Guide to the Human Genome
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Name: LOC100288217 Sequence: fasta or formatted (111aa) NCBI GI: 239743127
Description:

PREDICTED: hypothetical protein XP_002342742

Not currently referenced in the text

Other entries for this name:
alt mRNA {111aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.0         20           2
 C cysteine            0.9          1           1
 D aspartate           1.8          2           1
 E glutamate           2.7          3           1
 F phenylalanine       1.8          2           1
 G glycine             9.9         11           2
 H histidine           1.8          2           1
 I isoleucine          0.9          1           1
 K lysine              0.9          1           1
 L leucine            10.8         12           2
 M methionine          1.8          2           1
 N asparagine          0.9          1           1
 P proline            12.6         14           2
 Q glutamine           0.9          1           1
 R arginine           17.1         19           3
 S serine              6.3          7           1
 T threonine           1.8          2           2
 V valine              2.7          3           1
 W tryptophan          5.4          6           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342742 
LOC100292315          1.000   PREDICTED: hypothetical protein 
LOC100290788          1.000   PREDICTED: hypothetical protein XP_002346909 
LOC100288217          1.000   PREDICTED: hypothetical protein 
CABP1                 0.047   calcium binding protein 1 isoform 3 
ZDHHC1                0.047   zinc finger, DHHC-type containing 1 
LOC348751             0.042   PREDICTED: hypothetical protein 
LOC348751             0.042   PREDICTED: hypothetical protein isoform 4 
LOC348751             0.042   PREDICTED: hypothetical protein isoform 2 
SHANK1                0.042   SH3 and multiple ankyrin repeat domains 1 
RP1L1                 0.038   retinitis pigmentosa 1-like 1 
LOC729570             0.038   PREDICTED: hypothetical protein 
LOC729570             0.038   PREDICTED: hypothetical protein 
LOC729570             0.038   PREDICTED: hypothetical protein 
ZFPM1                 0.038   zinc finger protein, multitype 1 
C11orf35              0.038   hypothetical protein LOC256329 
NEURL1B               0.033   neuralized homolog 1B 
EFHA2                 0.033   EF-hand domain family, member A2 
LOC100127930          0.033   PREDICTED: hypothetical protein 
GDF6                  0.033   growth differentiation factor 6 precursor 
FBXL6                 0.033   F-box and leucine-rich repeat protein 6 isoform 2 [H...
FBXL6                 0.033   F-box and leucine-rich repeat protein 6 isoform 1 [H...
FLJ22184              0.028   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.028   PREDICTED: hypothetical protein FLJ22184 
SNX26                 0.028   sorting nexin 26 
C17orf96              0.028   hypothetical protein LOC100170841 
COL5A1                0.024   alpha 1 type V collagen preproprotein 
XYLT2                 0.024   xylosyltransferase II 
LOC100291673          0.024   PREDICTED: hypothetical protein XP_002344645 
LOC284988             0.024   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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