PG       T  A  P  
Sbjct: 981  GIVGLPGQRGERGF--PGLPGPSGEPGKQGAP--GASGDRGPPGPVGPPGLTGPAGEPGR 1036

Query: 240  DFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPP 284
            + S  +  P    G A    G  G R   G    PG    +P PP
Sbjct: 1037 EGSPGADGPPGRDGAA----GVKGDRGETGAVGAPG----APGPP 1073



 Score = 32.3 bits (72), Expect = 0.74
 Identities = 57/242 (23%), Positives = 71/242 (29%), Gaps = 36/242 (14%)

Query: 55  ERGTFSPESAAGTEVS----------GAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFS 104
           ERG   P+ A G   +          G P  D     A  P        PG +GS     
Sbjct: 265 ERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMG 324

Query: 105 A---------VPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAAS 155
                       P  +    G+  +P   GP      A     P AP A     P  A  
Sbjct: 325 PRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARG 384

Query: 156 GGSGPGSRGQGSDQVGARPSRAGGQPPP---LTCRRCRAAPRRSARPFRRPGLPLKSRPG 212
                G RG+        P+ A G P        +    AP  +      PG P    P 
Sbjct: 385 PEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAG----APGFPGPRGPP 440

Query: 213 SGTGARS-CGTWGSGGGPGTA---AASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSN 268
              GA    G  G  G PG A       P  +     PQ      GA    G  G+R + 
Sbjct: 441 GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ------GAPGPAGEEGKRGAR 494

Query: 269 GQ 270
           G+
Sbjct: 495 GE 496



 Score = 28.9 bits (63), Expect = 8.1
 Identities = 35/127 (27%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 55   ERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPR-TRSPPGRSG-SGTTFSAVPPRPSQ 112
            ERG        G +    P   S  + A+ P  P   R PPG  G SG   +   P P  
Sbjct: 1126 ERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIG 1185

Query: 113  HQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA 172
               G R R    GP    +    +P P  P          +A  G GP  +G    Q   
Sbjct: 1186 -PPGPRGRSGETGP----AGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMR 1240

Query: 173  RPSRAGG 179
                AGG
Sbjct: 1241 ADQAAGG 1247


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 67/254 (26%), Positives = 80/254 (31%), Gaps = 50/254 (19%)

Query: 70  SGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPR-- 127
           +GA  P+    P   P  P +  P G SG+  T      + S    G    P  PGPR  
Sbjct: 311 TGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGP 370

Query: 128 PGCSSA------------------------RASPAPAAPQAA-----------ARTAPGR 152
           PG   A                        +  P PA PQ A           AR  PG 
Sbjct: 371 PGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGG 430

Query: 153 AASGG-----SGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLP- 206
               G       PG+RG       A P  A G+  P      + A     RP   PGLP 
Sbjct: 431 VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP-GEPGLPG 489

Query: 207 ---LKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGG 263
              L  RPG    A   G  G  G PG      P     +     ++ F G     G  G
Sbjct: 490 ARGLTGRPGD---AGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPG 546

Query: 264 RRRSNGQGTQPGCR 277
           +    G    PG R
Sbjct: 547 KAGEKGLPGAPGLR 560



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 62/224 (27%), Positives = 73/224 (32%), Gaps = 35/224 (15%)

Query: 71  GAPHPDSRTRPAARPPHPRTRSPPGRSGS---GTTFSAVPPRPSQHQSGSRLRPAAPGPR 127
           GAP P  R      P +P    PPG  G    G  F+A        ++G        GP 
Sbjct: 75  GAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPM 134

Query: 128 PGCSSARASPAPA---APQAAARTAPGRAASGGSGP-GSRG-------QGSDQVGARPSR 176
            G    R  P PA    PQ            G SGP G RG        G D    +P +
Sbjct: 135 -GPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK 193

Query: 177 AGGQPPPLTCRRCRAAPRRSARPF-RRPGLP----LKSRPGSGTGARSCGTWGSGGGPGT 231
           AG + PP           + AR F   PGLP     +  PG        G  G  G PG 
Sbjct: 194 AGERGPP---------GPQGARGFPGTPGLPGVKGHRGYPGLD------GAKGEAGAPGV 238

Query: 232 AAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPG 275
              S    +  S  P       G     G  G   + G   QPG
Sbjct: 239 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPG 282



 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 56/226 (24%), Positives = 66/226 (29%), Gaps = 25/226 (11%)

Query: 71  GAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGC 130
           G+P       P   P  P T  P G SG      A  P   Q   G R      GP+   
Sbjct: 639 GSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPK--- 695

Query: 131 SSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCR 190
              R       P+ A     GR  +G  GP      + + G       G P P      R
Sbjct: 696 -GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKG-----EVGPPGPAGSAGAR 749

Query: 191 AAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQ-PI 249
            AP                 PG+     + G  G  G  G A A  P     +  PQ P 
Sbjct: 750 GAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPT 809

Query: 250 IIFG-----------GALRVRGCGGRRRSNGQGTQPGCRLLSPAPP 284
            + G           GA    G  GR    G    PG     P PP
Sbjct: 810 GVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPG----PPGPP 851



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 61/255 (23%), Positives = 82/255 (32%), Gaps = 40/255 (15%)

Query: 57   GTFSPESAAGTE----VSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQ 112
            G   P+ A G +     +G P    R  P     +P    PPG SG         P+ ++
Sbjct: 810  GVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDG------PKGAR 863

Query: 113  HQSGSRLRPAAPGPR-----------PGCSSARASPAPAAPQAAARTA-----PGRAASG 156
              SG   R   PG +           PG      +  P  PQ  A        PG+    
Sbjct: 864  GDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGER 923

Query: 157  GSG--PGSRGQGSDQVGARPSRAGGQPPPLTCRRC---------RAAPRRSARPFRRPGL 205
            G    PG  G+   Q     S   G P P+                +P     P R    
Sbjct: 924  GFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAA 983

Query: 206  PLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQ-PIIIFG--GALRVRGCG 262
             +K   G      + G  G  G PG A  +    D      Q P+   G  GA  ++G  
Sbjct: 984  GVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQ 1043

Query: 263  GRRRSNGQGTQPGCR 277
            G R   G+  +PG R
Sbjct: 1044 GPRGDKGEAGEPGER 1058



 Score = 37.7 bits (86), Expect = 0.018
 Identities = 75/285 (26%), Positives = 90/285 (31%), Gaps = 68/285 (23%)

Query: 55   ERGTFSPESAAGTE-VSGAPHPDSRTRPA-----ARPP----HPRTRSPPGRSGSGTTFS 104
            E+G   P   AG+    GAP     T P      A PP     P  +   G +G      
Sbjct: 733  EKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAG 792

Query: 105  AVPPRPSQHQSGSRLRPAAPGPRPGCSSARASP-APAAPQAAARTAP------------- 150
            A  P+      G +      GP+ G   A+  P A   P AA R  P             
Sbjct: 793  APGPQGPSGAPGPQGPTGVTGPK-GARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 851

Query: 151  -------GRAASGGSGP-------------GSRGQGSDQVGARPSRAGGQPPPLTCRRCR 190
                    + A G SGP             G  G+  +     PS A G P P      R
Sbjct: 852  GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 911

Query: 191  A----APRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPG-------TAAASSPSA 239
                   +R  R F  PGLP  S      GA   G  G  G PG       T  A  P  
Sbjct: 912  GIVGLPGQRGERGF--PGLPGPSGEPGKQGAP--GASGDRGPPGPVGPPGLTGPAGEPGR 967

Query: 240  DFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPP 284
            + S  +  P    G A    G  G R   G    PG    +P PP
Sbjct: 968  EGSPGADGPPGRDGAA----GVKGDRGETGAVGAPG----APGPP 1004



 Score = 32.3 bits (72), Expect = 0.74
 Identities = 57/242 (23%), Positives = 71/242 (29%), Gaps = 36/242 (14%)

Query: 55  ERGTFSPESAAGTEVS----------GAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFS 104
           ERG   P+ A G   +          G P  D     A  P        PG +GS     
Sbjct: 196 ERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMG 255

Query: 105 A---------VPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAAS 155
                       P  +    G+  +P   GP      A     P AP A     P  A  
Sbjct: 256 PRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARG 315

Query: 156 GGSGPGSRGQGSDQVGARPSRAGGQPPP---LTCRRCRAAPRRSARPFRRPGLPLKSRPG 212
                G RG+        P+ A G P        +    AP  +      PG P    P 
Sbjct: 316 PEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAG----APGFPGPRGPP 371

Query: 213 SGTGARS-CGTWGSGGGPGTA---AASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSN 268
              GA    G  G  G PG A       P  +     PQ      GA    G  G+R + 
Sbjct: 372 GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ------GAPGPAGEEGKRGAR 425

Query: 269 GQ 270
           G+
Sbjct: 426 GE 427



 Score = 28.9 bits (63), Expect = 8.1
 Identities = 35/127 (27%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 55   ERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPR-TRSPPGRSG-SGTTFSAVPPRPSQ 112
            ERG        G +    P   S  + A+ P  P   R PPG  G SG   +   P P  
Sbjct: 1057 ERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIG 1116

Query: 113  HQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA 172
               G R R    GP    +    +P P  P          +A  G GP  +G    Q   
Sbjct: 1117 -PPGPRGRSGETGP----AGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMR 1171

Query: 173  RPSRAGG 179
                AGG
Sbjct: 1172 ADQAAGG 1178


>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
           sapiens]
          Length = 258

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 51/179 (28%), Positives = 63/179 (35%), Gaps = 24/179 (13%)

Query: 54  LERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQH 113
           L   +FS  S++   +S A  P+     AA    P+  S    S  G       P P + 
Sbjct: 47  LSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRA 106

Query: 114 QSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPG----------RAASGGSGPGSR 163
            S   + P  P P P   S    PAP+A   +    P            A   G   G  
Sbjct: 107 ASPGSMVPGPPAPPP---SGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRA 163

Query: 164 GQGSDQVGARPSRAGGQPPPLTCRR-CRAAPRRSARPFRRPGLPLKSRPGSGTGARSCG 221
           G+G  Q    PS A   P P TC    RA P R A     PG       G+G   R CG
Sbjct: 164 GEGRAQCAGSPSTA---PRPRTCSSPGRATPHRPAGQPSHPG-------GAGCCPRVCG 212


>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
           sapiens]
          Length = 258

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 51/179 (28%), Positives = 63/179 (35%), Gaps = 24/179 (13%)

Query: 54  LERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQH 113
           L   +FS  S++   +S A  P+     AA    P+  S    S  G       P P + 
Sbjct: 47  LSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRA 106

Query: 114 QSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPG----------RAASGGSGPGSR 163
            S   + P  P P P   S    PAP+A   +    P            A   G   G  
Sbjct: 107 ASPGSMVPGPPAPPP---SGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRA 163

Query: 164 GQGSDQVGARPSRAGGQPPPLTCRR-CRAAPRRSARPFRRPGLPLKSRPGSGTGARSCG 221
           G+G  Q    PS A   P P TC    RA P R A     PG       G+G   R CG
Sbjct: 164 GEGRAQCAGSPSTA---PRPRTCSSPGRATPHRPAGQPSHPG-------GAGCCPRVCG 212


>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 76/253 (30%), Positives = 93/253 (36%), Gaps = 53/253 (20%)

Query: 85  PPHPRTRSPPGRSGSGTTFSAVPPRP--SQHQSGSRLR----PAAPGPRPGCSSARASPA 138
           P +PR R P   S   +     PP P     + G+ LR    P AP P P    ARA P 
Sbjct: 18  PLYPRARGPAIASAGYSR----PPSPVGRARRRGTWLRVLRGPRAPSPAPALP-ARARPP 72

Query: 139 P-----AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAP 193
                 A P  AAR  P R A G +G      G ++   R  R   +PPP   RR R AP
Sbjct: 73  RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR---RPPPAP-RRPRPAP 128

Query: 194 RRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFG 253
            R  R       PL +R   G   R     G  G  G +   +     + DS   +  F 
Sbjct: 129 GR--RKSLYEAAPLLTREKGGRSGRR----GDRGDSGWSHGHTARVGGTGDSSAGLTTFP 182

Query: 254 GALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGVSSPTHPVVAPRRH 313
           G+ R  G  GR                   PRR  R+P         S+P  P      +
Sbjct: 183 GSSR-GGFSGREEE----------------PRRERRQPSLQR-----STPPAPT-----Y 215

Query: 314 FPRSVPRFPAGFR 326
            PRS PR PA  R
Sbjct: 216 SPRSDPRDPAAPR 228



 Score = 32.0 bits (71), Expect = 0.96
 Identities = 39/142 (27%), Positives = 52/142 (36%), Gaps = 7/142 (4%)

Query: 66  GTEVSGAPHPDSRTRPAARPPHPRTRSP-PGRSGSGTTFSAVPPRPSQHQSGSRLRPAAP 124
           G E +         RP   PP PR   P PGR  S    + +  R    +SG R      
Sbjct: 99  GVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDS 158

Query: 125 GPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPL 184
           G   G ++       ++  A   T PG +  G SG   R +   +   +PS     PP  
Sbjct: 159 GWSHGHTARVGGTGDSS--AGLTTFPGSSRGGFSG---REEEPRRERRQPSLQRSTPPAP 213

Query: 185 TCRRCRAAPRRSARPFRRPGLP 206
           T    R+ PR  A P   P  P
Sbjct: 214 TYSP-RSDPRDPAAPRAGPEAP 234


>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 466

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 94/308 (30%), Positives = 109/308 (35%), Gaps = 70/308 (22%)

Query: 93  PPGRSGSGTTF------SAVPPRPSQHQSGSRLRPAAPGPR------PGCSSARASPAPA 140
           P   SGS TT        A    PS+ +  SR R A  G R      PG   A ++PAP+
Sbjct: 69  PTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPS 128

Query: 141 APQAAARTAPGRA---------ASGGSGPGSRG--QGSDQVGARPSRAGGQ---PPPLTC 186
             Q+    AP  A         ASGG G  S    +     G R SRAG +   P  L  
Sbjct: 129 GAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARRKTPLSLCP 188

Query: 187 RRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAA----SSPSADFS 242
            + R    R     R  GL   S  GSGT       W   GG   A A    S   A   
Sbjct: 189 LKLRKGSSR-----RCQGLG-SSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPG 242

Query: 243 SDSPQPIIIFG-GALRVRGCGG---RRRSNGQGTQPGCRLLSPAPPRRRYRK-------- 290
           S  P   ++ G    R RG GG   +R S       G R L P P R R  K        
Sbjct: 243 STLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTL-PTPSRARPGKPAPRGSAP 301

Query: 291 PLTLSFGGGVSSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGT----------APKPKCWK 340
           P  L  GGG S  T  V + R               THS+GT          AP+P    
Sbjct: 302 PARLRGGGGGSGLTQLVGSGR-----------GSGVTHSVGTHALATRRGSRAPRPVGVL 350

Query: 341 HSQPWHRP 348
              P  RP
Sbjct: 351 RGVPHFRP 358



 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 68/239 (28%), Positives = 81/239 (33%), Gaps = 46/239 (19%)

Query: 7   GPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSR-KSRLERGTFSPESAA 65
           G  G+     G   RAC G  +    S+    C       TR+R    ++R  FS  S+ 
Sbjct: 224 GAAGARAQVRGSEKRACPG--STLPPSSVLAGCVG-----TRARGHGGVQRQRFSAPSSH 276

Query: 66  GTEVSGAPHPDSRTRPAARPPHPRTRSPPGR-----SGSGTTF-------SAVPPRPSQH 113
            T     P P SR RP    P PR  +PP R      GSG T        S V      H
Sbjct: 277 STGARTLPTP-SRARPGK--PAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTH 333

Query: 114 QSGSRLRPAAPGP----------RPGCSSARASPAPAAPQAAA------------RTAPG 151
              +R    AP P          RP  S A  SP P +P   A              AP 
Sbjct: 334 ALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSP-PRSPSVRAFGPRLGAGRLSCPQAPR 392

Query: 152 RAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSR 210
            AA  G    +     D  G R    GG   P   RR     R +  P+R   L L  R
Sbjct: 393 AAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGVPWRTQTLSLLRR 451


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 67/252 (26%), Positives = 88/252 (34%), Gaps = 46/252 (18%)

Query: 57  GTFSPESAAGTE-VSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQS 115
           G   P  A G +  +GA  P   T PA  P  P      G +G         PR S+   
Sbjct: 314 GAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQG------PRGSEGPQ 367

Query: 116 GSRLRPAAPGP--------------RPGCSSARASPAPA-APQAAARTAPGRAASGGSGP 160
           G R  P  PGP              +PG   A  +P  A AP       P      G  P
Sbjct: 368 GVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPP 427

Query: 161 GSRGQGSDQVGARPSR----AGGQPPPLTCR----RCRAAPRRSARPFRRP-GLPLKSRP 211
           G +G  S + GA  S+    A G+P P+  +          +R AR    P GLP     
Sbjct: 428 GPKG-NSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGE 486

Query: 212 GSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQG 271
             G G+R     G  G  G A    P+ +  S  P            +G  G     G+ 
Sbjct: 487 RGGPGSR-----GFPGADGVAGPKGPAGERGSPGP---------AGPKGSPGEAGRPGEA 532

Query: 272 TQPGCRLLSPAP 283
             PG + L+ +P
Sbjct: 533 GLPGAKGLTGSP 544



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 63/243 (25%), Positives = 78/243 (32%), Gaps = 55/243 (22%)

Query: 55  ERGTFSPESAAG----------------TEVSGAPHPDSRTRPAARPPHPRTRSPPGRSG 98
           ERG   P+ A G                + + GA        P   P  P     PG+ G
Sbjct: 243 ERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMG 302

Query: 99  SGTTFSAVPPRPSQHQSGSRLRPAAPGP-----RPGCSSARASPAPAAPQAAARTAPGRA 153
                    PR      G R RP APGP       G + A   P P  P           
Sbjct: 303 ---------PRGLP---GERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVG 350

Query: 154 ASGGSGP-GSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPG 212
           A G +GP G RG    Q G R     G+P P         P  +A P   PG     +PG
Sbjct: 351 AKGEAGPQGPRGSEGPQ-GVR-----GEPGP-------PGPAGAAGPAGNPG--ADGQPG 395

Query: 213 SGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGT 272
           +     + G  G+ G PG    S P        P+      G     G  G +   G   
Sbjct: 396 AKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPK------GNSGEPGAPGSKGDTGAKG 449

Query: 273 QPG 275
           +PG
Sbjct: 450 EPG 452



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 66/250 (26%), Positives = 82/250 (32%), Gaps = 40/250 (16%)

Query: 61  PESAAGTEVSGAPHPDSRTRP---AARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGS 117
           P +   T   G+P PD +T P   A +   P    PPG  G         P+ +  + G 
Sbjct: 535 PGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGK 594

Query: 118 RLRPAAPGP--------RPGCSSARASPAPAAPQAAARTAPGRAASGGSG--PGSRGQGS 167
                 PGP        + G + A+  P PA P A  R   G A S G    PG  G   
Sbjct: 595 AGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGP-AGERGEQGPAGSPGFQGLPGPAGPPG 653

Query: 168 DQVGARPSRAG-----GQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGT------- 215
           +    +P   G     G P P   R  R  P    R  + P  P   R  +G        
Sbjct: 654 E--AGKPGEQGVPGDLGAPGPSGARGERGFP--GERGVQGPPGPAGPRGANGAPGNDGAK 709

Query: 216 -GARSCGTWGSGGGPG---------TAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRR 265
             A + G  GS G PG          A    P  D     P+      G   VRG  G  
Sbjct: 710 GDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPI 769

Query: 266 RSNGQGTQPG 275
              G    PG
Sbjct: 770 GPPGPAGAPG 779



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 61/219 (27%), Positives = 75/219 (34%), Gaps = 31/219 (14%)

Query: 55  ERGTFSPESAAGTE-VSGAPHPDSRTRPAARPPHPRTRSPPGRSGS-GTTFSAVPPRPSQ 112
           ERG   P   AG    +GAP  D     A  P  P ++  PG  G  G   +A  P P  
Sbjct: 684 ERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKG 743

Query: 113 HQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA 172
            +  +   P      PG    R    P  P       PG A +    PG +G+      A
Sbjct: 744 DRGDAG--PKGADGSPGKDGVRGLTGPIGP-------PGPAGA----PGDKGESGPSGPA 790

Query: 173 RPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTA 232
            P+ A G P      R    P   A     PG     +PG+       G  G  G PG A
Sbjct: 791 GPTGARGAPGD----RGEPGPPGPAGFAGPPG--ADGQPGAKGEPGDAGAKGDAGPPGPA 844

Query: 233 AASSPSADFSSDSPQPIIIFG--GALRVRGCGGRRRSNG 269
             + P        P PI   G  GA   RG  G   + G
Sbjct: 845 GPAGP--------PGPIGNVGAPGAKGARGSAGPPGATG 875



 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 66/239 (27%), Positives = 76/239 (31%), Gaps = 38/239 (15%)

Query: 55  ERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGS-GTTFSAVPPRPSQH 113
           E G   P    G    G P  +     A +P  P  R PPG  G+ G   +A  P    H
Sbjct: 210 EPGASGPMGPRGPP--GPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGH 267

Query: 114 QSGSRL-------RPAAPGPRPGCSSARASPAPAAPQAAARTAPG-RAASGGSGP-GSRG 164
           +  S L        PA P   PG      +P    P    R  PG R   G  GP G+RG
Sbjct: 268 RGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGP----RGLPGERGRPGAPGPAGARG 323

Query: 165 -QGSDQVGARPSRAGGQPPPLTCRRCRA-------APRRSARPFRRPGLPLKSRPGSGTG 216
             G+      P   G   PP       A        PR S  P    G P    PG    
Sbjct: 324 NDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEP--GPPGPAGA 381

Query: 217 ARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPG 275
           A   G  G+ G PG   A+                  GA    G  G     G G  PG
Sbjct: 382 AGPAGNPGADGQPGAKGANGAPG------------IAGAPGFPGARGPSGPQGPGGPPG 428



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 59/214 (27%), Positives = 71/214 (33%), Gaps = 47/214 (21%)

Query: 61  PESAAGTEVS----GAPHPDSRTRPAARPPHPRTRSPPGRSG----------------SG 100
           P+ AAG        G P P     PA +      + PPG +G                 G
Sbjct: 585 PKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQG 644

Query: 101 TTFSAVPP----RPSQHQSGSRLRPAAPGPR--------PGCSSARASPAPAAPQAAART 148
               A PP    +P +      L   APGP         PG    +  P PA P+ A   
Sbjct: 645 LPGPAGPPGEAGKPGEQGVPGDL--GAPGPSGARGERGFPGERGVQGPPGPAGPRGANGA 702

Query: 149 APGRAASGGSG-PGSRG-QGSDQVGARPSRAG--GQPPPLTCRRCRAAPRRSARPFRRPG 204
                A G +G PG+ G QG+  +   P   G  G P P          R  A P    G
Sbjct: 703 PGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGP-------KGDRGDAGPKGADG 755

Query: 205 LPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPS 238
            P K      TG    G  G  G PG    S PS
Sbjct: 756 SPGKDGVRGLTG--PIGPPGPAGAPGDKGESGPS 787



 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 60/220 (27%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 71  GAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPR--P 128
           GAP P     P   P        PG SG         P       G   +P  PG R  P
Sbjct: 194 GAPGPQGFQGPPGEP------GEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPP 247

Query: 129 GCSSARASPAPAA--PQAAARTAPG-RAASGGSGP-GSRGQ-GSDQVGARPSRAGGQPPP 183
           G   AR  P  A        R   G   A G +GP G +G+ GS      P + G  P  
Sbjct: 248 GPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMG--PRG 305

Query: 184 LTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSS 243
           L   R R      A      G    + P   TG    G  G  G  G    + P     S
Sbjct: 306 LPGERGRPGAPGPAGARGNDGATGAAGPPGPTG--PAGPPGFPGAVGAKGEAGPQGPRGS 363

Query: 244 DSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAP 283
           + PQ +    G     G  G   + G   QPG +  + AP
Sbjct: 364 EGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAP 403



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 55/209 (26%), Positives = 69/209 (33%), Gaps = 19/209 (9%)

Query: 39  CSSGTCRLTRSRKSRLE--RGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGR 96
           C  G+   T    + +E  +G   P    G   +G P  D        P  P    PPG 
Sbjct: 95  CPDGSESPTDQETTGVEGPKGDTGPRGPRGP--AGPPGRDGIPGQPGLPGPPGPPGPPGP 152

Query: 97  SGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAP---AAPQAAARTAPGRA 153
            G G  F+  P     +   S    + PGP  G S  R  P P     PQ          
Sbjct: 153 PGLGGNFA--PQLSYGYDEKSTGGISVPGPM-GPSGPRGLPGPPGAPGPQGFQGPPGEPG 209

Query: 154 ASGGSGP-GSRG-------QGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGL 205
             G SGP G RG        G D    +P R G + PP   +  R  P  +  P  +   
Sbjct: 210 EPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPP-GPQGARGLPGTAGLPGMKGHR 268

Query: 206 PLKSRPGSGTGARSCGTWGSGGGPGTAAA 234
                 G+   A   G  G  G PG   A
Sbjct: 269 GFSGLDGAKGDAGPAGPKGEPGSPGENGA 297



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 68/244 (27%), Positives = 76/244 (31%), Gaps = 69/244 (28%)

Query: 55  ERGTFSPESAAG-TEVSGAPHPDSRTRPAARPPHPRT-RSPPGRSG----------SGTT 102
           ++G   P   AG T   GAP    R  P   PP P     PPG  G          +G  
Sbjct: 780 DKGESGPSGPAGPTGARGAP--GDRGEPG--PPGPAGFAGPPGADGQPGAKGEPGDAGAK 835

Query: 103 FSAVPPRPSQHQSGSRLRPAAP-GP-----RPGCSSARASPAPAA----PQAAARTAPGR 152
             A PP P+         PA P GP      PG   AR S  P      P AA R  P  
Sbjct: 836 GDAGPPGPAG--------PAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPG 887

Query: 153 AASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPG-LPLKSRP 211
            +     PG  G    + G                     PR    P  RPG +     P
Sbjct: 888 PSGNAGPPGPPGPAGKEGG-------------------KGPRGETGPAGRPGEVGPPGPP 928

Query: 212 GSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQG 271
           G      S G  G  G PGT              PQ I    G   V G  G+R   G  
Sbjct: 929 GPAGEKGSPGADGPAGAPGT------------PGPQGI---AGQRGVVGLPGQRGERGFP 973

Query: 272 TQPG 275
             PG
Sbjct: 974 GLPG 977



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 60/234 (25%), Positives = 77/234 (32%), Gaps = 29/234 (12%)

Query: 55   ERGTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQ 114
            E G   P  A+G    G P P      A  P        PG  GS     +   +  + +
Sbjct: 981  EPGKQGPSGASGER--GPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE 1038

Query: 115  SGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP----GSRGQGSDQV 170
            +G    PA P   PG   A  +P P  P   +        +G +GP    G+RG    Q 
Sbjct: 1039 TG----PAGP---PGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQG 1091

Query: 171  GARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPG 230
                    G+      +  R        P   PG P +  P   +G       G  G PG
Sbjct: 1092 PRGDKGETGEQGDRGIKGHRGFSGLQGPP-GPPGSPGEQGPSGASGPA-----GPRGPPG 1145

Query: 231  TAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPP 284
            +A A  P  D  +  P PI    G    RG  G     G    PG     P PP
Sbjct: 1146 SAGA--PGKDGLNGLPGPI----GPPGPRGRTGDAGPVGPPGPPG----PPGPP 1189



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 61/226 (26%), Positives = 69/226 (30%), Gaps = 46/226 (20%)

Query: 60  SPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRL 119
           SP  A     +G P     T     P       PPG +G               Q G   
Sbjct: 522 SPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAG---------------QDG--- 563

Query: 120 RPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGG--SGPGSRGQGSDQVGARPSRA 177
           RP  PGP PG            P+ AA   PG+A   G    PG+ G        +   A
Sbjct: 564 RPGPPGP-PGARGQAGVMGFPGPKGAA-GEPGKAGERGVPGPPGAVGP-----AGKDGEA 616

Query: 178 GGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSP 237
           G Q PP       A  R    P   PG   +  PG        G  G  G PG   A  P
Sbjct: 617 GAQGPPGPAG--PAGERGEQGPAGSPG--FQGLPGPAGPPGEAGKPGEQGVPGDLGAPGP 672

Query: 238 SADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAP 283
           S               GA   RG  G R   G     G R  + AP
Sbjct: 673 S---------------GARGERGFPGERGVQGPPGPAGPRGANGAP 703



 Score = 29.3 bits (64), Expect = 6.2
 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 71   GAPHPDSRTR---PAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQ--HQSGSRLR 120
            G P P  RT    P   P  P    PPG   +G  FS +P  P +  H  G   R
Sbjct: 1163 GPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGGRYYR 1217


>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 86/304 (28%), Positives = 107/304 (35%), Gaps = 70/304 (23%)

Query: 73  PHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSS 132
           PHP S  RP+A         PPGR GSG      P + +  Q  S        P    +S
Sbjct: 168 PHPQSFRRPSAH--------PPGR-GSGRVPRGQPEQQAWEQRSSHFL----APEGSVAS 214

Query: 133 ARASPAPA-APQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRA 191
              S  PA AP+ A R     AA      GSRG+G  +   RP+  G    P   R   A
Sbjct: 215 LLPSAKPARAPRPAPRAREEAAA------GSRGRGGAE---RPAARGSAQQPPLARLLLA 265

Query: 192 APRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTA---------AASSPSADFS 242
           +    A    R   PL+ R GS +  R          P  +         A  SP+    
Sbjct: 266 SAVSLAASLARSPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPA---G 322

Query: 243 SDSPQPIIIFGGALRVRGCGGRRRSNGQ-----GTQPGCRLLSP-------APPR----- 285
              P P  +  G   V   G RRR  G+     G + GC L SP       AP R     
Sbjct: 323 HGLPLPRSLSRGGEVV---GARRRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERR 379

Query: 286 --RRYRKPLTLSFGGGVSSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTA--PKPKCWKH 341
             R++RK      GGG      P V+PR        R     R     T   P P  W+ 
Sbjct: 380 AARQWRKR-----GGG------PGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQG 428

Query: 342 SQPW 345
             P+
Sbjct: 429 GAPY 432



 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 74/273 (27%), Positives = 95/273 (34%), Gaps = 58/273 (21%)

Query: 62  ESAAGTEVSGAPHPDSRTRPAARPPHPR-------------TRSPPG---RSGSGTTFSA 105
           E+AAG+   G     +    A +PP  R              RSPP    R GS     A
Sbjct: 234 EAAAGSRGRGGAERPAARGSAQQPPLARLLLASAVSLAASLARSPPPLQPRLGS-----A 288

Query: 106 VPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQ 165
            PPR +   +GSR    +P PR     A  SP               A  G   P S  +
Sbjct: 289 SPPRLAAPLAGSRAPSLSPFPRRCRRRAERSP---------------AGHGLPLPRSLSR 333

Query: 166 GSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPL-KSRPGSGTGARSCGTWG 224
           G + VGAR  R G +      RR R   RR       P +P   + PG     R+   W 
Sbjct: 334 GGEVVGARRRRGGEE------RRVRG--RRQGCALGSPPIPAGPAAPGRAGERRAARQWR 385

Query: 225 S-GGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGC--RLLSP 281
             GGGPG +       +       P        R RG     R +    Q G   R +  
Sbjct: 386 KRGGGPGVSPREGAQGEGVRGGVTP--------RARGSSTCLRPSPATWQGGAPYRAIFA 437

Query: 282 APPRRRYRKPLTLSFGGG--VSSPTHPVVAPRR 312
           A PR            GG   S+PT+  ++ RR
Sbjct: 438 AGPRLSAPSAEAEEVPGGHTASNPTYEPLSSRR 470


>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 86/304 (28%), Positives = 107/304 (35%), Gaps = 70/304 (23%)

Query: 73  PHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSS 132
           PHP S  RP+A         PPGR GSG      P + +  Q  S        P    +S
Sbjct: 168 PHPQSFRRPSAH--------PPGR-GSGRVPRGQPEQQAWEQRSSHFL----APEGSVAS 214

Query: 133 ARASPAPA-APQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRA 191
              S  PA AP+ A R     AA      GSRG+G  +   RP+  G    P   R   A
Sbjct: 215 LLPSAKPARAPRPAPRAREEAAA------GSRGRGGAE---RPAARGSAQQPPLARLLLA 265

Query: 192 APRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTA---------AASSPSADFS 242
           +    A    R   PL+ R GS +  R          P  +         A  SP+    
Sbjct: 266 SAVSLAASLARSPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPA---G 322

Query: 243 SDSPQPIIIFGGALRVRGCGGRRRSNGQ-----GTQPGCRLLSP-------APPR----- 285
              P P  +  G   V   G RRR  G+     G + GC L SP       AP R     
Sbjct: 323 HGLPLPRSLSRGGEVV---GARRRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERR 379

Query: 286 --RRYRKPLTLSFGGGVSSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGTA--PKPKCWKH 341
             R++RK      GGG      P V+PR        R     R     T   P P  W+ 
Sbjct: 380 AARQWRKR-----GGG------PGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQG 428

Query: 342 SQPW 345
             P+
Sbjct: 429 GAPY 432



 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 74/273 (27%), Positives = 95/273 (34%), Gaps = 58/273 (21%)

Query: 62  ESAAGTEVSGAPHPDSRTRPAARPPHPR-------------TRSPPG---RSGSGTTFSA 105
           E+AAG+   G     +    A +PP  R              RSPP    R GS     A
Sbjct: 234 EAAAGSRGRGGAERPAARGSAQQPPLARLLLASAVSLAASLARSPPPLQPRLGS-----A 288

Query: 106 VPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQ 165
            PPR +   +GSR    +P PR     A  SP               A  G   P S  +
Sbjct: 289 SPPRLAAPLAGSRAPSLSPFPRRCRRRAERSP---------------AGHGLPLPRSLSR 333

Query: 166 GSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPL-KSRPGSGTGARSCGTWG 224
           G + VGAR  R G +      RR R   RR       P +P   + PG     R+   W 
Sbjct: 334 GGEVVGARRRRGGEE------RRVRG--RRQGCALGSPPIPAGPAAPGRAGERRAARQWR 385

Query: 225 S-GGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGC--RLLSP 281
             GGGPG +       +       P        R RG     R +    Q G   R +  
Sbjct: 386 KRGGGPGVSPREGAQGEGVRGGVTP--------RARGSSTCLRPSPATWQGGAPYRAIFA 437

Query: 282 APPRRRYRKPLTLSFGGG--VSSPTHPVVAPRR 312
           A PR            GG   S+PT+  ++ RR
Sbjct: 438 AGPRLSAPSAEAEEVPGGHTASNPTYEPLSSRR 470


>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
          Length = 503

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 60/199 (30%), Positives = 73/199 (36%), Gaps = 45/199 (22%)

Query: 77  SRTRPAARPP------HPRTRSPPGR-------SGSGTTFSAVPPRPSQHQSGSRLRPA- 122
           ++  PA +PP       P   S PG        SG+ T+  A  P P+     S  RPA 
Sbjct: 154 NQAAPAQKPPGRRLFPEPLPPSSPGFRPSSYPCSGASTSSQATQPGPALLSHASEARPAT 213

Query: 123 --------------APGPRPGCSSARASPAPAAPQAAARTAPGR-AASGGSGPGSRGQGS 167
                         A GP P      A P PA P  A    P R +     GP  RG+ S
Sbjct: 214 RSRITLVASALRRRASGPGPVIRGCTAQPGPAFPHRATHLDPARLSPESAPGPARRGRAS 273

Query: 168 DQVGAR--------PSRAGGQPPPLTCRRCRAAPRRSARPFR--RPGLPLKSRPG-SGTG 216
               AR        P+R G    P++  R R +   SAR  R   PG  L+ R   S  G
Sbjct: 274 VPGPARRGCDSAPGPARRGRDSAPVSAPRGRDSAPGSARRGRDSAPGPALRVRTARSDAG 333

Query: 217 ARSCGTWGSGGGPGTAAAS 235
            RS  T      PGT   S
Sbjct: 334 HRSTST-----TPGTGLRS 347



 Score = 35.4 bits (80), Expect = 0.087
 Identities = 76/317 (23%), Positives = 105/317 (33%), Gaps = 72/317 (22%)

Query: 26  RRANFSLSAAFRTCSSGTCRLTRSRKSRLERGTFSPESAAGTEVSG-------------- 71
           RR         R C++        R + L+    SPESA G    G              
Sbjct: 225 RRRASGPGPVIRGCTAQPGPAFPHRATHLDPARLSPESAPGPARRGRASVPGPARRGCDS 284

Query: 72  APHPDSRTRPAARPPHPRTR-SPPGRSGSGTTFSAVPP---RPSQHQSGSRLRPAAPGPR 127
           AP P  R R +A    PR R S PG +  G   +  P    R ++  +G R     PG  
Sbjct: 285 APGPARRGRDSAPVSAPRGRDSAPGSARRGRDSAPGPALRVRTARSDAGHRSTSTTPG-- 342

Query: 128 PGCSSARASPAPAAPQAAARTAPGRAASGGSGPG-SRGQGSDQVGARPSRAGGQPPPLTC 186
            G  S        + Q  +     R+ SG +    S G GS+++ A  SR+G   P +  
Sbjct: 343 TGLRS-------RSTQQRSALLSRRSLSGSADENPSCGTGSERL-AFQSRSGSPDPEVPS 394

Query: 187 R---------RCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSP 237
           R         R RA+   S  P  R  LP+  +    + +       S       + SSP
Sbjct: 395 RASPPVWHAVRMRAS---SPSPPGRFFLPIPQQWDESSSSSYASNSSSPSRSPGLSPSSP 451

Query: 238 SADF----SSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLT 293
           S +F    S  +P P                  S      P    LSP PP  +      
Sbjct: 452 SPEFLGLRSISTPSP-----------------ESLRYALMPEFYALSPVPPEEQ------ 488

Query: 294 LSFGGGVSSPTHPVVAP 310
                 + S  HP   P
Sbjct: 489 ----AEIESTAHPATPP 501


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.134    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,084,159
Number of Sequences: 37866
Number of extensions: 1669746
Number of successful extensions: 22665
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 2349
Number of HSP's that attempted gapping in prelim test: 11855
Number of HSP's gapped (non-prelim): 8854
length of query: 384
length of database: 18,247,518
effective HSP length: 104
effective length of query: 280
effective length of database: 14,309,454
effective search space: 4006647120
effective search space used: 4006647120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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