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Search of human proteins with 239743127
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743127 PREDICTED: hypothetical protein XP_002342742 [Homo
sapiens]
(111 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754535 PREDICTED: hypothetical protein [Homo sapiens] 237 2e-63
gi|239749100 PREDICTED: hypothetical protein XP_002346909 [Homo ... 237 2e-63
gi|239743127 PREDICTED: hypothetical protein XP_002342742 [Homo ... 237 2e-63
gi|239508784 PREDICTED: hypothetical protein [Homo sapiens] 237 2e-63
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens] 35 0.010
gi|24307963 zinc finger, DHHC-type containing 1 [Homo sapiens] 35 0.010
gi|169164474 PREDICTED: hypothetical protein [Homo sapiens] 34 0.029
gi|239747958 PREDICTED: hypothetical protein isoform 4 [Homo sap... 34 0.029
gi|239741853 PREDICTED: hypothetical protein isoform 2 [Homo sap... 34 0.029
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 34 0.029
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 33 0.038
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 33 0.064
gi|27734829 hypothetical protein LOC256329 [Homo sapiens] 33 0.064
gi|217416388 neuralized homolog 1B [Homo sapiens] 32 0.11
gi|32171205 EF-hand domain family, member A2 [Homo sapiens] 32 0.11
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|48475062 growth differentiation factor 6 precursor [Homo sapi... 32 0.14
gi|61742136 F-box and leucine-rich repeat protein 6 isoform 2 [H... 32 0.14
gi|16306576 F-box and leucine-rich repeat protein 6 isoform 1 [H... 32 0.14
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 31 0.19
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 31 0.19
gi|23510413 sorting nexin 26 [Homo sapiens] 31 0.19
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 31 0.24
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 30 0.32
gi|110611246 xylosyltransferase II [Homo sapiens] 30 0.32
gi|239755624 PREDICTED: hypothetical protein XP_002344645 [Homo ... 30 0.32
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
>gi|239754535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 111
Score = 237 bits (604), Expect = 2e-63
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MAARPKNLFWYRFLGALAWAQIMLLSARRLELGGARAPHSAPGAWDWLGRGPWRPPALAA 60
MAARPKNLFWYRFLGALAWAQIMLLSARRLELGGARAPHSAPGAWDWLGRGPWRPPALAA
Sbjct: 1 MAARPKNLFWYRFLGALAWAQIMLLSARRLELGGARAPHSAPGAWDWLGRGPWRPPALAA 60
Query: 61 LWLPGAPRERRPRPLSRRRGARGSASVCARRGPVRSESHGVPAPTTAPDAR 111
LWLPGAPRERRPRPLSRRRGARGSASVCARRGPVRSESHGVPAPTTAPDAR
Sbjct: 61 LWLPGAPRERRPRPLSRRRGARGSASVCARRGPVRSESHGVPAPTTAPDAR 111
>gi|239749100 PREDICTED: hypothetical protein XP_002346909 [Homo
sapiens]
Length = 111
Score = 237 bits (604), Expect = 2e-63
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MAARPKNLFWYRFLGALAWAQIMLLSARRLELGGARAPHSAPGAWDWLGRGPWRPPALAA 60
MAARPKNLFWYRFLGALAWAQIMLLSARRLELGGARAPHSAPGAWDWLGRGPWRPPALAA
Sbjct: 1 MAARPKNLFWYRFLGALAWAQIMLLSARRLELGGARAPHSAPGAWDWLGRGPWRPPALAA 60
Query: 61 LWLPGAPRERRPRPLSRRRGARGSASVCARRGPVRSESHGVPAPTTAPDAR 111
LWLPGAPRERRPRPLSRRRGARGSASVCARRGPVRSESHGVPAPTTAPDAR
Sbjct: 61 LWLPGAPRERRPRPLSRRRGARGSASVCARRGPVRSESHGVPAPTTAPDAR 111
>gi|239743127 PREDICTED: hypothetical protein XP_002342742 [Homo
sapiens]
Length = 111
Score = 237 bits (604), Expect = 2e-63
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MAARPKNLFWYRFLGALAWAQIMLLSARRLELGGARAPHSAPGAWDWLGRGPWRPPALAA 60
MAARPKNLFWYRFLGALAWAQIMLLSARRLELGGARAPHSAPGAWDWLGRGPWRPPALAA
Sbjct: 1 MAARPKNLFWYRFLGALAWAQIMLLSARRLELGGARAPHSAPGAWDWLGRGPWRPPALAA 60
Query: 61 LWLPGAPRERRPRPLSRRRGARGSASVCARRGPVRSESHGVPAPTTAPDAR 111
LWLPGAPRERRPRPLSRRRGARGSASVCARRGPVRSESHGVPAPTTAPDAR
Sbjct: 61 LWLPGAPRERRPRPLSRRRGARGSASVCARRGPVRSESHGVPAPTTAPDAR 111
>gi|239508784 PREDICTED: hypothetical protein [Homo sapiens]
Length = 111
Score = 237 bits (604), Expect = 2e-63
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MAARPKNLFWYRFLGALAWAQIMLLSARRLELGGARAPHSAPGAWDWLGRGPWRPPALAA 60
MAARPKNLFWYRFLGALAWAQIMLLSARRLELGGARAPHSAPGAWDWLGRGPWRPPALAA
Sbjct: 1 MAARPKNLFWYRFLGALAWAQIMLLSARRLELGGARAPHSAPGAWDWLGRGPWRPPALAA 60
Query: 61 LWLPGAPRERRPRPLSRRRGARGSASVCARRGPVRSESHGVPAPTTAPDAR 111
LWLPGAPRERRPRPLSRRRGARGSASVCARRGPVRSESHGVPAPTTAPDAR
Sbjct: 61 LWLPGAPRERRPRPLSRRRGARGSASVCARRGPVRSESHGVPAPTTAPDAR 111
>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
Length = 370
Score = 35.4 bits (80), Expect = 0.010
Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 22/77 (28%)
Query: 23 MLLSARRLELGGARAPHSAPGAWDWLGRGPWRPPALAALWLPGA----------PRERRP 72
+L +A GG+RAP GP R P L + LPG+ P RRP
Sbjct: 71 LLKAAAAAASGGSRAPR----------HGPARDPGLPSRRLPGSCPATPQSSGDPSSRRP 120
Query: 73 --RPLSRRRGARGSASV 87
RP R GARGS V
Sbjct: 121 LCRPAPREEGARGSQRV 137
>gi|24307963 zinc finger, DHHC-type containing 1 [Homo sapiens]
Length = 485
Score = 35.4 bits (80), Expect = 0.010
Identities = 31/80 (38%), Positives = 35/80 (43%), Gaps = 18/80 (22%)
Query: 45 WDWLGRGPWRPPALA-ALWLPGAP----RER---------RPRPLSRRRGARGSASVCAR 90
WD PWR P L A+W P AP R+R R RP RRRG A+ AR
Sbjct: 362 WDRKKPLPWRSPLLLLAMWGPQAPPCLCRKRGRGACIKCERLRPRIRRRGLGPPAAAPAR 421
Query: 91 ----RGPVRSESHGVPAPTT 106
R P +PAPTT
Sbjct: 422 RRIPRTPALCTPLALPAPTT 441
>gi|169164474 PREDICTED: hypothetical protein [Homo sapiens]
Length = 259
Score = 33.9 bits (76), Expect = 0.029
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 27 ARRLELGGARAPHSAPGAWDWLGRGPWRPPALAALWLPGAPRERRPRPLSRRRGARGSAS 86
AR GG A + G W P RP ALA LP ER+ RPL R G +A+
Sbjct: 88 ARATRGGGGCARATRGGDLGWAVALPHRPSALAGP-LPSQTAERQARPLVRELGRGSAAA 146
Query: 87 VC 88
C
Sbjct: 147 GC 148
>gi|239747958 PREDICTED: hypothetical protein isoform 4 [Homo
sapiens]
Length = 259
Score = 33.9 bits (76), Expect = 0.029
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 27 ARRLELGGARAPHSAPGAWDWLGRGPWRPPALAALWLPGAPRERRPRPLSRRRGARGSAS 86
AR GG A + G W P RP ALA LP ER+ RPL R G +A+
Sbjct: 88 ARATRGGGGCARATRGGDLGWAVALPHRPSALAGP-LPSQTAERQARPLVRELGRGSAAA 146
Query: 87 VC 88
C
Sbjct: 147 GC 148
>gi|239741853 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 259
Score = 33.9 bits (76), Expect = 0.029
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 27 ARRLELGGARAPHSAPGAWDWLGRGPWRPPALAALWLPGAPRERRPRPLSRRRGARGSAS 86
AR GG A + G W P RP ALA LP ER+ RPL R G +A+
Sbjct: 88 ARATRGGGGCARATRGGDLGWAVALPHRPSALAGP-LPSQTAERQARPLVRELGRGSAAA 146
Query: 87 VC 88
C
Sbjct: 147 GC 148
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 33.9 bits (76), Expect = 0.029
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 36 RAPHSAPGAWDWL---GRGPWRP-PALAALWLPGAPRERRPRPLSRR--RGARGSASVCA 89
R P +APG L G P P P ++ W AP E PL R + A V +
Sbjct: 1447 RLPPTAPGVGPLLLQLGTEPPAPHPGVSKPWRSAAPEEPERLPLHVRFLENCQPRAPVTS 1506
Query: 90 RRGPVRSESHGVPAPT 105
RGP + GVP P+
Sbjct: 1507 GRGPPSEDGPGVPPPS 1522
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 33.5 bits (75), Expect = 0.038
Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 34 GARAPH-----SAPGAWDWLGRGPWRPPALAALWLPG--APRERRPRPLSRRR----GAR 82
GA PH S PG + R P+ A WL G P R RP +RR G+
Sbjct: 816 GAVGPHRSHCCSQPGTQP--AQEAQRGPSPEASWLCGRYCPTPPRGRPCPQRRSSSCGST 873
Query: 83 GSASVCARRGPVRSESHGV--PAPTTAP 108
GS+ RGP S G P PT +P
Sbjct: 874 GSSHQSTARGPGGSPQEGTRQPGPTPSP 901
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 33.1 bits (74), Expect = 0.049
Identities = 28/87 (32%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 30 LELGGARAPHSAPGAWDWLGRGPWRPPALAALWLPGAPRERRPRPLSRRRGARGSASVCA 89
L G + P G GP PP A ++R RP R RG RG A
Sbjct: 124 LSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGG----A 179
Query: 90 RRGPVRSESHGV-----PAPTTAPDAR 111
RR VR + P PT AP +R
Sbjct: 180 RRPGVRGQGAAAVGPTGPRPTGAPPSR 206
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 36 RAPHSAPGAWDWLGRGPWRPPALAALWL-PGAPRERRPRPLSRRRGARGSA 85
R+PHS G W P PPA A L P A R P PL+ ARG A
Sbjct: 218 RSPHSGSG---WTPARPPSPPAGAPEALRPPASTTRAPAPLTLSFSARGLA 265
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 33.1 bits (74), Expect = 0.049
Identities = 28/87 (32%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 30 LELGGARAPHSAPGAWDWLGRGPWRPPALAALWLPGAPRERRPRPLSRRRGARGSASVCA 89
L G + P G GP PP A ++R RP R RG RG A
Sbjct: 124 LSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGG----A 179
Query: 90 RRGPVRSESHGV-----PAPTTAPDAR 111
RR VR + P PT AP +R
Sbjct: 180 RRPGVRGQGAAAVGPTGPRPTGAPPSR 206
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 36 RAPHSAPGAWDWLGRGPWRPPALAALWL-PGAPRERRPRPLSRRRGARGSA 85
R+PHS G W P PPA A L P A R P PL+ ARG A
Sbjct: 218 RSPHSGSG---WTPARPPSPPAGAPEALRPPASTTRAPAPLTLSFSARGLA 265
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 33.1 bits (74), Expect = 0.049
Identities = 28/87 (32%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 30 LELGGARAPHSAPGAWDWLGRGPWRPPALAALWLPGAPRERRPRPLSRRRGARGSASVCA 89
L G + P G GP PP A ++R RP R RG RG A
Sbjct: 124 LSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGG----A 179
Query: 90 RRGPVRSESHGV-----PAPTTAPDAR 111
RR VR + P PT AP +R
Sbjct: 180 RRPGVRGQGAAAVGPTGPRPTGAPPSR 206
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 36 RAPHSAPGAWDWLGRGPWRPPALAALWL-PGAPRERRPRPLSRRRGARGSA 85
R+PHS G W P PPA A L P A R P PL+ ARG A
Sbjct: 218 RSPHSGSG---WTPARPPSPPAGAPEALRPPASTTRAPAPLTLSFSARGLA 265
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 32.7 bits (73), Expect = 0.064
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 28 RRLELGGARAPHSAPGAWDWLGRGPWRPPALAALWLPGAPRE-----RRPRPLSRRRGAR 82
+RL G RAP AP A R P PP A PG P E P P +R GA
Sbjct: 596 KRLYCSGRRAPEDAPAA-----RRPKAPPGPARA-PPGQPAEPDAPRSSPGPGAREEGAG 649
Query: 83 GSASV---CARRGPVRSESHG 100
G+A+ RG S+S G
Sbjct: 650 GAATPEDGAGGRGSEGSQSPG 670
>gi|27734829 hypothetical protein LOC256329 [Homo sapiens]
Length = 634
Score = 32.7 bits (73), Expect = 0.064
Identities = 28/78 (35%), Positives = 31/78 (39%), Gaps = 15/78 (19%)
Query: 38 PHSAPGAWDWLGRGPWRPPALAALWLPGAPRERRPRPLSRRRGARGSASVC-------AR 90
P + PGA R P RPP R R PR RR G RG AR
Sbjct: 491 PEAGPGADT---RKPPRPPRPLR-----KGRVREPRVSRRRPGTRGLLPPVSSGKLFHAR 542
Query: 91 RGPVRSESHGVPAPTTAP 108
GP R E+ +PAP P
Sbjct: 543 EGPARPENPEIPAPQHLP 560
>gi|217416388 neuralized homolog 1B [Homo sapiens]
Length = 555
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/47 (46%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 48 LGRGPWRPPA-LAALWLPGAPRERRPRPLSRRRGARGSASVCARRGP 93
LGR P PPA AA +P PRE RPRP S A RGP
Sbjct: 243 LGRAPGPPPADAAAAAIPCGPRE-RPRPASSPALLEADLRFHATRGP 288
>gi|32171205 EF-hand domain family, member A2 [Homo sapiens]
Length = 530
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 51 GPWRPPALAALWLPGAP---RERRPRPLS----RRRGARGSASVCARRG 92
GPW PA+ L LPG P RE R ++ RRR G SV A G
Sbjct: 26 GPWGRPAVTTLGLPGRPFSSREDEERAVAEAAWRRRRRWGELSVAAAAG 74
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 31.6 bits (70), Expect = 0.14
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 36 RAPHSAPGAWDWLGRGPWRPPALAALWLP-GAPRERRPRPLSRRRGARGSASVCARRGPV 94
RAP ++ G P P P AP R PR RR G+R A A GP
Sbjct: 278 RAPRTSAGLAGVGSGAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPC 337
Query: 95 RSESHGV----PAPTTAP 108
+ + G P+P P
Sbjct: 338 PAAAQGARGSWPSPRCLP 355
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 17/70 (24%)
Query: 34 GARAPHSAPGAWDWLGRGPWRPPALAALWLPGAPRERRPRPLSRRRGARGSASVCARRGP 93
G R P +APGA R A A++ G R + P R C RRG
Sbjct: 158 GPRRPRAAPGA---------RSGAAASVAAAGGTRLAQQAPFPAAR--------CRRRGA 200
Query: 94 VRSESHGVPA 103
+R H V A
Sbjct: 201 IRKPLHDVTA 210
>gi|48475062 growth differentiation factor 6 precursor [Homo
sapiens]
Length = 455
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 24 LLSARRLELGGARAPHSAPGAWDWLGRGPWRPPALAA---LWLPGAPRERRPRPLSRRRG 80
L + R +LG A A GA G W PP+ A WLP R RR + R G
Sbjct: 289 LFAEMREQLGSAEAAGPGAGA-----EGSWPPPSGAPDARPWLPSPGRRRRRTAFASRHG 343
Query: 81 AR 82
R
Sbjct: 344 KR 345
>gi|61742136 F-box and leucine-rich repeat protein 6 isoform 2 [Homo
sapiens]
Length = 533
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 58 LAALWLPGAPRERRPRPLSRR---RGARGSASVCARRGPVRSESHGVPAPTTAP 108
L L PG R R R SRR + RG ++ + +RSE+ PAP AP
Sbjct: 46 LLVLSEPGPARPRAQRRASRRTPRQPPRGPSAAAKPKAGLRSEAAAAPAPAPAP 99
>gi|16306576 F-box and leucine-rich repeat protein 6 isoform 1 [Homo
sapiens]
Length = 539
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 58 LAALWLPGAPRERRPRPLSRR---RGARGSASVCARRGPVRSESHGVPAPTTAP 108
L L PG R R R SRR + RG ++ + +RSE+ PAP AP
Sbjct: 46 LLVLSEPGPARPRAQRRASRRTPRQPPRGPSAAAKPKAGLRSEAAAAPAPAPAP 99
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 31.2 bits (69), Expect = 0.19
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 35 ARAPHS-APGAWDWLGRGPWRPP---ALAALWLPGAPRERRPRPLSRRRGARGSASV--- 87
AR P + APG G RPP AAL + GA +PL+ R G G A++
Sbjct: 14 ARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPES 73
Query: 88 CARRGPVRSESHGVPAPTTAPDA 110
R GP RS P + P A
Sbjct: 74 APRAGPTRSAGTSSRNPASRPPA 96
Score = 29.3 bits (64), Expect = 0.71
Identities = 31/97 (31%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 12 RFLGALAWAQIMLLSARRLELGGARAPHSAPGAWDWLGRGPWRPPALAALWLPGAPRERR 71
R LGA L+ R +GGA P SAP A GP R ++ R
Sbjct: 45 RVLGAAGAVGRKPLAERAGGIGGATIPESAPRA------GPTRSAGTSS-------RNPA 91
Query: 72 PRPLSRRRGARGSASVCARRGPVRSESHGVPAPTTAP 108
RP + RG R + GPV S G + TT P
Sbjct: 92 SRPPASGRGERAPPAKNTSPGPV--SSPGRASGTTRP 126
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 31.2 bits (69), Expect = 0.19
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 35 ARAPHS-APGAWDWLGRGPWRPP---ALAALWLPGAPRERRPRPLSRRRGARGSASV--- 87
AR P + APG G RPP AAL + GA +PL+ R G G A++
Sbjct: 14 ARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPES 73
Query: 88 CARRGPVRSESHGVPAPTTAPDA 110
R GP RS P + P A
Sbjct: 74 APRAGPTRSAGTSSRNPASRPPA 96
Score = 29.3 bits (64), Expect = 0.71
Identities = 31/97 (31%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 12 RFLGALAWAQIMLLSARRLELGGARAPHSAPGAWDWLGRGPWRPPALAALWLPGAPRERR 71
R LGA L+ R +GGA P SAP A GP R ++ R
Sbjct: 45 RVLGAAGAVGRKPLAERAGGIGGATIPESAPRA------GPTRSAGTSS-------RNPA 91
Query: 72 PRPLSRRRGARGSASVCARRGPVRSESHGVPAPTTAP 108
RP + RG R + GPV S G + TT P
Sbjct: 92 SRPPASGRGERAPPAKNTSPGPV--SSPGRASGTTRP 126
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/75 (30%), Positives = 25/75 (33%), Gaps = 16/75 (21%)
Query: 34 GARAPHSAPGAWDWLGRGPWRPPALAALWLPGAPRERRPRPLSRRRGARGSASVCARRGP 93
G R PH P GPW PP L+ R P + RG R G
Sbjct: 1054 GPRTPHRVP--------GPWGPPEPLLLY--------RAAPPAYGRGGELHRGSLYRNGG 1097
Query: 94 VRSESHGVPAPTTAP 108
R E G P P P
Sbjct: 1098 QRGEGAGPPPPYPTP 1112
>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
Length = 379
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 25 LSARRLELGGARAPHSAPGAWDWLGRGPWRPPALAALWLPGAPRERRPRPLSRRRGARGS 84
L+AR L G +AP L G W P L LW P RP + G
Sbjct: 63 LAARSPVLRGPQAP---------LRPGGWAPDGLKHLWAPTG----RPGVPNTAAGEDAD 109
Query: 85 ASVCARRGPVRSESHGVP 102
+ C RRG G P
Sbjct: 110 VAACPRRGEEEEGGGGFP 127
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 30.4 bits (67), Expect = 0.32
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 34 GARAPHSAPGAWDWLGR-GPWRPPALAALWLPGAPRERRPRPLSRRRGARGSASVCARRG 92
G R P A G GR GP PP A GAP E+ P+ + R G +G + G
Sbjct: 1090 GERGPAGAAGPIGIPGRPGPQGPPGPAGE--KGAPGEKGPQGPAGRDGLQGPVGLPGPAG 1147
Query: 93 PV 94
PV
Sbjct: 1148 PV 1149
Score = 27.7 bits (60), Expect = 2.1
Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 34 GARAPHSAPGAWDWLG-RGPWRPPALAALWLPGAPRERRPRPLSRRRGARGSASVCARRG 92
G R P+ G + G +GP PP L PG P +R + G G V +G
Sbjct: 946 GERGPNGPQGPTGFPGPKGPPGPPGKDGL--PGHPGQRGETGFQGKTGPPGPPGVVGPQG 1003
Query: 93 PVRSE----SHGVPAPTTAP 108
P G P P P
Sbjct: 1004 PTGETGPMGERGHPGPPGPP 1023
>gi|110611246 xylosyltransferase II [Homo sapiens]
Length = 865
Score = 30.4 bits (67), Expect = 0.32
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 68 RERRPRPLSRRRGARGSASVCARRGPV---------RSESHGVP 102
R+R+PRPL G++ + S RRG R+ES GVP
Sbjct: 48 RQRKPRPLDPGEGSKDTDSSAGRRGSTGRRHGRWRGRAESPGVP 91
>gi|239755624 PREDICTED: hypothetical protein XP_002344645 [Homo
sapiens]
Length = 427
Score = 30.4 bits (67), Expect = 0.32
Identities = 33/99 (33%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Query: 21 QIMLLSARRLELGGARAP--HSAPGAWDWLGRGPWRPPALAALWLPGAPRERRPRPLSRR 78
Q+ +L R +E G P H A A W PPA+AAL P AP E + RR
Sbjct: 275 QVQVLE-REVEEGVREGPLQHVAKEAAHW-------PPAVAALLPPRAPDELASLVVLRR 326
Query: 79 RGAR------GSASVCARRGPVRSESHGVPAPTTAPDAR 111
R R +A R P + E V P DAR
Sbjct: 327 RLHRQEQEHASAAGALGRCVPKQREVAAVAVPQEVLDAR 365
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 30.4 bits (67), Expect = 0.32
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 14/72 (19%)
Query: 29 RLELGGARAPHSAPGAWDWLGRGPWRPPALAALWLPGAPRERRPRPLSRRRGARGSASVC 88
R GG PG GRG WR P PR +RP P + ARG+A+
Sbjct: 17 RAPSGGGSGQAQRPGP----GRGSWRRP----------PRRQRPGPAAPSPPARGAAAWG 62
Query: 89 ARRGPVRSESHG 100
G ++S G
Sbjct: 63 RSGGGPAAQSGG 74
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,649,269
Number of Sequences: 37866
Number of extensions: 311781
Number of successful extensions: 1720
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 167
Number of HSP's that attempted gapping in prelim test: 1581
Number of HSP's gapped (non-prelim): 306
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.