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Search of human proteins with 239743069
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
(231 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 479 e-136
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens] 479 e-136
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens] 468 e-132
gi|239749044 PREDICTED: hypothetical protein XP_002346891 [Homo ... 180 1e-45
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 56 3e-08
gi|110832843 TBP-associated factor 4 [Homo sapiens] 55 4e-08
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 54 9e-08
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 53 2e-07
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 50 1e-06
gi|169161029 PREDICTED: hypothetical protein [Homo sapiens] 49 3e-06
gi|169211844 PREDICTED: hypothetical protein [Homo sapiens] 49 3e-06
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 49 4e-06
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 49 4e-06
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 48 6e-06
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 47 1e-05
gi|82546824 forkhead box K1 [Homo sapiens] 47 1e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 47 1e-05
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 47 1e-05
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 47 1e-05
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 47 1e-05
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 47 1e-05
gi|239754474 PREDICTED: similar to mucin [Homo sapiens] 47 2e-05
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ... 47 2e-05
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 47 2e-05
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 47 2e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 46 2e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 46 2e-05
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 46 3e-05
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 46 3e-05
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 479 bits (1234), Expect = e-136
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP
Sbjct: 1 MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
Query: 61 ATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV 120
ATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV
Sbjct: 61 ATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV 120
Query: 121 RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH 180
RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH
Sbjct: 121 RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH 180
Query: 181 VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP
Sbjct: 181 VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 479 bits (1234), Expect = e-136
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP
Sbjct: 1 MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
Query: 61 ATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV 120
ATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV
Sbjct: 61 ATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV 120
Query: 121 RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH 180
RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH
Sbjct: 121 RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH 180
Query: 181 VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP
Sbjct: 181 VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 468 bits (1204), Expect = e-132
Identities = 228/231 (98%), Positives = 228/231 (98%), Gaps = 3/231 (1%)
Query: 1 MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP
Sbjct: 1 MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
Query: 61 ATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV 120
ATAESPDTPEEPPEEPAPAIAPGG GGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV
Sbjct: 61 ATAESPDTPEEPPEEPAPAIAPGG---GGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV 117
Query: 121 RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH 180
RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH
Sbjct: 118 RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH 177
Query: 181 VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP
Sbjct: 178 VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 228
>gi|239749044 PREDICTED: hypothetical protein XP_002346891 [Homo
sapiens]
Length = 114
Score = 180 bits (456), Expect = 1e-45
Identities = 87/89 (97%), Positives = 87/89 (97%)
Query: 1 MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP
Sbjct: 1 MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
Query: 61 ATAESPDTPEEPPEEPAPAIAPGGSGGGG 89
ATAESPDTPEEPPEEPAPAIAPGGSG G
Sbjct: 61 ATAESPDTPEEPPEEPAPAIAPGGSGENG 89
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 55.8 bits (133), Expect = 3e-08
Identities = 62/211 (29%), Positives = 76/211 (36%), Gaps = 31/211 (14%)
Query: 24 GWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPG 83
G R +++S P +S P + R +AAAAA P P E P+P AP
Sbjct: 325 GGRPGSAHSPPDKPSSPSPRV-RDKAAAAA------------PTPPARGKESPSPRSAPS 371
Query: 84 GSGGG---GGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRG 140
G G GG G + RR + A A R AP R L R R
Sbjct: 372 SQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSD 431
Query: 141 GRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAG- 199
A PGP+ G+ER H RPP A A S GA GGP G
Sbjct: 432 SGSGRGAPGPGPE-PGSERGHGGHGKRAKERPP----RARPASTSPSPGAHGRRGGPEGK 486
Query: 200 ---------PRESWARRTSSPPRGAAGGGRP 221
PR + R+ S R + RP
Sbjct: 487 SSSRSPGPHPRSWSSSRSPSKSRSRSAEKRP 517
Score = 30.8 bits (68), Expect = 1.0
Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 13/116 (11%)
Query: 105 REQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAH 164
R++G G +PSG +R GG G R +PG + ++ P+
Sbjct: 283 RDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDK--PSS 340
Query: 165 RAPRL-----ARPPVPPS------VAHVARASAGLGARPVPGGPAGPRESWARRTS 209
+PR+ A P PP+ A +S G G R G R RR S
Sbjct: 341 PSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRS 396
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 55.5 bits (132), Expect = 4e-08
Identities = 70/220 (31%), Positives = 80/220 (36%), Gaps = 32/220 (14%)
Query: 13 PCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATA--ESPDTPE 70
P RP+V G + RP SAG C AAAA AG PA A P P
Sbjct: 107 PPSPRRPLVPAGPAPPAAKLRPPPEGSAGS--CAPVPAAAAVAAGPEPAPAGPAKPAGPA 164
Query: 71 EPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAP-----S 125
P PG G G G G AG A + AA+L H AAP +
Sbjct: 165 ALAARAGPGPGPGPGPGPGPGPGK---PAGPGAAQTLNGSAALLN--SHHAAAPAVSLVN 219
Query: 126 GLRRRRLQRRRGGRGGR------GAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVA 179
L + G G A P P A + + PA AP A PP PP+ A
Sbjct: 220 NGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAP-AAPSPPAAPAPAAPAAAPPPPPPAPA 278
Query: 180 HVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGG 219
+AR PG PAGP A PP A GG
Sbjct: 279 TLARP---------PGHPAGP--PTAAPAVPPPAAAQNGG 307
Score = 39.3 bits (90), Expect = 0.003
Identities = 54/192 (28%), Positives = 68/192 (35%), Gaps = 25/192 (13%)
Query: 28 RNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGG 87
R R ++ + G + A AA AAPA +P EPP PA PGG G
Sbjct: 46 RTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEG-APGAAPEPP--PAGRARPGGGGP 102
Query: 88 GGGG----------CGAQHWAAGRRAQREQGAGA-----AVLADFGHVRAAPSGLRR--- 129
G G AA R E AG+ A A AP+G +
Sbjct: 103 QRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAG 162
Query: 130 -RRLQRRRGGRGGRGAGRARKPGPDR---AGAERSLPAHRAPRLARPPVPPSVAHVARAS 185
L R G G G G PGP + GA ++L A + P+V+ V
Sbjct: 163 PAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGP 222
Query: 186 AGLGARPVPGGP 197
A L P P P
Sbjct: 223 AALLPLPKPAAP 234
Score = 36.6 bits (83), Expect = 0.019
Identities = 51/188 (27%), Positives = 70/188 (37%), Gaps = 17/188 (9%)
Query: 34 PSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEP--PEEPAPAIAPGGSGGGGGG 91
P + A+ P AA AA PA A P P P APA+ P + GG
Sbjct: 249 PPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGS 308
Query: 92 CGAQHW---AAGRRA--QREQGAGAAVLADFGHVRA-APSGLRRRR--LQRRRGGRGGRG 143
GA AAG A + G GAA A V+A +P + + + G
Sbjct: 309 AGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPAS 368
Query: 144 AGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRES 203
+ GP GA LP +P PP P + + + +AG + + P S
Sbjct: 369 TAASMVIGPTMQGA---LP---SPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTA-TTS 421
Query: 204 WARRTSSP 211
R T +P
Sbjct: 422 GIRATLTP 429
Score = 34.7 bits (78), Expect = 0.071
Identities = 29/76 (38%), Positives = 32/76 (42%), Gaps = 16/76 (21%)
Query: 155 AGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARP---------VPGGPAGPRESWA 205
AGA + PA AP A P P A AR G RP VP GPA P A
Sbjct: 71 AGAGPAAPAEGAPGAAPEPPP---AGRARPGGGGPQRPGPPSPRRPLVPAGPAPP----A 123
Query: 206 RRTSSPPRGAAGGGRP 221
+ PP G+AG P
Sbjct: 124 AKLRPPPEGSAGSCAP 139
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 54.3 bits (129), Expect = 9e-08
Identities = 59/216 (27%), Positives = 85/216 (39%), Gaps = 35/216 (16%)
Query: 34 PSSRASAGPGLCRTEAAAA----ATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGG 89
P A+ P L + A T + ++ T+E E PP A G GGGG
Sbjct: 1299 PRRAAAKSPDLSNQNSDQANEEWETASESSDFTSERRGDKEAPPPVLLTPKAVGTPGGGG 1358
Query: 90 GGC--GAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGR-------- 139
GG G + G +QR + + + G+ R+ + GG+
Sbjct: 1359 GGAVPGISAMSRGDLSQRAKDLSKRSFS------SQRPGMERQNRRPGPGGKAGSSGSSS 1412
Query: 140 GGRGAGRARKPGPDRAGAERSLPA---------HRAPRLARPPVPPSVAHVARASAGLGA 190
GG G G + GP R G +RS P+ R P L PP PPS + V R
Sbjct: 1413 GGGGGGPGGRTGPGR-GDKRSWPSPKNRSRPPEERPPGLPLPPPPPSSSAVFRLD----- 1466
Query: 191 RPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPG 226
+ + PAG +++ A+ +S A GG P PG
Sbjct: 1467 QVIHSNPAGIQQALAQLSSRQGSVTAPGGHPRHKPG 1502
Score = 37.4 bits (85), Expect = 0.011
Identities = 52/224 (23%), Positives = 73/224 (32%), Gaps = 25/224 (11%)
Query: 24 GWRMRNSNSRPSSRASAG----PGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPA 79
G R+ PS R G P +C + A + A P T P + E E+ P
Sbjct: 1157 GGRVFTPRGVPSRRGRGGGRPPPQVCPGWSPPAKSLAPKKPPTGPLPPSKEPLKEKLIPG 1216
Query: 80 -IAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGG 138
++P GG GG R +R G + P RR + +R
Sbjct: 1217 PLSPVARGGSNGGSNVGMEDGERPRRRRHGR--------AQQQDKPPRFRRLKQERENAA 1268
Query: 139 RGGRGAGR----ARKPGPDRAGAERSL-PAHRAPRLARPPVPPSVA-------HVARASA 186
RG G A PGP+ A ++ PA R P + + A S+
Sbjct: 1269 RGSEGKPSLTLPASAPGPEEALTTVTVAPAPRRAAAKSPDLSNQNSDQANEEWETASESS 1328
Query: 187 GLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGD 230
+ A P + P G GG P + RGD
Sbjct: 1329 DFTSERRGDKEAPPPVLLTPKAVGTPGGGGGGAVPGISAMSRGD 1372
Score = 31.6 bits (70), Expect = 0.60
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 30 SNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEE----PPEE-------PAP 78
+ S P+ +A P L + ++T +G+ A+ P P + PPEE P P
Sbjct: 555 AQSTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPEPPEEVPPPTTPPVP 614
Query: 79 AIAPGGSGGG 88
+ P G G G
Sbjct: 615 KVEPKGDGIG 624
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 53.1 bits (126), Expect = 2e-07
Identities = 55/170 (32%), Positives = 65/170 (38%), Gaps = 25/170 (14%)
Query: 72 PPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRR 131
P +E APA+ G G GG GA + G R R A + A P+G R
Sbjct: 41 PGDEAAPALGRRGKGSGGPEAGADGLSRGERGPRR--------AAVPELSAQPAGSPRAS 92
Query: 132 LQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARP-----PVPPSVAHVARASA 186
L G GG G G AR G +R H +PR R P PPSV + +
Sbjct: 93 L---AGSDGGGGGGSARSSGISLGYDQR----HGSPRSGRSDPRPGPGPPSVGSARSSVS 145
Query: 187 GLGARPVPGGPAG---PRESWARRTSSPPRGAAGGGRPF--LHPGGRGDP 231
LG+R G A P A S P G A P L PG G P
Sbjct: 146 SLGSRGSAGAYADFLPPGACPAPARSPEPAGPAPFPLPALPLPPGREGGP 195
Score = 38.9 bits (89), Expect = 0.004
Identities = 43/154 (27%), Positives = 55/154 (35%), Gaps = 12/154 (7%)
Query: 33 RPSSRASAGPGLCRTEAAAAATRAGA--------APATAESPDTPEEPPEEPAPAIAPGG 84
RP A P L R + AGA P A P+ +P P ++A
Sbjct: 38 RPGPGDEAAPALGRRGKGSGGPEAGADGLSRGERGPRRAAVPELSAQPAGSPRASLAGSD 97
Query: 85 SGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGA 144
GGGGG + + G + G+ + +D PS R G RG GA
Sbjct: 98 GGGGGGSARSSGISLG--YDQRHGSPRSGRSDPRPGPGPPSVGSARSSVSSLGSRGSAGA 155
Query: 145 -GRARKPGPDRAGAERSLPAHRAP-RLARPPVPP 176
PG A A PA AP L P+PP
Sbjct: 156 YADFLPPGACPAPARSPEPAGPAPFPLPALPLPP 189
Score = 31.6 bits (70), Expect = 0.60
Identities = 31/86 (36%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 28 RNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAI-APGGSG 86
R+S S SR SAG A A GA PA A SP+ P P P PA+ P G
Sbjct: 141 RSSVSSLGSRGSAG-------AYADFLPPGACPAPARSPE-PAGPAPFPLPALPLPPGRE 192
Query: 87 GGGGGCGAQHWAAGRRAQREQGAGAA 112
GG + A R +R A A
Sbjct: 193 GGPSAAERRLEALTRELERALEARTA 218
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 50.4 bits (119), Expect = 1e-06
Identities = 49/170 (28%), Positives = 61/170 (35%), Gaps = 49/170 (28%)
Query: 34 PSSRASAGPGLCRTEAAAAATRAGA--APATAESPDTPEEPPEEPAPAIAPGGSGGGGGG 91
P + A+ G AA R+G + S P PP P+ + + G SG GGG
Sbjct: 4 PPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGG 63
Query: 92 CGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPG 151
G+G+A G + A G RR R GGR G A RAR+P
Sbjct: 64 ----------------GSGSAGQPTLGSMLAV--GSAARRASERAGGRAGGTALRAREP- 104
Query: 152 PDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPR 201
P L PP PP +P P GPA PR
Sbjct: 105 --------------PPPLLPPPSPP--------------QPGPKGPASPR 126
>gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 49.3 bits (116), Expect = 3e-06
Identities = 42/149 (28%), Positives = 60/149 (40%), Gaps = 18/149 (12%)
Query: 75 EPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQR 134
E +P ++ G G A AA R ++ A + +G RA R L R
Sbjct: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARA-------RGLDR 117
Query: 135 RRGGRGGRGAGRARKPGPDRAGAERSLPA-----------HRAPRLARPPVPPSVAHVAR 183
R G GGR G +P P GA + PA RAP++ +PP + ++R
Sbjct: 118 RAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSR 177
Query: 184 ASAGLGARPVPGGPAGPRESWARRTSSPP 212
A G R +PG P S + + PP
Sbjct: 178 AGGATGGRGLPGRRGLPGRSGLQGAAVPP 206
>gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 49.3 bits (116), Expect = 3e-06
Identities = 56/176 (31%), Positives = 67/176 (38%), Gaps = 34/176 (19%)
Query: 69 PEEPPEEPAPAIAPGGS-GGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPS-- 125
P + E P P G + GGGGGG G+ GR AQR GAGA + AAPS
Sbjct: 19 PGDGDEAPGPGGGEGAAAGGGGGGLGS----GGRSAQRRAGAGAR-----RPIGAAPSVG 69
Query: 126 ------GLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAE---RSLPAHRAPRLARPPVPP 176
G R+ R G G G + R+ P R + RS A A R R P
Sbjct: 70 PGGELQGWGRKSGCRPPGPEGWAGGRKLRRWLPPRRFSNFCCRSPCAQTAVRRRRRRAPS 129
Query: 177 SVAHVARASAGLG-------------ARPVPGGPAGPRESWARRTSSPPRGAAGGG 219
R AG G A P+ G R + R+ PPR GGG
Sbjct: 130 PRGAGWREGAGAGRGTPATMAGGEWAAEPLHLPQRGRRRRFTCRSGRPPRRGRGGG 185
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 48.9 bits (115), Expect = 4e-06
Identities = 45/135 (33%), Positives = 57/135 (42%), Gaps = 23/135 (17%)
Query: 34 PSSRASAGPGLCRTEAAA-AATRAGAAPATAESPDTPEEPPEEPAPAIA------PGGSG 86
P + A PG + A A AA A A P PEEPP E + P G G
Sbjct: 107 PLAPKGAAPGAVQPVAGAEAAPAATLAALGGRRPGPPEEPPRELESVPSKLGEPPPLGEG 166
Query: 87 GGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQ-RRRGGRGGRGAG 145
GGGGG G A G +RE GA P G R + ++ ++RGG GG GA
Sbjct: 167 GGGGGEGG--GAGGGSGEREGGAPQP---------PPPRGWRGKGVRAQQRGGSGGEGA- 214
Query: 146 RARKPGPDRAGAERS 160
P P + A ++
Sbjct: 215 ---SPSPSSSSAGKT 226
Score = 35.8 bits (81), Expect = 0.032
Identities = 39/180 (21%), Positives = 64/180 (35%), Gaps = 16/180 (8%)
Query: 24 GWRMRNSNSRPSSRASAGPGL-CRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAP 82
G R + P R G G+ + + A +P+++ + TP +A
Sbjct: 181 GEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTPGTGSRNSGSGVAG 240
Query: 83 GGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGR 142
GGSGGGG +W ++G + L F H++ + Q GG
Sbjct: 241 GGSGGGG-----SYW--------KEGCLQSELIQF-HLKKERAAAAAAAAQMHAKNGGGS 286
Query: 143 GAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRE 202
+ + GP A E A +P A P A + + G+ A P P++
Sbjct: 287 SSRSSPVSGPP-AVCETLAVASASPMAAAAEGPQQSAEGSASGGGMQAAAPPSSQPHPQQ 345
Score = 33.1 bits (74), Expect = 0.21
Identities = 51/164 (31%), Positives = 53/164 (32%), Gaps = 35/164 (21%)
Query: 78 PAIAPGGSGGG---------GGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLR 128
PA GG GG G GA AG A A AA LA G R P
Sbjct: 92 PASIRGGGGGAEKATPLAPKGAAPGAVQPVAGAEA-----APAATLAALGGRRPGPPEEP 146
Query: 129 RRRLQR------------RRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPP 176
R L+ GG GG G G G GA + P PR R
Sbjct: 147 PRELESVPSKLGEPPPLGEGGGGGGEGGGAGGGSGEREGGAPQPPP----PRGWRG--KG 200
Query: 177 SVAHVARASAGLGARPVP-GGPAGPRESWARRTSSPPRGAAGGG 219
A S G GA P P AG R S G AGGG
Sbjct: 201 VRAQQRGGSGGEGASPSPSSSSAGKTPGTGSRNSG--SGVAGGG 242
Score = 28.1 bits (61), Expect = 6.6
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Query: 169 LARPPV---PPSVAHVARASAGLGARPVPGG----------PAGPRESWARRTSSPPRGA 215
+++PP+ P+ A + A+A AR P G PA PR+S R+T + R
Sbjct: 1 MSQPPIGGAAPATAAASPAAAATEARLHPEGSSRKQQRAQSPARPRDSSLRQTIAATRSP 60
Query: 216 AGGG 219
G G
Sbjct: 61 VGAG 64
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 48.9 bits (115), Expect = 4e-06
Identities = 57/178 (32%), Positives = 66/178 (37%), Gaps = 40/178 (22%)
Query: 57 GAAPATAESPDTPEE---PPEEPAPAIAP-----GGSGGGGGGCGAQHWAAGRRAQREQG 108
GA TA PD + P PAP + G G G G GA+ RRA+ Q
Sbjct: 731 GATTQTATLPDGQTDRARPWSPPAPGESRDRARGAGQPGPGSGSGAERAGPERRARDTQ- 789
Query: 109 AGAAVLADFGHVRAAPSGLRRRRL-QRRRGGRGGRGAGRA--RKPGPDRAGAERSLPAHR 165
+ RR +L RGGR AGR R+ G RAGA R
Sbjct: 790 ----------------TRTRRDKLTDSARGGRARLTAGRRVRRESGRRRAGATSQGAIRR 833
Query: 166 APRLARP-----PVPPSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGG 218
A AR P+P + SAG A P P R SW R S P R A G
Sbjct: 834 AASRARKGESRRPLPAN-------SAGRPALPSPAAARSARGSWGLRASRPSRAAPRG 884
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 48.1 bits (113), Expect = 6e-06
Identities = 70/240 (29%), Positives = 83/240 (34%), Gaps = 33/240 (13%)
Query: 5 RPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAE 64
RP + P + R ++ P R S LC A + A P A
Sbjct: 18 RPAARQVAPPGGPXSLARTHSRRHPDHAPPPGRPSCSRPLC------AGSSCLATPEPAR 71
Query: 65 SPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFG-HVRAA 123
+P E P P A PG GGGG G A+ E + D V AA
Sbjct: 72 APSIAEPGPGIPVAAAKPGVLPGGGGCTG---------ARTENPPLSPTRGDCRVPVPAA 122
Query: 124 PSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPV----PPSVA 179
P LR R R GG AGRA P D+A L AP+L P V PP +
Sbjct: 123 PISLRWR--SGREARPGGPQAGRAGDPKADQA---MHLQPAWAPKLQPPSVCRQQPPGNS 177
Query: 180 HVARASAGLGARP-VPGGPAGPRES-------WARRTSSPPRGAAGGGRPFLHPGGRGDP 231
S LG R P G R S R S+P R A + GRG P
Sbjct: 178 RARPHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSRVAVEDPWLEVSSSGRGGP 237
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 47.4 bits (111), Expect = 1e-05
Identities = 63/215 (29%), Positives = 80/215 (37%), Gaps = 41/215 (19%)
Query: 35 SSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGA 94
SS A+A PGL + G AP + P PP +P+ I+PG +
Sbjct: 1242 SSPAAAAPGL---PEVGVSLDDGLAPFSPSHP----APPSDPSHQISPGPT--------- 1285
Query: 95 QHWAAGR----RAQREQGAGAAVLADFGHVR---AAPSGLRRRRLQRRRGGRG----GRG 143
W R R +E A G R A+P R RL+ GG+G GR
Sbjct: 1286 --WDIKREHDVRKPKELSACGQKKQRLGEQRERSASPQRAARPRLEEAPGGQGRPEAGRP 1343
Query: 144 AGRARKPG--------PDRAGAERSLPAHRAPRLAR---PPVPPSVAHVARASAG-LGAR 191
A AR PG RAG + + A L R P P+ A +G L A
Sbjct: 1344 ASEARAPGLAAADAADAARAGGKEAPRAAAGSELCRREGPGAAPAFAGPGGGGSGALEAE 1403
Query: 192 PVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPG 226
G AGPR +P R AA P+ PG
Sbjct: 1404 GRAGARAGPRPGPRPPGGAPARKAAVAPGPWKVPG 1438
Score = 40.8 bits (94), Expect = 0.001
Identities = 37/103 (35%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 9 KSTEPCDELRPMV--TLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGA-APATAES 65
+S P RP + G + R RP+S A A PGL +AA AA G AP A
Sbjct: 1316 RSASPQRAARPRLEEAPGGQGRPEAGRPASEARA-PGLAAADAADAARAGGKEAPRAAAG 1374
Query: 66 PDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQG 108
+ APA A G GGGG G AG RA G
Sbjct: 1375 SELCRREGPGAAPAFA--GPGGGGSGALEAEGRAGARAGPRPG 1415
Score = 37.0 bits (84), Expect = 0.014
Identities = 49/192 (25%), Positives = 70/192 (36%), Gaps = 21/192 (10%)
Query: 11 TEPCDELRPMVTLGWRMRNSNSRPSSRASAGP-----GLCRTEAA----AAATRAGAAPA 61
++P ++ P T + + +P ++ G G R +A AA R AP
Sbjct: 1274 SDPSHQISPGPTWDIKREHDVRKPKELSACGQKKQRLGEQRERSASPQRAARPRLEEAPG 1333
Query: 62 TAESPDTPEEPPEEPAPAIAPGGSGGGG--GGCGAQHWAAGRRAQREQGAGAAVLADFGH 119
P+ E AP +A + GG A AAG R +G GAA
Sbjct: 1334 GQGRPEAGRPASEARAPGLAAADAADAARAGGKEAPRAAAGSELCRREGPGAA------P 1387
Query: 120 VRAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVA 179
A P G L+ GR G AG +PGP G + A AP + P +
Sbjct: 1388 AFAGPGGGGSGALEAE--GRAGARAG--PRPGPRPPGGAPARKAAVAPGPWKVPGSDKLP 1443
Query: 180 HVARASAGLGAR 191
V + A +R
Sbjct: 1444 SVLKPGASAASR 1455
>gi|82546824 forkhead box K1 [Homo sapiens]
Length = 733
Score = 47.4 bits (111), Expect = 1e-05
Identities = 37/114 (32%), Positives = 43/114 (37%), Gaps = 6/114 (5%)
Query: 38 ASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPG-----GSGGGGGGC 92
A P LC AAAA A PA A+ P P PP P P + PG GS GG G
Sbjct: 19 APCSPVLCAAAAAAAFPAAAPPPAPAQ-PQPPPGPPPPPPPPLPPGAIAGAGSSGGSSGV 77
Query: 93 GAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGR 146
AG A A+V G A G L R+ GR + +
Sbjct: 78 SGDSAVAGAAPALVAAAAASVRQSPGPALARLEGREFEFLMRQPSVTIGRNSSQ 131
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 47.0 bits (110), Expect = 1e-05
Identities = 55/172 (31%), Positives = 65/172 (37%), Gaps = 15/172 (8%)
Query: 73 PEEPAP---AIAPGGSGG-GGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAA----- 123
P EP P A APG GG G G + G GA G AA
Sbjct: 656 PGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGP 715
Query: 124 PSGLRRRRLQRRRGGRGGRGAG--RARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHV 181
P LQ G RGG G+ + K P GA+ +P PR P+ P
Sbjct: 716 PGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGAD-GVPGKDGPRGPTGPIGPPGPAG 774
Query: 182 ARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAG-GGRPFLH--PGGRGD 230
G G P G AGPR S R + P G AG G P + PGG+G+
Sbjct: 775 QPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGE 826
Score = 40.8 bits (94), Expect = 0.001
Identities = 49/174 (28%), Positives = 57/174 (32%), Gaps = 21/174 (12%)
Query: 59 APATAESPDTPEEP-PEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADF 117
+P +P P P P PA G G G GA A R A QG
Sbjct: 1039 SPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQG--------- 1089
Query: 118 GHVRAAPSGLRRRRLQRRRGG-RGGRG-AGRARKPGPDRAGAERSLPAHRAPRLARPPVP 175
P G + +R G +G RG G PG ++ P R PV
Sbjct: 1090 ------PRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVG 1143
Query: 176 PSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRG 229
PS G P P GP GPR + R S G G P PG G
Sbjct: 1144 PSGPP---GKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPG 1194
Score = 39.7 bits (91), Expect = 0.002
Identities = 55/208 (26%), Positives = 72/208 (34%), Gaps = 25/208 (12%)
Query: 34 PSSRASAGPGLCRTEAAAAATRAGAAPATAE-SPDTPEEPPEEPAPAIAPGGSGG-GGGG 91
P R S GP + E+ + GA + E P P+ P A PG G G G
Sbjct: 965 PGPRGSPGPQGVKGESG----KPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDG 1020
Query: 92 CGAQHWAAGRRAQREQGAGAAVLADFGHVR----AAPSGLRRRRLQRRRGGRGGRG-AGR 146
+ + G + R + GH P+G + G RG G AG
Sbjct: 1021 LPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAG--------KSGDRGESGPAGP 1072
Query: 147 ARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARP-VPG--GPAGPRES 203
A PGP R P + PR + A + G P PG GPAG + +
Sbjct: 1073 AGAPGP---AGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGA 1129
Query: 204 WARRTSSPPRGAAGGGRPFLHPGGRGDP 231
+ PRG G P G G P
Sbjct: 1130 IGSPGPAGPRGPVGPSGPPGKDGTSGHP 1157
Score = 39.3 bits (90), Expect = 0.003
Identities = 58/203 (28%), Positives = 67/203 (33%), Gaps = 21/203 (10%)
Query: 34 PSSRASAG-PGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGC 92
P R G PG + A P + P P P P PA PG G GG
Sbjct: 728 PGERGGLGSPGPKGDKGEPGGPGADGVPGK-DGPRGPTGPIGPPGPAGQPGDKGEGGAP- 785
Query: 93 GAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRR-GGRGGRGA-GRARKP 150
G A R + E+G P+G Q GG+G RGA G +
Sbjct: 786 GLPGIAGPRGSPGERGETGP---------PGPAGFPGAPGQNGEPGGKGERGAPGEKGEG 836
Query: 151 GPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPG--GPAGPRESWARRT 208
GP P P A PP P V + G GA PG G GP S
Sbjct: 837 GPPGVAGP---PGGSGP--AGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPG 891
Query: 209 SSPPRGAAGGGRPFLHPGGRGDP 231
P G+ G P G G P
Sbjct: 892 PPGPSGSPGKDGPPGPAGNTGAP 914
Score = 38.9 bits (89), Expect = 0.004
Identities = 50/189 (26%), Positives = 60/189 (31%), Gaps = 33/189 (17%)
Query: 69 PEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLR 128
P PP P AI P G G G G GR +R + G + P
Sbjct: 211 PSGPPGPPG-AIGPSGPAGKDGESGRP----GRPGERGLPGPPGIKGPAG-IPGFPGMKG 264
Query: 129 RRRLQRRRGGRGGRGA-------------------------GRARKPG-PDRAGAERSLP 162
R R G +G GA G +PG P AGA +
Sbjct: 265 HRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDG 324
Query: 163 AHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPF 222
A + PP PP A S G P G G + +R P+G AG P
Sbjct: 325 ARGSDGQPGPPGPPGTAGFP-GSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPP 383
Query: 223 LHPGGRGDP 231
PG G P
Sbjct: 384 GPPGINGSP 392
Score = 38.9 bits (89), Expect = 0.004
Identities = 56/220 (25%), Positives = 68/220 (30%), Gaps = 46/220 (20%)
Query: 34 PSSRASAG-------PGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPG--G 84
P + AG PGL A A R GA P E PP P A PG G
Sbjct: 671 PGGKGDAGAPGERGPPGL----AGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQG 726
Query: 85 SGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRG- 143
G GG G + G + + + P G + + G RG G
Sbjct: 727 MPGERGGLG----SPGPKGDKGE----------------PGGPGADGVPGKDGPRGPTGP 766
Query: 144 ---AGRARKPGPDRAGAERSLPAHRAPR-------LARPPVPPSVAHVARASAGLGARPV 193
G A +PG G LP PR PP P + G +
Sbjct: 767 IGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGE 826
Query: 194 PGGPAGPRESWARRTSSPPRGAAGGGRPFLH--PGGRGDP 231
G P E + PP G+ G P G RG P
Sbjct: 827 RGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSP 866
Score = 38.1 bits (87), Expect = 0.006
Identities = 58/213 (27%), Positives = 72/213 (33%), Gaps = 24/213 (11%)
Query: 30 SNSRPSSRASAG-PGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIA--PGGSG 86
SN P +G PG A T A +P + +P E+ +P PG G
Sbjct: 886 SNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPG 945
Query: 87 --GGGGGCGAQHWAA--GRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGR 142
G G GA+ A G R V + G A L RG G +
Sbjct: 946 PLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGA-------NGLSGERGPPGPQ 998
Query: 143 G----AGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPA 198
G AG A +PG D LP + + + A + G P P GP
Sbjct: 999 GLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPG---HPGPPGPV 1055
Query: 199 GPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
GP R S P G AG P G RG P
Sbjct: 1056 GPAGKSGDRGESGPAGPAGAPGP---AGSRGAP 1085
Score = 37.0 bits (84), Expect = 0.014
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 9/97 (9%)
Query: 137 GGRGGRG-AGRARKPGPDRAGAERSLPAHRAPRLAR-PPVPPSVAHVARASAGLGARPVP 194
G G +G G A PG + A +R P + A+ PP PP + +G +P
Sbjct: 345 GSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIP 404
Query: 195 GGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
G P PP A G P L GG G+P
Sbjct: 405 GAPG------LMGARGPPGPAGANGAPGLR-GGAGEP 434
Score = 33.9 bits (76), Expect = 0.12
Identities = 58/222 (26%), Positives = 68/222 (30%), Gaps = 29/222 (13%)
Query: 31 NSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGG- 89
N P + GP R PA A EP A G G G
Sbjct: 389 NGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGE 448
Query: 90 -GGCGAQHWAAGRRAQREQGA----GAAVLADFGHVRAAPSGLRR----RRLQRRRGGRG 140
G G + + G+ GA L R AP G R + +G G
Sbjct: 449 RGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAP-GFRGPAGPNGIPGEKGPAG 507
Query: 141 GRGA-------GRARKPGPDRAGAE---RSLPAHRA-PRLARPPVPPSVAHVARASAGLG 189
RGA G A +PG D R +P P P PP S G
Sbjct: 508 ERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPG-------SQGES 560
Query: 190 ARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
RP P GP+GPR P+G G GG G P
Sbjct: 561 GRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGP 602
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 47.0 bits (110), Expect = 1e-05
Identities = 59/222 (26%), Positives = 71/222 (31%), Gaps = 47/222 (21%)
Query: 36 SRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQ 95
S+ + GP R E+ A AP A P P PP P P + G G G
Sbjct: 984 SKGAPGPAGARGESGLAG-----APGPA-GPPGPPGPPGPPGPGLPAGFDDMEGSG--GP 1035
Query: 96 HWAAGRRAQREQGA----------------GAAVLADFGHVRAAPSGLRRRRLQRRRGGR 139
W+ R A QG GA V P R + +G +
Sbjct: 1036 FWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPK 1095
Query: 140 GGRGA-GRARKPGPDRAGAERSLPAHRAPRLARPPVPPS-VAHVARASA----------- 186
G RG+ G PG D G P L PP PP V +V+
Sbjct: 1096 GDRGSRGEKGDPGKDGVGQ---------PGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR 1146
Query: 187 -GLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGG 227
G P P GP G S R S P+G G P G
Sbjct: 1147 PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDG 1188
Score = 33.1 bits (74), Expect = 0.21
Identities = 35/97 (36%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 137 GGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGG 196
G +G +GA PGP A E L AP A PP PP G P PG
Sbjct: 980 GHKGSKGA-----PGPAGARGESGLAG--APGPAGPPGPP----------GPPGPPGPGL 1022
Query: 197 PAG--PRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
PAG E S R A G P PG +GDP
Sbjct: 1023 PAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDP 1059
Score = 32.7 bits (73), Expect = 0.27
Identities = 48/169 (28%), Positives = 61/169 (36%), Gaps = 25/169 (14%)
Query: 72 PPEEPAPAIAPGGSGGGGGG--CGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRR 129
PP P +A G S Q A AQ G+ + D G VR ++
Sbjct: 692 PPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWD-GSVRTPGGRVKE 750
Query: 130 RRLQRRRGGRGGRGA-GRARKPGPDRAGAERSLPAHRAPRLARPP-VPPSVAHVARASAG 187
L+ ++G G G GRA PG +P L PP +P V+ + A
Sbjct: 751 GGLKGQKGEPGVPGPPGRAGPPG--------------SPCLPGPPGLPCPVSPLGPAGPA 796
Query: 188 LGARPVPGGPAGP--RESWARRTSSP----PRGAAGGGRPFLHPGGRGD 230
L P P GP GP R+ R P G G P PG GD
Sbjct: 797 LQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGD 845
Score = 30.8 bits (68), Expect = 1.0
Identities = 29/91 (31%), Positives = 34/91 (37%), Gaps = 22/91 (24%)
Query: 148 RKPGPDRAGAERSL-----PAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRE 202
R+ P R G + SL P H+ + A P AR +GL P P GP GP
Sbjct: 960 REGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAG------ARGESGLAGAPGPAGPPGP-- 1011
Query: 203 SWARRTSSPPRGAAGGGRP--FLHPGGRGDP 231
P G G G P F G G P
Sbjct: 1012 -------PGPPGPPGPGLPAGFDDMEGSGGP 1035
Score = 29.3 bits (64), Expect = 3.0
Identities = 47/198 (23%), Positives = 63/198 (31%), Gaps = 29/198 (14%)
Query: 22 TLGWRMRNSNSRPSSRASAGPG---LCRTEAAAAATRAGAAPATA-ESPDTPEEPPEEPA 77
+LG+ MR P GP + + A ++R G + P P+ E
Sbjct: 1245 SLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVG 1304
Query: 78 PAIAPG--------------GSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAA 123
P PG G G G AG++ +R + G FG
Sbjct: 1305 PPGPPGQFPFDFLQLEAEMKGEKGDRGD-------AGQKGERGEPGGGGF---FGSSLPG 1354
Query: 124 PSGLRRRR-LQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVA 182
P G R G +G G+ PGP P PP PPS
Sbjct: 1355 PPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPH 1414
Query: 183 RASAGLGARPVPGGPAGP 200
R + + P P GP GP
Sbjct: 1415 RQTISVPGPPGPPGPPGP 1432
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 47.0 bits (110), Expect = 1e-05
Identities = 59/222 (26%), Positives = 71/222 (31%), Gaps = 47/222 (21%)
Query: 36 SRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQ 95
S+ + GP R E+ A AP A P P PP P P + G G G
Sbjct: 569 SKGAPGPAGARGESGLAG-----APGPA-GPPGPPGPPGPPGPGLPAGFDDMEGSG--GP 620
Query: 96 HWAAGRRAQREQGA----------------GAAVLADFGHVRAAPSGLRRRRLQRRRGGR 139
W+ R A QG GA V P R + +G +
Sbjct: 621 FWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPK 680
Query: 140 GGRGA-GRARKPGPDRAGAERSLPAHRAPRLARPPVPPS-VAHVARASA----------- 186
G RG+ G PG D G P L PP PP V +V+
Sbjct: 681 GDRGSRGEKGDPGKDGVGQ---------PGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR 731
Query: 187 -GLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGG 227
G P P GP G S R S P+G G P G
Sbjct: 732 PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDG 773
Score = 33.1 bits (74), Expect = 0.21
Identities = 35/97 (36%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 137 GGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGG 196
G +G +GA PGP A E L AP A PP PP G P PG
Sbjct: 565 GHKGSKGA-----PGPAGARGESGLAG--APGPAGPPGPP----------GPPGPPGPGL 607
Query: 197 PAG--PRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
PAG E S R A G P PG +GDP
Sbjct: 608 PAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDP 644
Score = 32.7 bits (73), Expect = 0.27
Identities = 48/169 (28%), Positives = 61/169 (36%), Gaps = 25/169 (14%)
Query: 72 PPEEPAPAIAPGGSGGGGGG--CGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRR 129
PP P +A G S Q A AQ G+ + D G VR ++
Sbjct: 277 PPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWD-GSVRTPGGRVKE 335
Query: 130 RRLQRRRGGRGGRGA-GRARKPGPDRAGAERSLPAHRAPRLARPP-VPPSVAHVARASAG 187
L+ ++G G G GRA PG +P L PP +P V+ + A
Sbjct: 336 GGLKGQKGEPGVPGPPGRAGPPG--------------SPCLPGPPGLPCPVSPLGPAGPA 381
Query: 188 LGARPVPGGPAGP--RESWARRTSSP----PRGAAGGGRPFLHPGGRGD 230
L P P GP GP R+ R P G G P PG GD
Sbjct: 382 LQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGD 430
Score = 30.8 bits (68), Expect = 1.0
Identities = 29/91 (31%), Positives = 34/91 (37%), Gaps = 22/91 (24%)
Query: 148 RKPGPDRAGAERSL-----PAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRE 202
R+ P R G + SL P H+ + A P AR +GL P P GP GP
Sbjct: 545 REGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAG------ARGESGLAGAPGPAGPPGP-- 596
Query: 203 SWARRTSSPPRGAAGGGRP--FLHPGGRGDP 231
P G G G P F G G P
Sbjct: 597 -------PGPPGPPGPGLPAGFDDMEGSGGP 620
Score = 29.3 bits (64), Expect = 3.0
Identities = 47/198 (23%), Positives = 63/198 (31%), Gaps = 29/198 (14%)
Query: 22 TLGWRMRNSNSRPSSRASAGPG---LCRTEAAAAATRAGAAPATA-ESPDTPEEPPEEPA 77
+LG+ MR P GP + + A ++R G + P P+ E
Sbjct: 830 SLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVG 889
Query: 78 PAIAPG--------------GSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAA 123
P PG G G G AG++ +R + G FG
Sbjct: 890 PPGPPGQFPFDFLQLEAEMKGEKGDRGD-------AGQKGERGEPGGGGF---FGSSLPG 939
Query: 124 PSGLRRRR-LQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVA 182
P G R G +G G+ PGP P PP PPS
Sbjct: 940 PPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPH 999
Query: 183 RASAGLGARPVPGGPAGP 200
R + + P P GP GP
Sbjct: 1000 RQTISVPGPPGPPGPPGP 1017
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 47.0 bits (110), Expect = 1e-05
Identities = 59/222 (26%), Positives = 71/222 (31%), Gaps = 47/222 (21%)
Query: 36 SRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQ 95
S+ + GP R E+ A AP A P P PP P P + G G G
Sbjct: 749 SKGAPGPAGARGESGLAG-----APGPA-GPPGPPGPPGPPGPGLPAGFDDMEGSG--GP 800
Query: 96 HWAAGRRAQREQGA----------------GAAVLADFGHVRAAPSGLRRRRLQRRRGGR 139
W+ R A QG GA V P R + +G +
Sbjct: 801 FWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPK 860
Query: 140 GGRGA-GRARKPGPDRAGAERSLPAHRAPRLARPPVPPS-VAHVARASA----------- 186
G RG+ G PG D G P L PP PP V +V+
Sbjct: 861 GDRGSRGEKGDPGKDGVGQ---------PGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR 911
Query: 187 -GLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGG 227
G P P GP G S R S P+G G P G
Sbjct: 912 PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDG 953
Score = 33.1 bits (74), Expect = 0.21
Identities = 35/97 (36%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 137 GGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGG 196
G +G +GA PGP A E L AP A PP PP G P PG
Sbjct: 745 GHKGSKGA-----PGPAGARGESGLAG--APGPAGPPGPP----------GPPGPPGPGL 787
Query: 197 PAG--PRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
PAG E S R A G P PG +GDP
Sbjct: 788 PAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDP 824
Score = 32.7 bits (73), Expect = 0.27
Identities = 48/169 (28%), Positives = 61/169 (36%), Gaps = 25/169 (14%)
Query: 72 PPEEPAPAIAPGGSGGGGGG--CGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRR 129
PP P +A G S Q A AQ G+ + D G VR ++
Sbjct: 457 PPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWD-GSVRTPGGRVKE 515
Query: 130 RRLQRRRGGRGGRGA-GRARKPGPDRAGAERSLPAHRAPRLARPP-VPPSVAHVARASAG 187
L+ ++G G G GRA PG +P L PP +P V+ + A
Sbjct: 516 GGLKGQKGEPGVPGPPGRAGPPG--------------SPCLPGPPGLPCPVSPLGPAGPA 561
Query: 188 LGARPVPGGPAGP--RESWARRTSSP----PRGAAGGGRPFLHPGGRGD 230
L P P GP GP R+ R P G G P PG GD
Sbjct: 562 LQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGD 610
Score = 30.8 bits (68), Expect = 1.0
Identities = 29/91 (31%), Positives = 34/91 (37%), Gaps = 22/91 (24%)
Query: 148 RKPGPDRAGAERSL-----PAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRE 202
R+ P R G + SL P H+ + A P AR +GL P P GP GP
Sbjct: 725 REGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAG------ARGESGLAGAPGPAGPPGP-- 776
Query: 203 SWARRTSSPPRGAAGGGRP--FLHPGGRGDP 231
P G G G P F G G P
Sbjct: 777 -------PGPPGPPGPGLPAGFDDMEGSGGP 800
Score = 29.3 bits (64), Expect = 3.0
Identities = 47/198 (23%), Positives = 63/198 (31%), Gaps = 29/198 (14%)
Query: 22 TLGWRMRNSNSRPSSRASAGPG---LCRTEAAAAATRAGAAPATA-ESPDTPEEPPEEPA 77
+LG+ MR P GP + + A ++R G + P P+ E
Sbjct: 1010 SLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVG 1069
Query: 78 PAIAPG--------------GSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAA 123
P PG G G G AG++ +R + G FG
Sbjct: 1070 PPGPPGQFPFDFLQLEAEMKGEKGDRGD-------AGQKGERGEPGGGGF---FGSSLPG 1119
Query: 124 PSGLRRRR-LQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVA 182
P G R G +G G+ PGP P PP PPS
Sbjct: 1120 PPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPH 1179
Query: 183 RASAGLGARPVPGGPAGP 200
R + + P P GP GP
Sbjct: 1180 RQTISVPGPPGPPGPPGP 1197
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 47.0 bits (110), Expect = 1e-05
Identities = 47/164 (28%), Positives = 61/164 (37%), Gaps = 7/164 (4%)
Query: 41 GPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAG 100
GP A GAA AE P+ E E P A A +GGGG G + A G
Sbjct: 16 GPPEVPAPLAERPGEPGAAGGEAEGPEGSEGAEEAPRGAAAVKEAGGGGPDRGPEAEARG 75
Query: 101 RR---AQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRG--AGRARKPGPDRA 155
R + E GA A+ SG ++++ GRG +G G A++ D A
Sbjct: 76 TRGAHGETEAEEGAPEGAEVPQGGEETSG--AQQVEGASPGRGAQGEPRGEAQREPEDSA 133
Query: 156 GAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAG 199
ER A + P + A LG GPAG
Sbjct: 134 APERQEEAEQRPEVPEGSASGEAGDSVDAEGPLGDNIEAEGPAG 177
>gi|239754474 PREDICTED: similar to mucin [Homo sapiens]
Length = 417
Score = 46.6 bits (109), Expect = 2e-05
Identities = 51/201 (25%), Positives = 74/201 (36%), Gaps = 23/201 (11%)
Query: 28 RNSNSRPSSRASAGPGLCRTEAAAAAT----------RAGAAPA-TAESPDTPEEPPEEP 76
+ +P R + G G R ++ + A AAPA T+ T + P++P
Sbjct: 157 KRKRQQPQRRPAGGTGQRRGSGSSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQP 216
Query: 77 APAIAPGGSGGGGGGCGAQHWAAGRRAQ--REQGAGAAVLADFGHVRAAPSGLRRRRLQR 134
P G G G + A +RAQ E+ A A GH + ++ QR
Sbjct: 217 Q--CRPAGGTGQRRGSRSSPSADQQRAQDREEEAAAAPAPTSRGH---RTEKRKPQQPQR 271
Query: 135 RRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVP 194
R G G+ G P D+ GA+ R A P P S H L + P
Sbjct: 272 RPAGGTGQRRGSGYSPSADQQGAQ-----DREEEAAAAPAPTSSGHRTEKRKRLQLQCQP 326
Query: 195 GGPAGPRESWARRTSSPPRGA 215
G G R +S+ +GA
Sbjct: 327 AGGTGQRRGSGCSSSANQQGA 347
Score = 43.5 bits (101), Expect = 2e-04
Identities = 54/208 (25%), Positives = 73/208 (35%), Gaps = 22/208 (10%)
Query: 5 RPMLKSTEPCDELRPMVTLGWRMRNSNSRPSS----------RASAGPGLCRTEAAAAAT 54
+P+ +P + +P G R R S S PS+ A+A P + A
Sbjct: 31 KPLRPQQQP--QCQPAGGTGQR-RGSGSSPSADQQGAQDREEEAAAAPAADQQRAQDREE 87
Query: 55 RAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAA-V 113
A AAP S E+ GG+G G + R RE+ A AA V
Sbjct: 88 EAAAAPVPTSSGHRTEKRKRLQLQCQPAGGTGQRRGSRSSPSADQQRAQDREEEAAAAPV 147
Query: 114 LADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPP 173
GH +R++ QRR G G+ G P D+ GA+ R A P
Sbjct: 148 PTSRGH---RTEKRKRQQPQRRPAGGTGQRRGSGSSPSADQQGAQ-----DREEEAAAAP 199
Query: 174 VPPSVAHVARASAGLGARPVPGGPAGPR 201
P S H + P G G R
Sbjct: 200 APTSRGHRTEKRKPQQPQCRPAGGTGQR 227
Score = 38.1 bits (87), Expect = 0.006
Identities = 41/152 (26%), Positives = 57/152 (37%), Gaps = 11/152 (7%)
Query: 30 SNSRPSSRASAGPGLCRTEAAAAATRAGAAPA-TAESPDTPEEPPEEPAPAIAPGGSGGG 88
+ R SR+S P + A A AAPA T+ T + P++P A G
Sbjct: 224 TGQRRGSRSS--PSADQQRAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRRPAGGTGQRR 281
Query: 89 GGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRAR 148
G G G + + E+ A A GH +R+RLQ + GG G R
Sbjct: 282 GSGYSPSADQQGAQDREEEAAAAPAPTSSGHRTE-----KRKRLQLQCQPAGGTG---QR 333
Query: 149 KPGPDRAGAERSLPAHRAPRLARPPVPPSVAH 180
+ + A + R A PVP S H
Sbjct: 334 RGSGCSSSANQQGAQDREEEAAAAPVPTSSGH 365
>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 650
Score = 46.6 bits (109), Expect = 2e-05
Identities = 45/162 (27%), Positives = 59/162 (36%), Gaps = 16/162 (9%)
Query: 80 IAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAA---PSGLRRRRLQRRR 136
+ GG GGG G GA + R ++R + +D A P RR R
Sbjct: 153 VGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRA 212
Query: 137 GG---RGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPV 193
GG RG R A ++P R + S A RP P SVA + A + P
Sbjct: 213 GGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPC 272
Query: 194 PGGPAGPRESWARRTSSPPRGAAGGG----------RPFLHP 225
P G + +P G+AG G RPF P
Sbjct: 273 PHRAGGADGVGSHGARAPGEGSAGSGTERVELGPHVRPFFLP 314
Score = 36.6 bits (83), Expect = 0.019
Identities = 53/175 (30%), Positives = 65/175 (37%), Gaps = 44/175 (25%)
Query: 84 GSGGGGGGCGAQHWAAGRR--AQREQGAGAAVLADFG-HVRAAPS-GLRR---------- 129
G+ GG G + W +GRR ++R +G G G +APS G+RR
Sbjct: 62 GNSGGRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAV 121
Query: 130 ------------RRLQRRRGGRG-------GRGAGRARKPGPDRAGAERSLPAHRAPRL- 169
+L R RG G GAG G AGA SL + R+
Sbjct: 122 TWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAG-GEGGGEGAAGAASSLSERSSERVE 180
Query: 170 ARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRG---AAGGGRP 221
+ S VA GARP P GP R W R PRG A G RP
Sbjct: 181 LQSDTDDSDTRVAE-----GARPRP-GPTSSRRPWGRAGGLRPRGKRPARGKKRP 229
>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
sapiens]
Length = 725
Score = 46.6 bits (109), Expect = 2e-05
Identities = 45/162 (27%), Positives = 59/162 (36%), Gaps = 16/162 (9%)
Query: 80 IAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAA---PSGLRRRRLQRRR 136
+ GG GGG G GA + R ++R + +D A P RR R
Sbjct: 153 VGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRA 212
Query: 137 GG---RGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPV 193
GG RG R A ++P R + S A RP P SVA + A + P
Sbjct: 213 GGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPC 272
Query: 194 PGGPAGPRESWARRTSSPPRGAAGGG----------RPFLHP 225
P G + +P G+AG G RPF P
Sbjct: 273 PHRAGGADGVGSHGARAPGEGSAGSGTERVELGPHVRPFFLP 314
Score = 36.6 bits (83), Expect = 0.019
Identities = 53/175 (30%), Positives = 65/175 (37%), Gaps = 44/175 (25%)
Query: 84 GSGGGGGGCGAQHWAAGRR--AQREQGAGAAVLADFG-HVRAAPS-GLRR---------- 129
G+ GG G + W +GRR ++R +G G G +APS G+RR
Sbjct: 62 GNSGGRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAV 121
Query: 130 ------------RRLQRRRGGRG-------GRGAGRARKPGPDRAGAERSLPAHRAPRL- 169
+L R RG G GAG G AGA SL + R+
Sbjct: 122 TWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAG-GEGGGEGAAGAASSLSERSSERVE 180
Query: 170 ARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRG---AAGGGRP 221
+ S VA GARP P GP R W R PRG A G RP
Sbjct: 181 LQSDTDDSDTRVAE-----GARPRP-GPTSSRRPWGRAGGLRPRGKRPARGKKRP 229
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 46.6 bits (109), Expect = 2e-05
Identities = 62/230 (26%), Positives = 76/230 (33%), Gaps = 45/230 (19%)
Query: 35 SSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAP------------ 82
SSRAS E APA + P+ P P E PAP+ P
Sbjct: 547 SSRASFSSFDTTDEGPVYCVPHEEAPAESRDPEVPTVPAEAPAPSPVPLTTPASAEEAIP 606
Query: 83 ----------GGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRR-- 130
S G GG A R R + A + G + +PS RR+
Sbjct: 607 LPASSDSERSASSVEGPGG------ALYARVARREARPARARGEIGGLSLSPSPERRKPP 660
Query: 131 --------RLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVA 182
++ G AGRA P P + A S P+ R R P S AH
Sbjct: 661 PPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPS-PSKR----KRTPSDKS-AHTV 714
Query: 183 RASAGLGARPVPGGPAGPRESWARRTSSPPRG-AAGGGRPFLHPGGRGDP 231
+ P P P P E+ A SPPR A RP G R P
Sbjct: 715 EHGSPRTRDPTPRPPGLPEEATALAAPSPPRARARAAPRPLGAHGRRRSP 764
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 46.6 bits (109), Expect = 2e-05
Identities = 62/230 (26%), Positives = 76/230 (33%), Gaps = 45/230 (19%)
Query: 35 SSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAP------------ 82
SSRAS E APA + P+ P P E PAP+ P
Sbjct: 542 SSRASFSSFDTTDEGPVYCVPHEEAPAESRDPEVPTVPAEAPAPSPVPLTTPASAEEAIP 601
Query: 83 ----------GGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRR-- 130
S G GG A R R + A + G + +PS RR+
Sbjct: 602 LPASSDSERSASSVEGPGG------ALYARVARREARPARARGEIGGLSLSPSPERRKPP 655
Query: 131 --------RLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVA 182
++ G AGRA P P + A S P+ R R P S AH
Sbjct: 656 PPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPS-PSKR----KRTPSDKS-AHTV 709
Query: 183 RASAGLGARPVPGGPAGPRESWARRTSSPPRG-AAGGGRPFLHPGGRGDP 231
+ P P P P E+ A SPPR A RP G R P
Sbjct: 710 EHGSPRTRDPTPRPPGLPEEATALAAPSPPRARARAAPRPLGAHGRRRSP 759
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 46.2 bits (108), Expect = 2e-05
Identities = 61/208 (29%), Positives = 75/208 (36%), Gaps = 22/208 (10%)
Query: 34 PSSRASAG-PGLCRTEAAAAATRAGAAPATAE-SPDTPEEPPEEPAPAIAPGGSGG-GGG 90
P R G PGL + + GA A+ + P P PP PA PG G G
Sbjct: 986 PGQRGERGFPGL--PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGAD 1043
Query: 91 GCGAQHWAAGRRAQR-EQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARK 149
G + AAG + R E GA A A P+G G +G RG A+
Sbjct: 1044 GPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG--------PTGKQGDRGEAGAQG 1095
Query: 150 P-GPDRAGAERSLPAHRAPR-----LARPPVPPSVAHVARASAGLGARPVPGGPAGPRES 203
P GP R + + PR P H R GL P P GP+G + +
Sbjct: 1096 PMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGH--RGFTGLQGLPGPPGPSGDQGA 1153
Query: 204 WARRTSSPPRGAAGGGRPFLHPGGRGDP 231
S PRG G P G G P
Sbjct: 1154 SGPAGPSGPRGPPGPVGPSGKDGANGIP 1181
Score = 38.1 bits (87), Expect = 0.006
Identities = 51/210 (24%), Positives = 65/210 (30%), Gaps = 9/210 (4%)
Query: 27 MRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSG 86
++ + P S GP R A A A D P P P + P G
Sbjct: 307 VKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGP-VGPAGGP 365
Query: 87 GGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRR----LQRRRGGRGGR 142
G G GA+ A A+ +GA P+G + +G G
Sbjct: 366 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAP 425
Query: 143 G-AGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPR 201
G AG PGP + P+ P +A + G P P GP G
Sbjct: 426 GIAGAPGFPGPRGPPGPQGATGPLGPK--GQTGEPGIAGF-KGEQGPKGEPGPAGPQGAP 482
Query: 202 ESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
RG GG P PG RG P
Sbjct: 483 GPAGEEGKRGARGEPGGVGPIGPPGERGAP 512
Score = 37.4 bits (85), Expect = 0.011
Identities = 55/221 (24%), Positives = 70/221 (31%), Gaps = 19/221 (8%)
Query: 27 MRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEE---------PA 77
+R + +AGP A + P+ + P PP E P
Sbjct: 628 LRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPG 687
Query: 78 PAIAPG--GSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRR---- 131
A APG G G G G + + Q +G D + P+G +
Sbjct: 688 EAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPG 747
Query: 132 LQRRRGGRGGRG-AGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGA 190
LQ G RG G AG G P R P+ P A G
Sbjct: 748 LQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVG 807
Query: 191 RPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
P P G AG R + R + P G AG P PG G P
Sbjct: 808 PPGPAGSAGARGAPGERGETGPPGPAGFAGP---PGADGQP 845
Score = 35.8 bits (81), Expect = 0.032
Identities = 55/203 (27%), Positives = 61/203 (30%), Gaps = 32/203 (15%)
Query: 42 PGLCRTEAAAAA-----TRAGAAPATAESPDTPEEPPEEPAPAIAPGGSG-GGGGGCGAQ 95
PGL AA A GA + P P P P PA APG G G G +
Sbjct: 173 PGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGE 232
Query: 96 HWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGA-------GRAR 148
+G R D G P R +G RG G G
Sbjct: 233 PGVSGPMGPRGPPGPPGKPGDDGEA-GKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRG 291
Query: 149 KPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRT 208
PG D A E P + S G P GP GPR R
Sbjct: 292 YPGLDGAKGEAGAPGVKG---------------ESGSPGENGSP---GPMGPRGLPGERG 333
Query: 209 SSPPRGAAGGGRPFLHPGGRGDP 231
+ P GAAG PG G P
Sbjct: 334 RTGPAGAAGARGNDGQPGPAGPP 356
Score = 35.0 bits (79), Expect = 0.054
Identities = 48/179 (26%), Positives = 57/179 (31%), Gaps = 14/179 (7%)
Query: 56 AGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLA 115
AG+A A + E P PA P G+ G G G Q G Q+
Sbjct: 812 AGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQ----GEAGQKGDAGAPGPQG 867
Query: 116 DFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVP 175
G AP + +G RG +G A P AG ++ P PP P
Sbjct: 868 PSG----APGPQGPTGVTGPKGARGAQGPPGA-TGFPGAAGRVGPPGSNGNPGPPGPPGP 922
Query: 176 -----PSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRG 229
P A G P GPAGP P GA G P G RG
Sbjct: 923 SGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 981
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 46.2 bits (108), Expect = 2e-05
Identities = 61/208 (29%), Positives = 75/208 (36%), Gaps = 22/208 (10%)
Query: 34 PSSRASAG-PGLCRTEAAAAATRAGAAPATAE-SPDTPEEPPEEPAPAIAPGGSGG-GGG 90
P R G PGL + + GA A+ + P P PP PA PG G G
Sbjct: 917 PGQRGERGFPGL--PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGAD 974
Query: 91 GCGAQHWAAGRRAQR-EQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARK 149
G + AAG + R E GA A A P+G G +G RG A+
Sbjct: 975 GPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG--------PTGKQGDRGEAGAQG 1026
Query: 150 P-GPDRAGAERSLPAHRAPR-----LARPPVPPSVAHVARASAGLGARPVPGGPAGPRES 203
P GP R + + PR P H R GL P P GP+G + +
Sbjct: 1027 PMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGH--RGFTGLQGLPGPPGPSGDQGA 1084
Query: 204 WARRTSSPPRGAAGGGRPFLHPGGRGDP 231
S PRG G P G G P
Sbjct: 1085 SGPAGPSGPRGPPGPVGPSGKDGANGIP 1112
Score = 38.1 bits (87), Expect = 0.006
Identities = 51/210 (24%), Positives = 65/210 (30%), Gaps = 9/210 (4%)
Query: 27 MRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSG 86
++ + P S GP R A A A D P P P + P G
Sbjct: 238 VKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGP-VGPAGGP 296
Query: 87 GGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRR----LQRRRGGRGGR 142
G G GA+ A A+ +GA P+G + +G G
Sbjct: 297 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAP 356
Query: 143 G-AGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPR 201
G AG PGP + P+ P +A + G P P GP G
Sbjct: 357 GIAGAPGFPGPRGPPGPQGATGPLGPK--GQTGEPGIAGF-KGEQGPKGEPGPAGPQGAP 413
Query: 202 ESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
RG GG P PG RG P
Sbjct: 414 GPAGEEGKRGARGEPGGVGPIGPPGERGAP 443
Score = 37.4 bits (85), Expect = 0.011
Identities = 55/221 (24%), Positives = 70/221 (31%), Gaps = 19/221 (8%)
Query: 27 MRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEE---------PA 77
+R + +AGP A + P+ + P PP E P
Sbjct: 559 LRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPG 618
Query: 78 PAIAPG--GSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRR---- 131
A APG G G G G + + Q +G D + P+G +
Sbjct: 619 EAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPG 678
Query: 132 LQRRRGGRGGRG-AGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGA 190
LQ G RG G AG G P R P+ P A G
Sbjct: 679 LQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVG 738
Query: 191 RPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
P P G AG R + R + P G AG P PG G P
Sbjct: 739 PPGPAGSAGARGAPGERGETGPPGPAGFAGP---PGADGQP 776
Score = 35.8 bits (81), Expect = 0.032
Identities = 55/203 (27%), Positives = 61/203 (30%), Gaps = 32/203 (15%)
Query: 42 PGLCRTEAAAAA-----TRAGAAPATAESPDTPEEPPEEPAPAIAPGGSG-GGGGGCGAQ 95
PGL AA A GA + P P P P PA APG G G G +
Sbjct: 104 PGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGE 163
Query: 96 HWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGA-------GRAR 148
+G R D G P R +G RG G G
Sbjct: 164 PGVSGPMGPRGPPGPPGKPGDDGEA-GKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRG 222
Query: 149 KPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRT 208
PG D A E P + S G P GP GPR R
Sbjct: 223 YPGLDGAKGEAGAPGVKG---------------ESGSPGENGSP---GPMGPRGLPGERG 264
Query: 209 SSPPRGAAGGGRPFLHPGGRGDP 231
+ P GAAG PG G P
Sbjct: 265 RTGPAGAAGARGNDGQPGPAGPP 287
Score = 35.0 bits (79), Expect = 0.054
Identities = 48/179 (26%), Positives = 57/179 (31%), Gaps = 14/179 (7%)
Query: 56 AGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLA 115
AG+A A + E P PA P G+ G G G Q G Q+
Sbjct: 743 AGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQ----GEAGQKGDAGAPGPQG 798
Query: 116 DFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVP 175
G AP + +G RG +G A P AG ++ P PP P
Sbjct: 799 PSG----APGPQGPTGVTGPKGARGAQGPPGA-TGFPGAAGRVGPPGSNGNPGPPGPPGP 853
Query: 176 -----PSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRG 229
P A G P GPAGP P GA G P G RG
Sbjct: 854 SGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 912
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 45.8 bits (107), Expect = 3e-05
Identities = 35/99 (35%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 131 RLQRRRGGRGGRGAGRARKPG-PDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLG 189
R R G G G+G +P P RA A RS P+ R PR + V ARA AG
Sbjct: 278 RAPRTSAGLAGVGSGAPGEPAEPGRARAPRSAPSSREPRQTKR----RVGSRARAGAGAV 333
Query: 190 ARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGR 228
P P G R SW P G A P P R
Sbjct: 334 TGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPR 372
Score = 40.4 bits (93), Expect = 0.001
Identities = 60/208 (28%), Positives = 76/208 (36%), Gaps = 33/208 (15%)
Query: 16 ELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEE 75
EL +T G R ++ + S + G C + A P A+ P P P+
Sbjct: 218 ELLFAITSGERAASAPRQESHNFAKG---CAEFYGSGARAQPGGPCWAQGP--PGRLPDP 272
Query: 76 -PAPAIAPGGSGG-GGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQ 133
P P AP S G G G GA A E G A R+APS R+ +
Sbjct: 273 IPLPTRAPRTSAGLAGVGSGAPGEPA------EPGRARAP-------RSAPSSREPRQTK 319
Query: 134 RRRGGRGGRGAGRARKPGPDRA-GAERSLPAHR---APRLARPPVPPSVAHVARASAGLG 189
RR G R GAG P P A GA S P+ R + AR P S H R +
Sbjct: 320 RRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPA---- 375
Query: 190 ARPVPGGPAGPRESWARRTSSPPRGAAG 217
G P + RR+ P G
Sbjct: 376 -----GSPPALADREGRRSLVPQTSIQG 398
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 45.8 bits (107), Expect = 3e-05
Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 133 QRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARP 192
+R R GG G+G+A++PGP R G+ R P + P A P PP+ A +G G
Sbjct: 14 ERARAPSGG-GSGQAQRPGPGR-GSWRRPPRRQRPGPAAPS-PPARGAAAWGRSGGGPAA 70
Query: 193 VPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGR 228
GG G RR + P G GGG PGGR
Sbjct: 71 QSGGDGG---GLPRRAGAEP-GGRGGGSGGTMPGGR 102
Score = 35.0 bits (79), Expect = 0.054
Identities = 28/79 (35%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 25 WRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGG 84
WR RP A + P AAA R+G PA D P A PGG
Sbjct: 37 WRRPPRRQRPGPAAPSPPA----RGAAAWGRSGGGPAAQSGGDGGGLPRRAGAE---PGG 89
Query: 85 SGGGGGGCGAQHWAAGRRA 103
GGG GG GRRA
Sbjct: 90 RGGGSGGT----MPGGRRA 104
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,532,077
Number of Sequences: 37866
Number of extensions: 958494
Number of successful extensions: 16233
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 1477
Number of HSP's that attempted gapping in prelim test: 9299
Number of HSP's gapped (non-prelim): 6113
length of query: 231
length of database: 18,247,518
effective HSP length: 99
effective length of query: 132
effective length of database: 14,498,784
effective search space: 1913839488
effective search space used: 1913839488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.