Guide to the Human Genome
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Search of human proteins with 239743069

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
         (231 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ...   479   e-136
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]           479   e-136
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]           468   e-132
gi|239749044 PREDICTED: hypothetical protein XP_002346891 [Homo ...   180   1e-45
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             56   3e-08
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    55   4e-08
gi|149158690 HLA-B associated transcript-2 [Homo sapiens]              54   9e-08
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]          53   2e-07
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]            50   1e-06
gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]            49   3e-06
gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]            49   3e-06
gi|59806361 hypothetical protein LOC387104 [Homo sapiens]              49   4e-06
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ...    49   4e-06
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]            48   6e-06
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom...    47   1e-05
gi|82546824 forkhead box K1 [Homo sapiens]                             47   1e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      47   1e-05
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    47   1e-05
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho...    47   1e-05
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho...    47   1e-05
gi|27894378 chloride intracellular channel 6 [Homo sapiens]            47   1e-05
gi|239754474 PREDICTED: similar to mucin [Homo sapiens]                47   2e-05
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]            47   2e-05
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ...    47   2e-05
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo...    47   2e-05
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo...    47   2e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    46   2e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    46   2e-05
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]            46   3e-05
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]            46   3e-05

>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
           sapiens]
          Length = 231

 Score =  479 bits (1234), Expect = e-136
 Identities = 231/231 (100%), Positives = 231/231 (100%)

Query: 1   MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
           MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP
Sbjct: 1   MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60

Query: 61  ATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV 120
           ATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV
Sbjct: 61  ATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV 120

Query: 121 RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH 180
           RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH
Sbjct: 121 RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH 180

Query: 181 VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
           VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP
Sbjct: 181 VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231


>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 231

 Score =  479 bits (1234), Expect = e-136
 Identities = 231/231 (100%), Positives = 231/231 (100%)

Query: 1   MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
           MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP
Sbjct: 1   MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60

Query: 61  ATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV 120
           ATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV
Sbjct: 61  ATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV 120

Query: 121 RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH 180
           RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH
Sbjct: 121 RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH 180

Query: 181 VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
           VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP
Sbjct: 181 VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231


>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 228

 Score =  468 bits (1204), Expect = e-132
 Identities = 228/231 (98%), Positives = 228/231 (98%), Gaps = 3/231 (1%)

Query: 1   MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
           MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP
Sbjct: 1   MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60

Query: 61  ATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV 120
           ATAESPDTPEEPPEEPAPAIAPGG   GGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV
Sbjct: 61  ATAESPDTPEEPPEEPAPAIAPGG---GGGGCGAQHWAAGRRAQREQGAGAAVLADFGHV 117

Query: 121 RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH 180
           RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH
Sbjct: 118 RAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAH 177

Query: 181 VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
           VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP
Sbjct: 178 VARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 228


>gi|239749044 PREDICTED: hypothetical protein XP_002346891 [Homo
          sapiens]
          Length = 114

 Score =  180 bits (456), Expect = 1e-45
 Identities = 87/89 (97%), Positives = 87/89 (97%)

Query: 1  MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
          MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP
Sbjct: 1  MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60

Query: 61 ATAESPDTPEEPPEEPAPAIAPGGSGGGG 89
          ATAESPDTPEEPPEEPAPAIAPGGSG  G
Sbjct: 61 ATAESPDTPEEPPEEPAPAIAPGGSGENG 89


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 62/211 (29%), Positives = 76/211 (36%), Gaps = 31/211 (14%)

Query: 24  GWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPG 83
           G R  +++S P   +S  P + R +AAAAA            P  P    E P+P  AP 
Sbjct: 325 GGRPGSAHSPPDKPSSPSPRV-RDKAAAAA------------PTPPARGKESPSPRSAPS 371

Query: 84  GSGGG---GGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRG 140
             G G    GG G +     RR +    A A         R AP     R L R R    
Sbjct: 372 SQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSD 431

Query: 141 GRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAG- 199
                 A  PGP+  G+ER    H      RPP     A  A  S   GA    GGP G 
Sbjct: 432 SGSGRGAPGPGPE-PGSERGHGGHGKRAKERPP----RARPASTSPSPGAHGRRGGPEGK 486

Query: 200 ---------PRESWARRTSSPPRGAAGGGRP 221
                    PR   + R+ S  R  +   RP
Sbjct: 487 SSSRSPGPHPRSWSSSRSPSKSRSRSAEKRP 517



 Score = 30.8 bits (68), Expect = 1.0
 Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 13/116 (11%)

Query: 105 REQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAH 164
           R++G         G    +PSG       +R GG G R      +PG   +  ++  P+ 
Sbjct: 283 RDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDK--PSS 340

Query: 165 RAPRL-----ARPPVPPS------VAHVARASAGLGARPVPGGPAGPRESWARRTS 209
            +PR+     A  P PP+          A +S G G R   G     R    RR S
Sbjct: 341 PSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRS 396


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 70/220 (31%), Positives = 80/220 (36%), Gaps = 32/220 (14%)

Query: 13  PCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATA--ESPDTPE 70
           P    RP+V  G     +  RP    SAG   C    AAAA  AG  PA A    P  P 
Sbjct: 107 PPSPRRPLVPAGPAPPAAKLRPPPEGSAGS--CAPVPAAAAVAAGPEPAPAGPAKPAGPA 164

Query: 71  EPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAP-----S 125
                  P   PG   G G G G     AG  A +     AA+L    H  AAP     +
Sbjct: 165 ALAARAGPGPGPGPGPGPGPGPGK---PAGPGAAQTLNGSAALLN--SHHAAAPAVSLVN 219

Query: 126 GLRRRRLQRRRGGRGGR------GAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVA 179
                 L   +    G         G A  P P  A +  + PA  AP  A PP PP+ A
Sbjct: 220 NGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAP-AAPSPPAAPAPAAPAAAPPPPPPAPA 278

Query: 180 HVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGG 219
            +AR          PG PAGP    A     PP  A  GG
Sbjct: 279 TLARP---------PGHPAGP--PTAAPAVPPPAAAQNGG 307



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 54/192 (28%), Positives = 68/192 (35%), Gaps = 25/192 (13%)

Query: 28  RNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGG 87
           R    R ++  + G  +     A AA    AAPA   +P    EPP  PA    PGG G 
Sbjct: 46  RTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEG-APGAAPEPP--PAGRARPGGGGP 102

Query: 88  GGGG----------CGAQHWAAGRRAQREQGAGA-----AVLADFGHVRAAPSGLRR--- 129
              G           G    AA  R   E  AG+     A  A       AP+G  +   
Sbjct: 103 QRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAG 162

Query: 130 -RRLQRRRGGRGGRGAGRARKPGPDR---AGAERSLPAHRAPRLARPPVPPSVAHVARAS 185
              L  R G   G G G    PGP +    GA ++L    A   +     P+V+ V    
Sbjct: 163 PAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGP 222

Query: 186 AGLGARPVPGGP 197
           A L   P P  P
Sbjct: 223 AALLPLPKPAAP 234



 Score = 36.6 bits (83), Expect = 0.019
 Identities = 51/188 (27%), Positives = 70/188 (37%), Gaps = 17/188 (9%)

Query: 34  PSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEP--PEEPAPAIAPGGSGGGGGG 91
           P + A+  P      AA AA      PA A     P  P  P   APA+ P  +   GG 
Sbjct: 249 PPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGS 308

Query: 92  CGAQHW---AAGRRA--QREQGAGAAVLADFGHVRA-APSGLRRRR--LQRRRGGRGGRG 143
            GA      AAG  A    + G GAA  A    V+A +P  + +      +     G   
Sbjct: 309 AGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPAS 368

Query: 144 AGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRES 203
              +   GP   GA   LP   +P    PP P +   + + +AG   + +   P     S
Sbjct: 369 TAASMVIGPTMQGA---LP---SPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTA-TTS 421

Query: 204 WARRTSSP 211
             R T +P
Sbjct: 422 GIRATLTP 429



 Score = 34.7 bits (78), Expect = 0.071
 Identities = 29/76 (38%), Positives = 32/76 (42%), Gaps = 16/76 (21%)

Query: 155 AGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARP---------VPGGPAGPRESWA 205
           AGA  + PA  AP  A  P P   A  AR   G   RP         VP GPA P    A
Sbjct: 71  AGAGPAAPAEGAPGAAPEPPP---AGRARPGGGGPQRPGPPSPRRPLVPAGPAPP----A 123

Query: 206 RRTSSPPRGAAGGGRP 221
            +   PP G+AG   P
Sbjct: 124 AKLRPPPEGSAGSCAP 139


>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
          Length = 2157

 Score = 54.3 bits (129), Expect = 9e-08
 Identities = 59/216 (27%), Positives = 85/216 (39%), Gaps = 35/216 (16%)

Query: 34   PSSRASAGPGLCRTEAAAA----ATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGG 89
            P   A+  P L    +  A     T + ++  T+E     E PP       A G  GGGG
Sbjct: 1299 PRRAAAKSPDLSNQNSDQANEEWETASESSDFTSERRGDKEAPPPVLLTPKAVGTPGGGG 1358

Query: 90   GGC--GAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGR-------- 139
            GG   G    + G  +QR +       +      +   G+ R+  +   GG+        
Sbjct: 1359 GGAVPGISAMSRGDLSQRAKDLSKRSFS------SQRPGMERQNRRPGPGGKAGSSGSSS 1412

Query: 140  GGRGAGRARKPGPDRAGAERSLPA---------HRAPRLARPPVPPSVAHVARASAGLGA 190
            GG G G   + GP R G +RS P+          R P L  PP PPS + V R       
Sbjct: 1413 GGGGGGPGGRTGPGR-GDKRSWPSPKNRSRPPEERPPGLPLPPPPPSSSAVFRLD----- 1466

Query: 191  RPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPG 226
            + +   PAG +++ A+ +S      A GG P   PG
Sbjct: 1467 QVIHSNPAGIQQALAQLSSRQGSVTAPGGHPRHKPG 1502



 Score = 37.4 bits (85), Expect = 0.011
 Identities = 52/224 (23%), Positives = 73/224 (32%), Gaps = 25/224 (11%)

Query: 24   GWRMRNSNSRPSSRASAG----PGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPA 79
            G R+      PS R   G    P +C   +  A + A   P T   P + E   E+  P 
Sbjct: 1157 GGRVFTPRGVPSRRGRGGGRPPPQVCPGWSPPAKSLAPKKPPTGPLPPSKEPLKEKLIPG 1216

Query: 80   -IAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGG 138
             ++P   GG  GG         R  +R  G            +  P   RR + +R    
Sbjct: 1217 PLSPVARGGSNGGSNVGMEDGERPRRRRHGR--------AQQQDKPPRFRRLKQERENAA 1268

Query: 139  RGGRGAGR----ARKPGPDRAGAERSL-PAHRAPRLARPPVPPSVA-------HVARASA 186
            RG  G       A  PGP+ A    ++ PA R      P +    +         A  S+
Sbjct: 1269 RGSEGKPSLTLPASAPGPEEALTTVTVAPAPRRAAAKSPDLSNQNSDQANEEWETASESS 1328

Query: 187  GLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGD 230
               +       A P      +    P G  GG  P +    RGD
Sbjct: 1329 DFTSERRGDKEAPPPVLLTPKAVGTPGGGGGGAVPGISAMSRGD 1372



 Score = 31.6 bits (70), Expect = 0.60
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 30  SNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEE----PPEE-------PAP 78
           + S P+   +A P L     + ++T +G+  A+   P  P +    PPEE       P P
Sbjct: 555 AQSTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPEPPEEVPPPTTPPVP 614

Query: 79  AIAPGGSGGG 88
            + P G G G
Sbjct: 615 KVEPKGDGIG 624


>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
          Length = 430

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 55/170 (32%), Positives = 65/170 (38%), Gaps = 25/170 (14%)

Query: 72  PPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRR 131
           P +E APA+   G G GG   GA   + G R  R         A    + A P+G  R  
Sbjct: 41  PGDEAAPALGRRGKGSGGPEAGADGLSRGERGPRR--------AAVPELSAQPAGSPRAS 92

Query: 132 LQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARP-----PVPPSVAHVARASA 186
           L    G  GG G G AR  G      +R    H +PR  R      P PPSV     + +
Sbjct: 93  L---AGSDGGGGGGSARSSGISLGYDQR----HGSPRSGRSDPRPGPGPPSVGSARSSVS 145

Query: 187 GLGARPVPGGPAG---PRESWARRTSSPPRGAAGGGRPF--LHPGGRGDP 231
            LG+R   G  A    P    A   S  P G A    P   L PG  G P
Sbjct: 146 SLGSRGSAGAYADFLPPGACPAPARSPEPAGPAPFPLPALPLPPGREGGP 195



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 43/154 (27%), Positives = 55/154 (35%), Gaps = 12/154 (7%)

Query: 33  RPSSRASAGPGLCRTEAAAAATRAGA--------APATAESPDTPEEPPEEPAPAIAPGG 84
           RP     A P L R    +    AGA         P  A  P+   +P   P  ++A   
Sbjct: 38  RPGPGDEAAPALGRRGKGSGGPEAGADGLSRGERGPRRAAVPELSAQPAGSPRASLAGSD 97

Query: 85  SGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGA 144
            GGGGG   +   + G    +  G+  +  +D       PS    R      G RG  GA
Sbjct: 98  GGGGGGSARSSGISLG--YDQRHGSPRSGRSDPRPGPGPPSVGSARSSVSSLGSRGSAGA 155

Query: 145 -GRARKPGPDRAGAERSLPAHRAP-RLARPPVPP 176
                 PG   A A    PA  AP  L   P+PP
Sbjct: 156 YADFLPPGACPAPARSPEPAGPAPFPLPALPLPP 189



 Score = 31.6 bits (70), Expect = 0.60
 Identities = 31/86 (36%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 28  RNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAI-APGGSG 86
           R+S S   SR SAG       A A     GA PA A SP+ P  P   P PA+  P G  
Sbjct: 141 RSSVSSLGSRGSAG-------AYADFLPPGACPAPARSPE-PAGPAPFPLPALPLPPGRE 192

Query: 87  GGGGGCGAQHWAAGRRAQREQGAGAA 112
           GG      +  A  R  +R   A  A
Sbjct: 193 GGPSAAERRLEALTRELERALEARTA 218


>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 182

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 49/170 (28%), Positives = 61/170 (35%), Gaps = 49/170 (28%)

Query: 34  PSSRASAGPGLCRTEAAAAATRAGA--APATAESPDTPEEPPEEPAPAIAPGGSGGGGGG 91
           P + A+   G        AA R+G       + S   P  PP  P+ + + G SG  GGG
Sbjct: 4   PPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGG 63

Query: 92  CGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPG 151
                           G+G+A     G + A   G   RR   R GGR G  A RAR+P 
Sbjct: 64  ----------------GSGSAGQPTLGSMLAV--GSAARRASERAGGRAGGTALRAREP- 104

Query: 152 PDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPR 201
                          P L  PP PP              +P P GPA PR
Sbjct: 105 --------------PPPLLPPPSPP--------------QPGPKGPASPR 126


>gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 268

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 42/149 (28%), Positives = 60/149 (40%), Gaps = 18/149 (12%)

Query: 75  EPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQR 134
           E +P ++  G    G    A   AA R  ++      A +  +G  RA       R L R
Sbjct: 65  EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARA-------RGLDR 117

Query: 135 RRGGRGGRGAGRARKPGPDRAGAERSLPA-----------HRAPRLARPPVPPSVAHVAR 183
           R  G GGR  G   +P P   GA  + PA            RAP++    +PP +  ++R
Sbjct: 118 RAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSR 177

Query: 184 ASAGLGARPVPGGPAGPRESWARRTSSPP 212
           A    G R +PG    P  S  +  + PP
Sbjct: 178 AGGATGGRGLPGRRGLPGRSGLQGAAVPP 206


>gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 193

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 56/176 (31%), Positives = 67/176 (38%), Gaps = 34/176 (19%)

Query: 69  PEEPPEEPAPAIAPGGS-GGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPS-- 125
           P +  E P P    G + GGGGGG G+     GR AQR  GAGA        + AAPS  
Sbjct: 19  PGDGDEAPGPGGGEGAAAGGGGGGLGS----GGRSAQRRAGAGAR-----RPIGAAPSVG 69

Query: 126 ------GLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAE---RSLPAHRAPRLARPPVPP 176
                 G  R+   R  G  G  G  + R+  P R  +    RS  A  A R  R   P 
Sbjct: 70  PGGELQGWGRKSGCRPPGPEGWAGGRKLRRWLPPRRFSNFCCRSPCAQTAVRRRRRRAPS 129

Query: 177 SVAHVARASAGLG-------------ARPVPGGPAGPRESWARRTSSPPRGAAGGG 219
                 R  AG G             A P+     G R  +  R+  PPR   GGG
Sbjct: 130 PRGAGWREGAGAGRGTPATMAGGEWAAEPLHLPQRGRRRRFTCRSGRPPRRGRGGG 185


>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
          Length = 947

 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 45/135 (33%), Positives = 57/135 (42%), Gaps = 23/135 (17%)

Query: 34  PSSRASAGPGLCRTEAAA-AATRAGAAPATAESPDTPEEPPEEPAPAIA------PGGSG 86
           P +   A PG  +  A A AA  A  A      P  PEEPP E     +      P G G
Sbjct: 107 PLAPKGAAPGAVQPVAGAEAAPAATLAALGGRRPGPPEEPPRELESVPSKLGEPPPLGEG 166

Query: 87  GGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQ-RRRGGRGGRGAG 145
           GGGGG G    A G   +RE GA              P G R + ++ ++RGG GG GA 
Sbjct: 167 GGGGGEGG--GAGGGSGEREGGAPQP---------PPPRGWRGKGVRAQQRGGSGGEGA- 214

Query: 146 RARKPGPDRAGAERS 160
               P P  + A ++
Sbjct: 215 ---SPSPSSSSAGKT 226



 Score = 35.8 bits (81), Expect = 0.032
 Identities = 39/180 (21%), Positives = 64/180 (35%), Gaps = 16/180 (8%)

Query: 24  GWRMRNSNSRPSSRASAGPGL-CRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAP 82
           G R   +   P  R   G G+  +    +    A  +P+++ +  TP          +A 
Sbjct: 181 GEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTPGTGSRNSGSGVAG 240

Query: 83  GGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGR 142
           GGSGGGG      +W        ++G   + L  F H++   +       Q      GG 
Sbjct: 241 GGSGGGG-----SYW--------KEGCLQSELIQF-HLKKERAAAAAAAAQMHAKNGGGS 286

Query: 143 GAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRE 202
            +  +   GP  A  E    A  +P  A    P   A  + +  G+ A   P     P++
Sbjct: 287 SSRSSPVSGPP-AVCETLAVASASPMAAAAEGPQQSAEGSASGGGMQAAAPPSSQPHPQQ 345



 Score = 33.1 bits (74), Expect = 0.21
 Identities = 51/164 (31%), Positives = 53/164 (32%), Gaps = 35/164 (21%)

Query: 78  PAIAPGGSGGG---------GGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLR 128
           PA   GG GG          G   GA    AG  A     A AA LA  G  R  P    
Sbjct: 92  PASIRGGGGGAEKATPLAPKGAAPGAVQPVAGAEA-----APAATLAALGGRRPGPPEEP 146

Query: 129 RRRLQR------------RRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPP 176
            R L+               GG GG G G     G    GA +  P    PR  R     
Sbjct: 147 PRELESVPSKLGEPPPLGEGGGGGGEGGGAGGGSGEREGGAPQPPP----PRGWRG--KG 200

Query: 177 SVAHVARASAGLGARPVP-GGPAGPRESWARRTSSPPRGAAGGG 219
             A     S G GA P P    AG       R S    G AGGG
Sbjct: 201 VRAQQRGGSGGEGASPSPSSSSAGKTPGTGSRNSG--SGVAGGG 242



 Score = 28.1 bits (61), Expect = 6.6
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 13/64 (20%)

Query: 169 LARPPV---PPSVAHVARASAGLGARPVPGG----------PAGPRESWARRTSSPPRGA 215
           +++PP+    P+ A  + A+A   AR  P G          PA PR+S  R+T +  R  
Sbjct: 1   MSQPPIGGAAPATAAASPAAAATEARLHPEGSSRKQQRAQSPARPRDSSLRQTIAATRSP 60

Query: 216 AGGG 219
            G G
Sbjct: 61  VGAG 64


>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
           sapiens]
          Length = 935

 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 57/178 (32%), Positives = 66/178 (37%), Gaps = 40/178 (22%)

Query: 57  GAAPATAESPDTPEE---PPEEPAPAIAP-----GGSGGGGGGCGAQHWAAGRRAQREQG 108
           GA   TA  PD   +   P   PAP  +       G  G G G GA+     RRA+  Q 
Sbjct: 731 GATTQTATLPDGQTDRARPWSPPAPGESRDRARGAGQPGPGSGSGAERAGPERRARDTQ- 789

Query: 109 AGAAVLADFGHVRAAPSGLRRRRL-QRRRGGRGGRGAGRA--RKPGPDRAGAERSLPAHR 165
                           +  RR +L    RGGR    AGR   R+ G  RAGA       R
Sbjct: 790 ----------------TRTRRDKLTDSARGGRARLTAGRRVRRESGRRRAGATSQGAIRR 833

Query: 166 APRLARP-----PVPPSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGG 218
           A   AR      P+P +       SAG  A P P      R SW  R S P R A  G
Sbjct: 834 AASRARKGESRRPLPAN-------SAGRPALPSPAAARSARGSWGLRASRPSRAAPRG 884


>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 292

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 70/240 (29%), Positives = 83/240 (34%), Gaps = 33/240 (13%)

Query: 5   RPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAE 64
           RP  +   P      +     R    ++ P  R S    LC      A +   A P  A 
Sbjct: 18  RPAARQVAPPGGPXSLARTHSRRHPDHAPPPGRPSCSRPLC------AGSSCLATPEPAR 71

Query: 65  SPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFG-HVRAA 123
           +P   E  P  P  A  PG   GGGG  G         A+ E    +    D    V AA
Sbjct: 72  APSIAEPGPGIPVAAAKPGVLPGGGGCTG---------ARTENPPLSPTRGDCRVPVPAA 122

Query: 124 PSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPV----PPSVA 179
           P  LR R    R    GG  AGRA  P  D+A     L    AP+L  P V    PP  +
Sbjct: 123 PISLRWR--SGREARPGGPQAGRAGDPKADQA---MHLQPAWAPKLQPPSVCRQQPPGNS 177

Query: 180 HVARASAGLGARP-VPGGPAGPRES-------WARRTSSPPRGAAGGGRPFLHPGGRGDP 231
                S  LG R   P G    R S          R S+P R A       +   GRG P
Sbjct: 178 RARPHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSRVAVEDPWLEVSSSGRGGP 237


>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
            containing 2 [Homo sapiens]
          Length = 1455

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 63/215 (29%), Positives = 80/215 (37%), Gaps = 41/215 (19%)

Query: 35   SSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGA 94
            SS A+A PGL        +   G AP +   P     PP +P+  I+PG +         
Sbjct: 1242 SSPAAAAPGL---PEVGVSLDDGLAPFSPSHP----APPSDPSHQISPGPT--------- 1285

Query: 95   QHWAAGR----RAQREQGAGAAVLADFGHVR---AAPSGLRRRRLQRRRGGRG----GRG 143
              W   R    R  +E  A        G  R   A+P    R RL+   GG+G    GR 
Sbjct: 1286 --WDIKREHDVRKPKELSACGQKKQRLGEQRERSASPQRAARPRLEEAPGGQGRPEAGRP 1343

Query: 144  AGRARKPG--------PDRAGAERSLPAHRAPRLAR---PPVPPSVAHVARASAG-LGAR 191
            A  AR PG          RAG + +  A     L R   P   P+ A      +G L A 
Sbjct: 1344 ASEARAPGLAAADAADAARAGGKEAPRAAAGSELCRREGPGAAPAFAGPGGGGSGALEAE 1403

Query: 192  PVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPG 226
               G  AGPR        +P R AA    P+  PG
Sbjct: 1404 GRAGARAGPRPGPRPPGGAPARKAAVAPGPWKVPG 1438



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 37/103 (35%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 9    KSTEPCDELRPMV--TLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGA-APATAES 65
            +S  P    RP +    G + R    RP+S A A PGL   +AA AA   G  AP  A  
Sbjct: 1316 RSASPQRAARPRLEEAPGGQGRPEAGRPASEARA-PGLAAADAADAARAGGKEAPRAAAG 1374

Query: 66   PDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQG 108
             +         APA A  G GGGG G       AG RA    G
Sbjct: 1375 SELCRREGPGAAPAFA--GPGGGGSGALEAEGRAGARAGPRPG 1415



 Score = 37.0 bits (84), Expect = 0.014
 Identities = 49/192 (25%), Positives = 70/192 (36%), Gaps = 21/192 (10%)

Query: 11   TEPCDELRPMVTLGWRMRNSNSRPSSRASAGP-----GLCRTEAA----AAATRAGAAPA 61
            ++P  ++ P  T   +  +   +P   ++ G      G  R  +A    AA  R   AP 
Sbjct: 1274 SDPSHQISPGPTWDIKREHDVRKPKELSACGQKKQRLGEQRERSASPQRAARPRLEEAPG 1333

Query: 62   TAESPDTPEEPPEEPAPAIAPGGSGGGG--GGCGAQHWAAGRRAQREQGAGAAVLADFGH 119
                P+      E  AP +A   +      GG  A   AAG    R +G GAA       
Sbjct: 1334 GQGRPEAGRPASEARAPGLAAADAADAARAGGKEAPRAAAGSELCRREGPGAA------P 1387

Query: 120  VRAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVA 179
              A P G     L+    GR G  AG   +PGP   G   +  A  AP   + P    + 
Sbjct: 1388 AFAGPGGGGSGALEAE--GRAGARAG--PRPGPRPPGGAPARKAAVAPGPWKVPGSDKLP 1443

Query: 180  HVARASAGLGAR 191
             V +  A   +R
Sbjct: 1444 SVLKPGASAASR 1455


>gi|82546824 forkhead box K1 [Homo sapiens]
          Length = 733

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 37/114 (32%), Positives = 43/114 (37%), Gaps = 6/114 (5%)

Query: 38  ASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPG-----GSGGGGGGC 92
           A   P LC   AAAA   A   PA A+ P  P  PP  P P + PG     GS GG  G 
Sbjct: 19  APCSPVLCAAAAAAAFPAAAPPPAPAQ-PQPPPGPPPPPPPPLPPGAIAGAGSSGGSSGV 77

Query: 93  GAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGR 146
                 AG        A A+V    G   A   G     L R+     GR + +
Sbjct: 78  SGDSAVAGAAPALVAAAAASVRQSPGPALARLEGREFEFLMRQPSVTIGRNSSQ 131


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 55/172 (31%), Positives = 65/172 (37%), Gaps = 15/172 (8%)

Query: 73  PEEPAP---AIAPGGSGG-GGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAA----- 123
           P EP P   A APG  GG G  G   +    G         GA      G   AA     
Sbjct: 656 PGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGP 715

Query: 124 PSGLRRRRLQRRRGGRGGRGAG--RARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHV 181
           P       LQ   G RGG G+   +  K  P   GA+  +P    PR    P+ P     
Sbjct: 716 PGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGAD-GVPGKDGPRGPTGPIGPPGPAG 774

Query: 182 ARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAG-GGRPFLH--PGGRGD 230
                G G  P   G AGPR S   R  + P G AG  G P  +  PGG+G+
Sbjct: 775 QPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGE 826



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 49/174 (28%), Positives = 57/174 (32%), Gaps = 21/174 (12%)

Query: 59   APATAESPDTPEEP-PEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADF 117
            +P    +P  P  P P  PA      G  G  G  GA   A  R A   QG         
Sbjct: 1039 SPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQG--------- 1089

Query: 118  GHVRAAPSGLRRRRLQRRRGG-RGGRG-AGRARKPGPDRAGAERSLPAHRAPRLARPPVP 175
                  P G +    +R   G +G RG  G    PG      ++       P   R PV 
Sbjct: 1090 ------PRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVG 1143

Query: 176  PSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRG 229
            PS         G    P P GP GPR +   R S    G  G   P   PG  G
Sbjct: 1144 PSGPP---GKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPG 1194



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 55/208 (26%), Positives = 72/208 (34%), Gaps = 25/208 (12%)

Query: 34   PSSRASAGPGLCRTEAAAAATRAGAAPATAE-SPDTPEEPPEEPAPAIAPGGSGG-GGGG 91
            P  R S GP   + E+     + GA   + E  P  P+  P     A  PG  G  G  G
Sbjct: 965  PGPRGSPGPQGVKGESG----KPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDG 1020

Query: 92   CGAQHWAAGRRAQREQGAGAAVLADFGHVR----AAPSGLRRRRLQRRRGGRGGRG-AGR 146
               +  + G +  R +          GH        P+G        + G RG  G AG 
Sbjct: 1021 LPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAG--------KSGDRGESGPAGP 1072

Query: 147  ARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARP-VPG--GPAGPRES 203
            A  PGP      R  P  + PR  +       A   +   G    P  PG  GPAG + +
Sbjct: 1073 AGAPGP---AGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGA 1129

Query: 204  WARRTSSPPRGAAGGGRPFLHPGGRGDP 231
                  + PRG  G   P    G  G P
Sbjct: 1130 IGSPGPAGPRGPVGPSGPPGKDGTSGHP 1157



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 58/203 (28%), Positives = 67/203 (33%), Gaps = 21/203 (10%)

Query: 34  PSSRASAG-PGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGC 92
           P  R   G PG    +       A   P   + P  P  P   P PA  PG  G GG   
Sbjct: 728 PGERGGLGSPGPKGDKGEPGGPGADGVPGK-DGPRGPTGPIGPPGPAGQPGDKGEGGAP- 785

Query: 93  GAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRR-GGRGGRGA-GRARKP 150
           G    A  R +  E+G               P+G      Q    GG+G RGA G   + 
Sbjct: 786 GLPGIAGPRGSPGERGETGP---------PGPAGFPGAPGQNGEPGGKGERGAPGEKGEG 836

Query: 151 GPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPG--GPAGPRESWARRT 208
           GP         P    P  A PP P  V     +  G GA   PG  G  GP  S     
Sbjct: 837 GPPGVAGP---PGGSGP--AGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPG 891

Query: 209 SSPPRGAAGGGRPFLHPGGRGDP 231
              P G+ G   P    G  G P
Sbjct: 892 PPGPSGSPGKDGPPGPAGNTGAP 914



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 50/189 (26%), Positives = 60/189 (31%), Gaps = 33/189 (17%)

Query: 69  PEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLR 128
           P  PP  P  AI P G  G  G  G      GR  +R       +    G +   P    
Sbjct: 211 PSGPPGPPG-AIGPSGPAGKDGESGRP----GRPGERGLPGPPGIKGPAG-IPGFPGMKG 264

Query: 129 RRRLQRRRGGRGGRGA-------------------------GRARKPG-PDRAGAERSLP 162
            R    R G +G  GA                         G   +PG P  AGA  +  
Sbjct: 265 HRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDG 324

Query: 163 AHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPF 222
           A  +     PP PP  A     S G      P G  G   +  +R    P+G AG   P 
Sbjct: 325 ARGSDGQPGPPGPPGTAGFP-GSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPP 383

Query: 223 LHPGGRGDP 231
             PG  G P
Sbjct: 384 GPPGINGSP 392



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 56/220 (25%), Positives = 68/220 (30%), Gaps = 46/220 (20%)

Query: 34  PSSRASAG-------PGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPG--G 84
           P  +  AG       PGL    A A   R GA P   E       PP  P  A  PG  G
Sbjct: 671 PGGKGDAGAPGERGPPGL----AGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQG 726

Query: 85  SGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRG- 143
             G  GG G    + G +  + +                P G     +  + G RG  G 
Sbjct: 727 MPGERGGLG----SPGPKGDKGE----------------PGGPGADGVPGKDGPRGPTGP 766

Query: 144 ---AGRARKPGPDRAGAERSLPAHRAPR-------LARPPVPPSVAHVARASAGLGARPV 193
               G A +PG    G    LP    PR          PP P         +   G +  
Sbjct: 767 IGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGE 826

Query: 194 PGGPAGPRESWARRTSSPPRGAAGGGRPFLH--PGGRGDP 231
            G P    E      + PP G+   G P      G RG P
Sbjct: 827 RGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSP 866



 Score = 38.1 bits (87), Expect = 0.006
 Identities = 58/213 (27%), Positives = 72/213 (33%), Gaps = 24/213 (11%)

Query: 30   SNSRPSSRASAG-PGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIA--PGGSG 86
            SN  P     +G PG       A  T A  +P  +       +P E+ +P     PG  G
Sbjct: 886  SNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPG 945

Query: 87   --GGGGGCGAQHWAA--GRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGR 142
              G  G  GA+  A   G    R       V  + G   A         L   RG  G +
Sbjct: 946  PLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGA-------NGLSGERGPPGPQ 998

Query: 143  G----AGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPA 198
            G    AG A +PG D       LP        +     + +  A  + G    P P GP 
Sbjct: 999  GLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPG---HPGPPGPV 1055

Query: 199  GPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
            GP      R  S P G AG   P    G RG P
Sbjct: 1056 GPAGKSGDRGESGPAGPAGAPGP---AGSRGAP 1085



 Score = 37.0 bits (84), Expect = 0.014
 Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 9/97 (9%)

Query: 137 GGRGGRG-AGRARKPGPDRAGAERSLPAHRAPRLAR-PPVPPSVAHVARASAGLGARPVP 194
           G  G +G  G A  PG + A  +R  P  +    A+ PP PP +         +G   +P
Sbjct: 345 GSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIP 404

Query: 195 GGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
           G P             PP  A   G P L  GG G+P
Sbjct: 405 GAPG------LMGARGPPGPAGANGAPGLR-GGAGEP 434



 Score = 33.9 bits (76), Expect = 0.12
 Identities = 58/222 (26%), Positives = 68/222 (30%), Gaps = 29/222 (13%)

Query: 31  NSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGG- 89
           N  P  +   GP            R    PA A           EP    A G  G  G 
Sbjct: 389 NGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGE 448

Query: 90  -GGCGAQHWAAGRRAQREQGA----GAAVLADFGHVRAAPSGLRR----RRLQRRRGGRG 140
            G  G       +    + G+    GA  L      R AP G R       +   +G  G
Sbjct: 449 RGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAP-GFRGPAGPNGIPGEKGPAG 507

Query: 141 GRGA-------GRARKPGPDRAGAE---RSLPAHRA-PRLARPPVPPSVAHVARASAGLG 189
            RGA       G A +PG D        R +P     P     P PP        S G  
Sbjct: 508 ERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPG-------SQGES 560

Query: 190 ARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
            RP P GP+GPR          P+G  G        GG G P
Sbjct: 561 GRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGP 602


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
            sapiens]
          Length = 1751

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 59/222 (26%), Positives = 71/222 (31%), Gaps = 47/222 (21%)

Query: 36   SRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQ 95
            S+ + GP   R E+  A      AP  A  P  P  PP  P P +  G     G G    
Sbjct: 984  SKGAPGPAGARGESGLAG-----APGPA-GPPGPPGPPGPPGPGLPAGFDDMEGSG--GP 1035

Query: 96   HWAAGRRAQREQGA----------------GAAVLADFGHVRAAPSGLRRRRLQRRRGGR 139
             W+  R A   QG                 GA        V   P    R  +   +G +
Sbjct: 1036 FWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPK 1095

Query: 140  GGRGA-GRARKPGPDRAGAERSLPAHRAPRLARPPVPPS-VAHVARASA----------- 186
            G RG+ G    PG D  G          P L  PP PP  V +V+               
Sbjct: 1096 GDRGSRGEKGDPGKDGVGQ---------PGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR 1146

Query: 187  -GLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGG 227
             G    P P GP G   S   R S  P+G  G       P G
Sbjct: 1147 PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDG 1188



 Score = 33.1 bits (74), Expect = 0.21
 Identities = 35/97 (36%), Positives = 38/97 (39%), Gaps = 19/97 (19%)

Query: 137  GGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGG 196
            G +G +GA     PGP  A  E  L    AP  A PP PP          G    P PG 
Sbjct: 980  GHKGSKGA-----PGPAGARGESGLAG--APGPAGPPGPP----------GPPGPPGPGL 1022

Query: 197  PAG--PRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
            PAG    E       S  R A G   P   PG +GDP
Sbjct: 1023 PAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDP 1059



 Score = 32.7 bits (73), Expect = 0.27
 Identities = 48/169 (28%), Positives = 61/169 (36%), Gaps = 25/169 (14%)

Query: 72  PPEEPAPAIAPGGSGGGGGG--CGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRR 129
           PP    P +A G S           Q   A   AQ   G+ +    D G VR     ++ 
Sbjct: 692 PPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWD-GSVRTPGGRVKE 750

Query: 130 RRLQRRRGGRGGRGA-GRARKPGPDRAGAERSLPAHRAPRLARPP-VPPSVAHVARASAG 187
             L+ ++G  G  G  GRA  PG              +P L  PP +P  V+ +  A   
Sbjct: 751 GGLKGQKGEPGVPGPPGRAGPPG--------------SPCLPGPPGLPCPVSPLGPAGPA 796

Query: 188 LGARPVPGGPAGP--RESWARRTSSP----PRGAAGGGRPFLHPGGRGD 230
           L   P P GP GP  R+    R   P      G  G   P   PG  GD
Sbjct: 797 LQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGD 845



 Score = 30.8 bits (68), Expect = 1.0
 Identities = 29/91 (31%), Positives = 34/91 (37%), Gaps = 22/91 (24%)

Query: 148  RKPGPDRAGAERSL-----PAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRE 202
            R+  P R G + SL     P H+  + A  P        AR  +GL   P P GP GP  
Sbjct: 960  REGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAG------ARGESGLAGAPGPAGPPGP-- 1011

Query: 203  SWARRTSSPPRGAAGGGRP--FLHPGGRGDP 231
                     P G  G G P  F    G G P
Sbjct: 1012 -------PGPPGPPGPGLPAGFDDMEGSGGP 1035



 Score = 29.3 bits (64), Expect = 3.0
 Identities = 47/198 (23%), Positives = 63/198 (31%), Gaps = 29/198 (14%)

Query: 22   TLGWRMRNSNSRPSSRASAGPG---LCRTEAAAAATRAGAAPATA-ESPDTPEEPPEEPA 77
            +LG+ MR     P      GP    +  +   A ++R G       + P  P+    E  
Sbjct: 1245 SLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVG 1304

Query: 78   PAIAPG--------------GSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAA 123
            P   PG              G  G  G        AG++ +R +  G      FG     
Sbjct: 1305 PPGPPGQFPFDFLQLEAEMKGEKGDRGD-------AGQKGERGEPGGGGF---FGSSLPG 1354

Query: 124  PSGLRRRR-LQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVA 182
            P G    R      G +G    G+   PGP              P    PP PPS     
Sbjct: 1355 PPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPH 1414

Query: 183  RASAGLGARPVPGGPAGP 200
            R +  +   P P GP GP
Sbjct: 1415 RQTISVPGPPGPPGPPGP 1432


>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1336

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 59/222 (26%), Positives = 71/222 (31%), Gaps = 47/222 (21%)

Query: 36  SRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQ 95
           S+ + GP   R E+  A      AP  A  P  P  PP  P P +  G     G G    
Sbjct: 569 SKGAPGPAGARGESGLAG-----APGPA-GPPGPPGPPGPPGPGLPAGFDDMEGSG--GP 620

Query: 96  HWAAGRRAQREQGA----------------GAAVLADFGHVRAAPSGLRRRRLQRRRGGR 139
            W+  R A   QG                 GA        V   P    R  +   +G +
Sbjct: 621 FWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPK 680

Query: 140 GGRGA-GRARKPGPDRAGAERSLPAHRAPRLARPPVPPS-VAHVARASA----------- 186
           G RG+ G    PG D  G          P L  PP PP  V +V+               
Sbjct: 681 GDRGSRGEKGDPGKDGVGQ---------PGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR 731

Query: 187 -GLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGG 227
            G    P P GP G   S   R S  P+G  G       P G
Sbjct: 732 PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDG 773



 Score = 33.1 bits (74), Expect = 0.21
 Identities = 35/97 (36%), Positives = 38/97 (39%), Gaps = 19/97 (19%)

Query: 137 GGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGG 196
           G +G +GA     PGP  A  E  L    AP  A PP PP          G    P PG 
Sbjct: 565 GHKGSKGA-----PGPAGARGESGLAG--APGPAGPPGPP----------GPPGPPGPGL 607

Query: 197 PAG--PRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
           PAG    E       S  R A G   P   PG +GDP
Sbjct: 608 PAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDP 644



 Score = 32.7 bits (73), Expect = 0.27
 Identities = 48/169 (28%), Positives = 61/169 (36%), Gaps = 25/169 (14%)

Query: 72  PPEEPAPAIAPGGSGGGGGG--CGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRR 129
           PP    P +A G S           Q   A   AQ   G+ +    D G VR     ++ 
Sbjct: 277 PPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWD-GSVRTPGGRVKE 335

Query: 130 RRLQRRRGGRGGRGA-GRARKPGPDRAGAERSLPAHRAPRLARPP-VPPSVAHVARASAG 187
             L+ ++G  G  G  GRA  PG              +P L  PP +P  V+ +  A   
Sbjct: 336 GGLKGQKGEPGVPGPPGRAGPPG--------------SPCLPGPPGLPCPVSPLGPAGPA 381

Query: 188 LGARPVPGGPAGP--RESWARRTSSP----PRGAAGGGRPFLHPGGRGD 230
           L   P P GP GP  R+    R   P      G  G   P   PG  GD
Sbjct: 382 LQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGD 430



 Score = 30.8 bits (68), Expect = 1.0
 Identities = 29/91 (31%), Positives = 34/91 (37%), Gaps = 22/91 (24%)

Query: 148 RKPGPDRAGAERSL-----PAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRE 202
           R+  P R G + SL     P H+  + A  P        AR  +GL   P P GP GP  
Sbjct: 545 REGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAG------ARGESGLAGAPGPAGPPGP-- 596

Query: 203 SWARRTSSPPRGAAGGGRP--FLHPGGRGDP 231
                    P G  G G P  F    G G P
Sbjct: 597 -------PGPPGPPGPGLPAGFDDMEGSGGP 620



 Score = 29.3 bits (64), Expect = 3.0
 Identities = 47/198 (23%), Positives = 63/198 (31%), Gaps = 29/198 (14%)

Query: 22   TLGWRMRNSNSRPSSRASAGPG---LCRTEAAAAATRAGAAPATA-ESPDTPEEPPEEPA 77
            +LG+ MR     P      GP    +  +   A ++R G       + P  P+    E  
Sbjct: 830  SLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVG 889

Query: 78   PAIAPG--------------GSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAA 123
            P   PG              G  G  G        AG++ +R +  G      FG     
Sbjct: 890  PPGPPGQFPFDFLQLEAEMKGEKGDRGD-------AGQKGERGEPGGGGF---FGSSLPG 939

Query: 124  PSGLRRRR-LQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVA 182
            P G    R      G +G    G+   PGP              P    PP PPS     
Sbjct: 940  PPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPH 999

Query: 183  RASAGLGARPVPGGPAGP 200
            R +  +   P P GP GP
Sbjct: 1000 RQTISVPGPPGPPGPPGP 1017


>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1516

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 59/222 (26%), Positives = 71/222 (31%), Gaps = 47/222 (21%)

Query: 36  SRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQ 95
           S+ + GP   R E+  A      AP  A  P  P  PP  P P +  G     G G    
Sbjct: 749 SKGAPGPAGARGESGLAG-----APGPA-GPPGPPGPPGPPGPGLPAGFDDMEGSG--GP 800

Query: 96  HWAAGRRAQREQGA----------------GAAVLADFGHVRAAPSGLRRRRLQRRRGGR 139
            W+  R A   QG                 GA        V   P    R  +   +G +
Sbjct: 801 FWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPK 860

Query: 140 GGRGA-GRARKPGPDRAGAERSLPAHRAPRLARPPVPPS-VAHVARASA----------- 186
           G RG+ G    PG D  G          P L  PP PP  V +V+               
Sbjct: 861 GDRGSRGEKGDPGKDGVGQ---------PGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR 911

Query: 187 -GLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGG 227
            G    P P GP G   S   R S  P+G  G       P G
Sbjct: 912 PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDG 953



 Score = 33.1 bits (74), Expect = 0.21
 Identities = 35/97 (36%), Positives = 38/97 (39%), Gaps = 19/97 (19%)

Query: 137 GGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGG 196
           G +G +GA     PGP  A  E  L    AP  A PP PP          G    P PG 
Sbjct: 745 GHKGSKGA-----PGPAGARGESGLAG--APGPAGPPGPP----------GPPGPPGPGL 787

Query: 197 PAG--PRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
           PAG    E       S  R A G   P   PG +GDP
Sbjct: 788 PAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDP 824



 Score = 32.7 bits (73), Expect = 0.27
 Identities = 48/169 (28%), Positives = 61/169 (36%), Gaps = 25/169 (14%)

Query: 72  PPEEPAPAIAPGGSGGGGGG--CGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRR 129
           PP    P +A G S           Q   A   AQ   G+ +    D G VR     ++ 
Sbjct: 457 PPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWD-GSVRTPGGRVKE 515

Query: 130 RRLQRRRGGRGGRGA-GRARKPGPDRAGAERSLPAHRAPRLARPP-VPPSVAHVARASAG 187
             L+ ++G  G  G  GRA  PG              +P L  PP +P  V+ +  A   
Sbjct: 516 GGLKGQKGEPGVPGPPGRAGPPG--------------SPCLPGPPGLPCPVSPLGPAGPA 561

Query: 188 LGARPVPGGPAGP--RESWARRTSSP----PRGAAGGGRPFLHPGGRGD 230
           L   P P GP GP  R+    R   P      G  G   P   PG  GD
Sbjct: 562 LQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGD 610



 Score = 30.8 bits (68), Expect = 1.0
 Identities = 29/91 (31%), Positives = 34/91 (37%), Gaps = 22/91 (24%)

Query: 148 RKPGPDRAGAERSL-----PAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRE 202
           R+  P R G + SL     P H+  + A  P        AR  +GL   P P GP GP  
Sbjct: 725 REGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAG------ARGESGLAGAPGPAGPPGP-- 776

Query: 203 SWARRTSSPPRGAAGGGRP--FLHPGGRGDP 231
                    P G  G G P  F    G G P
Sbjct: 777 -------PGPPGPPGPGLPAGFDDMEGSGGP 800



 Score = 29.3 bits (64), Expect = 3.0
 Identities = 47/198 (23%), Positives = 63/198 (31%), Gaps = 29/198 (14%)

Query: 22   TLGWRMRNSNSRPSSRASAGPG---LCRTEAAAAATRAGAAPATA-ESPDTPEEPPEEPA 77
            +LG+ MR     P      GP    +  +   A ++R G       + P  P+    E  
Sbjct: 1010 SLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVG 1069

Query: 78   PAIAPG--------------GSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAA 123
            P   PG              G  G  G        AG++ +R +  G      FG     
Sbjct: 1070 PPGPPGQFPFDFLQLEAEMKGEKGDRGD-------AGQKGERGEPGGGGF---FGSSLPG 1119

Query: 124  PSGLRRRR-LQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVA 182
            P G    R      G +G    G+   PGP              P    PP PPS     
Sbjct: 1120 PPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPH 1179

Query: 183  RASAGLGARPVPGGPAGP 200
            R +  +   P P GP GP
Sbjct: 1180 RQTISVPGPPGPPGPPGP 1197


>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
          Length = 686

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 47/164 (28%), Positives = 61/164 (37%), Gaps = 7/164 (4%)

Query: 41  GPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAG 100
           GP       A      GAA   AE P+  E   E P  A A   +GGGG   G +  A G
Sbjct: 16  GPPEVPAPLAERPGEPGAAGGEAEGPEGSEGAEEAPRGAAAVKEAGGGGPDRGPEAEARG 75

Query: 101 RR---AQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRG--AGRARKPGPDRA 155
            R    + E   GA   A+        SG   ++++    GRG +G   G A++   D A
Sbjct: 76  TRGAHGETEAEEGAPEGAEVPQGGEETSG--AQQVEGASPGRGAQGEPRGEAQREPEDSA 133

Query: 156 GAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAG 199
             ER   A + P +              A   LG      GPAG
Sbjct: 134 APERQEEAEQRPEVPEGSASGEAGDSVDAEGPLGDNIEAEGPAG 177


>gi|239754474 PREDICTED: similar to mucin [Homo sapiens]
          Length = 417

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 51/201 (25%), Positives = 74/201 (36%), Gaps = 23/201 (11%)

Query: 28  RNSNSRPSSRASAGPGLCRTEAAAAAT----------RAGAAPA-TAESPDTPEEPPEEP 76
           +    +P  R + G G  R   ++ +            A AAPA T+    T +  P++P
Sbjct: 157 KRKRQQPQRRPAGGTGQRRGSGSSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQP 216

Query: 77  APAIAPGGSGGGGGGCGAQHWAAGRRAQ--REQGAGAAVLADFGHVRAAPSGLRRRRLQR 134
                P G  G   G  +   A  +RAQ   E+ A A      GH        + ++ QR
Sbjct: 217 Q--CRPAGGTGQRRGSRSSPSADQQRAQDREEEAAAAPAPTSRGH---RTEKRKPQQPQR 271

Query: 135 RRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVP 194
           R  G  G+  G    P  D+ GA+      R    A  P P S  H       L  +  P
Sbjct: 272 RPAGGTGQRRGSGYSPSADQQGAQ-----DREEEAAAAPAPTSSGHRTEKRKRLQLQCQP 326

Query: 195 GGPAGPRESWARRTSSPPRGA 215
            G  G R      +S+  +GA
Sbjct: 327 AGGTGQRRGSGCSSSANQQGA 347



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 54/208 (25%), Positives = 73/208 (35%), Gaps = 22/208 (10%)

Query: 5   RPMLKSTEPCDELRPMVTLGWRMRNSNSRPSS----------RASAGPGLCRTEAAAAAT 54
           +P+    +P  + +P    G R R S S PS+           A+A P   +  A     
Sbjct: 31  KPLRPQQQP--QCQPAGGTGQR-RGSGSSPSADQQGAQDREEEAAAAPAADQQRAQDREE 87

Query: 55  RAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAA-V 113
            A AAP    S    E+           GG+G   G   +      R   RE+ A AA V
Sbjct: 88  EAAAAPVPTSSGHRTEKRKRLQLQCQPAGGTGQRRGSRSSPSADQQRAQDREEEAAAAPV 147

Query: 114 LADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPP 173
               GH        +R++ QRR  G  G+  G    P  D+ GA+      R    A  P
Sbjct: 148 PTSRGH---RTEKRKRQQPQRRPAGGTGQRRGSGSSPSADQQGAQ-----DREEEAAAAP 199

Query: 174 VPPSVAHVARASAGLGARPVPGGPAGPR 201
            P S  H          +  P G  G R
Sbjct: 200 APTSRGHRTEKRKPQQPQCRPAGGTGQR 227



 Score = 38.1 bits (87), Expect = 0.006
 Identities = 41/152 (26%), Positives = 57/152 (37%), Gaps = 11/152 (7%)

Query: 30  SNSRPSSRASAGPGLCRTEAAAAATRAGAAPA-TAESPDTPEEPPEEPAPAIAPGGSGGG 88
           +  R  SR+S  P   +  A      A AAPA T+    T +  P++P    A G     
Sbjct: 224 TGQRRGSRSS--PSADQQRAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRRPAGGTGQRR 281

Query: 89  GGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRAR 148
           G G        G + + E+ A A      GH        +R+RLQ +    GG G    R
Sbjct: 282 GSGYSPSADQQGAQDREEEAAAAPAPTSSGHRTE-----KRKRLQLQCQPAGGTG---QR 333

Query: 149 KPGPDRAGAERSLPAHRAPRLARPPVPPSVAH 180
           +     + A +     R    A  PVP S  H
Sbjct: 334 RGSGCSSSANQQGAQDREEEAAAAPVPTSSGH 365


>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 650

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 45/162 (27%), Positives = 59/162 (36%), Gaps = 16/162 (9%)

Query: 80  IAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAA---PSGLRRRRLQRRR 136
           +  GG GGG G  GA    + R ++R +       +D      A   P     RR   R 
Sbjct: 153 VGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRA 212

Query: 137 GG---RGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPV 193
           GG   RG R A   ++P   R  +  S     A    RP  P SVA  + A +     P 
Sbjct: 213 GGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPC 272

Query: 194 PGGPAGPRESWARRTSSPPRGAAGGG----------RPFLHP 225
           P    G     +    +P  G+AG G          RPF  P
Sbjct: 273 PHRAGGADGVGSHGARAPGEGSAGSGTERVELGPHVRPFFLP 314



 Score = 36.6 bits (83), Expect = 0.019
 Identities = 53/175 (30%), Positives = 65/175 (37%), Gaps = 44/175 (25%)

Query: 84  GSGGGGGGCGAQHWAAGRR--AQREQGAGAAVLADFG-HVRAAPS-GLRR---------- 129
           G+ GG    G + W +GRR  ++R +G G       G    +APS G+RR          
Sbjct: 62  GNSGGRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAV 121

Query: 130 ------------RRLQRRRGGRG-------GRGAGRARKPGPDRAGAERSLPAHRAPRL- 169
                        +L   R  RG       G GAG     G   AGA  SL    + R+ 
Sbjct: 122 TWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAG-GEGGGEGAAGAASSLSERSSERVE 180

Query: 170 ARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRG---AAGGGRP 221
            +     S   VA      GARP P GP   R  W R     PRG   A G  RP
Sbjct: 181 LQSDTDDSDTRVAE-----GARPRP-GPTSSRRPWGRAGGLRPRGKRPARGKKRP 229


>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
           sapiens]
          Length = 725

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 45/162 (27%), Positives = 59/162 (36%), Gaps = 16/162 (9%)

Query: 80  IAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAA---PSGLRRRRLQRRR 136
           +  GG GGG G  GA    + R ++R +       +D      A   P     RR   R 
Sbjct: 153 VGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRA 212

Query: 137 GG---RGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPV 193
           GG   RG R A   ++P   R  +  S     A    RP  P SVA  + A +     P 
Sbjct: 213 GGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPC 272

Query: 194 PGGPAGPRESWARRTSSPPRGAAGGG----------RPFLHP 225
           P    G     +    +P  G+AG G          RPF  P
Sbjct: 273 PHRAGGADGVGSHGARAPGEGSAGSGTERVELGPHVRPFFLP 314



 Score = 36.6 bits (83), Expect = 0.019
 Identities = 53/175 (30%), Positives = 65/175 (37%), Gaps = 44/175 (25%)

Query: 84  GSGGGGGGCGAQHWAAGRR--AQREQGAGAAVLADFG-HVRAAPS-GLRR---------- 129
           G+ GG    G + W +GRR  ++R +G G       G    +APS G+RR          
Sbjct: 62  GNSGGRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAV 121

Query: 130 ------------RRLQRRRGGRG-------GRGAGRARKPGPDRAGAERSLPAHRAPRL- 169
                        +L   R  RG       G GAG     G   AGA  SL    + R+ 
Sbjct: 122 TWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAG-GEGGGEGAAGAASSLSERSSERVE 180

Query: 170 ARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRG---AAGGGRP 221
            +     S   VA      GARP P GP   R  W R     PRG   A G  RP
Sbjct: 181 LQSDTDDSDTRVAE-----GARPRP-GPTSSRRPWGRAGGLRPRGKRPARGKKRP 229


>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
           sapiens]
          Length = 870

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 62/230 (26%), Positives = 76/230 (33%), Gaps = 45/230 (19%)

Query: 35  SSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAP------------ 82
           SSRAS        E          APA +  P+ P  P E PAP+  P            
Sbjct: 547 SSRASFSSFDTTDEGPVYCVPHEEAPAESRDPEVPTVPAEAPAPSPVPLTTPASAEEAIP 606

Query: 83  ----------GGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRR-- 130
                       S  G GG      A   R  R +   A    + G +  +PS  RR+  
Sbjct: 607 LPASSDSERSASSVEGPGG------ALYARVARREARPARARGEIGGLSLSPSPERRKPP 660

Query: 131 --------RLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVA 182
                   ++    G      AGRA  P P  + A  S P+ R     R P   S AH  
Sbjct: 661 PPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPS-PSKR----KRTPSDKS-AHTV 714

Query: 183 RASAGLGARPVPGGPAGPRESWARRTSSPPRG-AAGGGRPFLHPGGRGDP 231
              +     P P  P  P E+ A    SPPR  A    RP    G R  P
Sbjct: 715 EHGSPRTRDPTPRPPGLPEEATALAAPSPPRARARAAPRPLGAHGRRRSP 764


>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
           sapiens]
          Length = 865

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 62/230 (26%), Positives = 76/230 (33%), Gaps = 45/230 (19%)

Query: 35  SSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAP------------ 82
           SSRAS        E          APA +  P+ P  P E PAP+  P            
Sbjct: 542 SSRASFSSFDTTDEGPVYCVPHEEAPAESRDPEVPTVPAEAPAPSPVPLTTPASAEEAIP 601

Query: 83  ----------GGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRR-- 130
                       S  G GG      A   R  R +   A    + G +  +PS  RR+  
Sbjct: 602 LPASSDSERSASSVEGPGG------ALYARVARREARPARARGEIGGLSLSPSPERRKPP 655

Query: 131 --------RLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVA 182
                   ++    G      AGRA  P P  + A  S P+ R     R P   S AH  
Sbjct: 656 PPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPS-PSKR----KRTPSDKS-AHTV 709

Query: 183 RASAGLGARPVPGGPAGPRESWARRTSSPPRG-AAGGGRPFLHPGGRGDP 231
              +     P P  P  P E+ A    SPPR  A    RP    G R  P
Sbjct: 710 EHGSPRTRDPTPRPPGLPEEATALAAPSPPRARARAAPRPLGAHGRRRSP 759


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
            sapiens]
          Length = 1487

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 61/208 (29%), Positives = 75/208 (36%), Gaps = 22/208 (10%)

Query: 34   PSSRASAG-PGLCRTEAAAAATRAGAAPATAE-SPDTPEEPPEEPAPAIAPGGSGG-GGG 90
            P  R   G PGL     +    + GA  A+ +  P  P  PP    PA  PG  G  G  
Sbjct: 986  PGQRGERGFPGL--PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGAD 1043

Query: 91   GCGAQHWAAGRRAQR-EQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARK 149
            G   +  AAG +  R E GA  A  A        P+G          G +G RG   A+ 
Sbjct: 1044 GPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG--------PTGKQGDRGEAGAQG 1095

Query: 150  P-GPDRAGAERSLPAHRAPR-----LARPPVPPSVAHVARASAGLGARPVPGGPAGPRES 203
            P GP      R +   + PR        P       H  R   GL   P P GP+G + +
Sbjct: 1096 PMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGH--RGFTGLQGLPGPPGPSGDQGA 1153

Query: 204  WARRTSSPPRGAAGGGRPFLHPGGRGDP 231
                  S PRG  G   P    G  G P
Sbjct: 1154 SGPAGPSGPRGPPGPVGPSGKDGANGIP 1181



 Score = 38.1 bits (87), Expect = 0.006
 Identities = 51/210 (24%), Positives = 65/210 (30%), Gaps = 9/210 (4%)

Query: 27  MRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSG 86
           ++  +  P    S GP   R           A  A A   D    P   P P + P G  
Sbjct: 307 VKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGP-VGPAGGP 365

Query: 87  GGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRR----LQRRRGGRGGR 142
           G  G  GA+  A    A+  +GA              P+G         +   +G  G  
Sbjct: 366 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAP 425

Query: 143 G-AGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPR 201
           G AG    PGP      +       P+       P +A   +   G    P P GP G  
Sbjct: 426 GIAGAPGFPGPRGPPGPQGATGPLGPK--GQTGEPGIAGF-KGEQGPKGEPGPAGPQGAP 482

Query: 202 ESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
                      RG  GG  P   PG RG P
Sbjct: 483 GPAGEEGKRGARGEPGGVGPIGPPGERGAP 512



 Score = 37.4 bits (85), Expect = 0.011
 Identities = 55/221 (24%), Positives = 70/221 (31%), Gaps = 19/221 (8%)

Query: 27  MRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEE---------PA 77
           +R    +     +AGP      A     +    P+  +    P  PP E         P 
Sbjct: 628 LRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPG 687

Query: 78  PAIAPG--GSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRR---- 131
            A APG  G  G  G  G +     +  Q  +G       D     + P+G    +    
Sbjct: 688 EAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPG 747

Query: 132 LQRRRGGRGGRG-AGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGA 190
           LQ   G RG  G AG     G          P     R    P+ P     A    G   
Sbjct: 748 LQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVG 807

Query: 191 RPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
            P P G AG R +   R  + P G AG   P   PG  G P
Sbjct: 808 PPGPAGSAGARGAPGERGETGPPGPAGFAGP---PGADGQP 845



 Score = 35.8 bits (81), Expect = 0.032
 Identities = 55/203 (27%), Positives = 61/203 (30%), Gaps = 32/203 (15%)

Query: 42  PGLCRTEAAAAA-----TRAGAAPATAESPDTPEEPPEEPAPAIAPGGSG-GGGGGCGAQ 95
           PGL    AA  A        GA     + P  P  P   P PA APG  G  G  G   +
Sbjct: 173 PGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGE 232

Query: 96  HWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGA-------GRAR 148
              +G    R          D G     P     R     +G RG  G        G   
Sbjct: 233 PGVSGPMGPRGPPGPPGKPGDDGEA-GKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRG 291

Query: 149 KPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRT 208
            PG D A  E   P  +                   S G    P   GP GPR     R 
Sbjct: 292 YPGLDGAKGEAGAPGVKG---------------ESGSPGENGSP---GPMGPRGLPGERG 333

Query: 209 SSPPRGAAGGGRPFLHPGGRGDP 231
            + P GAAG       PG  G P
Sbjct: 334 RTGPAGAAGARGNDGQPGPAGPP 356



 Score = 35.0 bits (79), Expect = 0.054
 Identities = 48/179 (26%), Positives = 57/179 (31%), Gaps = 14/179 (7%)

Query: 56  AGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLA 115
           AG+A A     +  E  P  PA    P G+ G  G  G Q    G   Q+          
Sbjct: 812 AGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQ----GEAGQKGDAGAPGPQG 867

Query: 116 DFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVP 175
             G    AP       +   +G RG +G   A    P  AG      ++  P    PP P
Sbjct: 868 PSG----APGPQGPTGVTGPKGARGAQGPPGA-TGFPGAAGRVGPPGSNGNPGPPGPPGP 922

Query: 176 -----PSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRG 229
                P  A       G    P   GPAGP           P GA G   P    G RG
Sbjct: 923 SGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 981


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
            sapiens]
          Length = 1418

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 61/208 (29%), Positives = 75/208 (36%), Gaps = 22/208 (10%)

Query: 34   PSSRASAG-PGLCRTEAAAAATRAGAAPATAE-SPDTPEEPPEEPAPAIAPGGSGG-GGG 90
            P  R   G PGL     +    + GA  A+ +  P  P  PP    PA  PG  G  G  
Sbjct: 917  PGQRGERGFPGL--PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGAD 974

Query: 91   GCGAQHWAAGRRAQR-EQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARK 149
            G   +  AAG +  R E GA  A  A        P+G          G +G RG   A+ 
Sbjct: 975  GPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG--------PTGKQGDRGEAGAQG 1026

Query: 150  P-GPDRAGAERSLPAHRAPR-----LARPPVPPSVAHVARASAGLGARPVPGGPAGPRES 203
            P GP      R +   + PR        P       H  R   GL   P P GP+G + +
Sbjct: 1027 PMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGH--RGFTGLQGLPGPPGPSGDQGA 1084

Query: 204  WARRTSSPPRGAAGGGRPFLHPGGRGDP 231
                  S PRG  G   P    G  G P
Sbjct: 1085 SGPAGPSGPRGPPGPVGPSGKDGANGIP 1112



 Score = 38.1 bits (87), Expect = 0.006
 Identities = 51/210 (24%), Positives = 65/210 (30%), Gaps = 9/210 (4%)

Query: 27  MRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSG 86
           ++  +  P    S GP   R           A  A A   D    P   P P + P G  
Sbjct: 238 VKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGP-VGPAGGP 296

Query: 87  GGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRR----LQRRRGGRGGR 142
           G  G  GA+  A    A+  +GA              P+G         +   +G  G  
Sbjct: 297 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAP 356

Query: 143 G-AGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPR 201
           G AG    PGP      +       P+       P +A   +   G    P P GP G  
Sbjct: 357 GIAGAPGFPGPRGPPGPQGATGPLGPK--GQTGEPGIAGF-KGEQGPKGEPGPAGPQGAP 413

Query: 202 ESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
                      RG  GG  P   PG RG P
Sbjct: 414 GPAGEEGKRGARGEPGGVGPIGPPGERGAP 443



 Score = 37.4 bits (85), Expect = 0.011
 Identities = 55/221 (24%), Positives = 70/221 (31%), Gaps = 19/221 (8%)

Query: 27  MRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEE---------PA 77
           +R    +     +AGP      A     +    P+  +    P  PP E         P 
Sbjct: 559 LRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPG 618

Query: 78  PAIAPG--GSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRR---- 131
            A APG  G  G  G  G +     +  Q  +G       D     + P+G    +    
Sbjct: 619 EAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPG 678

Query: 132 LQRRRGGRGGRG-AGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGA 190
           LQ   G RG  G AG     G          P     R    P+ P     A    G   
Sbjct: 679 LQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVG 738

Query: 191 RPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRGDP 231
            P P G AG R +   R  + P G AG   P   PG  G P
Sbjct: 739 PPGPAGSAGARGAPGERGETGPPGPAGFAGP---PGADGQP 776



 Score = 35.8 bits (81), Expect = 0.032
 Identities = 55/203 (27%), Positives = 61/203 (30%), Gaps = 32/203 (15%)

Query: 42  PGLCRTEAAAAA-----TRAGAAPATAESPDTPEEPPEEPAPAIAPGGSG-GGGGGCGAQ 95
           PGL    AA  A        GA     + P  P  P   P PA APG  G  G  G   +
Sbjct: 104 PGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGE 163

Query: 96  HWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGA-------GRAR 148
              +G    R          D G     P     R     +G RG  G        G   
Sbjct: 164 PGVSGPMGPRGPPGPPGKPGDDGEA-GKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRG 222

Query: 149 KPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRT 208
            PG D A  E   P  +                   S G    P   GP GPR     R 
Sbjct: 223 YPGLDGAKGEAGAPGVKG---------------ESGSPGENGSP---GPMGPRGLPGERG 264

Query: 209 SSPPRGAAGGGRPFLHPGGRGDP 231
            + P GAAG       PG  G P
Sbjct: 265 RTGPAGAAGARGNDGQPGPAGPP 287



 Score = 35.0 bits (79), Expect = 0.054
 Identities = 48/179 (26%), Positives = 57/179 (31%), Gaps = 14/179 (7%)

Query: 56  AGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLA 115
           AG+A A     +  E  P  PA    P G+ G  G  G Q    G   Q+          
Sbjct: 743 AGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQ----GEAGQKGDAGAPGPQG 798

Query: 116 DFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVP 175
             G    AP       +   +G RG +G   A    P  AG      ++  P    PP P
Sbjct: 799 PSG----APGPQGPTGVTGPKGARGAQGPPGA-TGFPGAAGRVGPPGSNGNPGPPGPPGP 853

Query: 176 -----PSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGRG 229
                P  A       G    P   GPAGP           P GA G   P    G RG
Sbjct: 854 SGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 912


>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 447

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 35/99 (35%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 131 RLQRRRGGRGGRGAGRARKPG-PDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLG 189
           R  R   G  G G+G   +P  P RA A RS P+ R PR  +      V   ARA AG  
Sbjct: 278 RAPRTSAGLAGVGSGAPGEPAEPGRARAPRSAPSSREPRQTKR----RVGSRARAGAGAV 333

Query: 190 ARPVPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGR 228
             P P    G R SW      P  G A    P   P  R
Sbjct: 334 TGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPR 372



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 60/208 (28%), Positives = 76/208 (36%), Gaps = 33/208 (15%)

Query: 16  ELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEE 75
           EL   +T G R  ++  + S   + G   C     + A      P  A+ P  P   P+ 
Sbjct: 218 ELLFAITSGERAASAPRQESHNFAKG---CAEFYGSGARAQPGGPCWAQGP--PGRLPDP 272

Query: 76  -PAPAIAPGGSGG-GGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQ 133
            P P  AP  S G  G G GA    A      E G   A        R+APS    R+ +
Sbjct: 273 IPLPTRAPRTSAGLAGVGSGAPGEPA------EPGRARAP-------RSAPSSREPRQTK 319

Query: 134 RRRGGRGGRGAGRARKPGPDRA-GAERSLPAHR---APRLARPPVPPSVAHVARASAGLG 189
           RR G R   GAG    P P  A GA  S P+ R   +   AR   P S  H  R +    
Sbjct: 320 RRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPA---- 375

Query: 190 ARPVPGGPAGPRESWARRTSSPPRGAAG 217
                G P    +   RR+  P     G
Sbjct: 376 -----GSPPALADREGRRSLVPQTSIQG 398


>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 113

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 133 QRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARP 192
           +R R   GG G+G+A++PGP R G+ R  P  + P  A P  PP+    A   +G G   
Sbjct: 14  ERARAPSGG-GSGQAQRPGPGR-GSWRRPPRRQRPGPAAPS-PPARGAAAWGRSGGGPAA 70

Query: 193 VPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGR 228
             GG  G      RR  + P G  GGG     PGGR
Sbjct: 71  QSGGDGG---GLPRRAGAEP-GGRGGGSGGTMPGGR 102



 Score = 35.0 bits (79), Expect = 0.054
 Identities = 28/79 (35%), Positives = 30/79 (37%), Gaps = 11/79 (13%)

Query: 25  WRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGG 84
           WR      RP   A + P       AAA  R+G  PA     D    P    A    PGG
Sbjct: 37  WRRPPRRQRPGPAAPSPPA----RGAAAWGRSGGGPAAQSGGDGGGLPRRAGAE---PGG 89

Query: 85  SGGGGGGCGAQHWAAGRRA 103
            GGG GG        GRRA
Sbjct: 90  RGGGSGGT----MPGGRRA 104


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,532,077
Number of Sequences: 37866
Number of extensions: 958494
Number of successful extensions: 16233
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 1477
Number of HSP's that attempted gapping in prelim test: 9299
Number of HSP's gapped (non-prelim): 6113
length of query: 231
length of database: 18,247,518
effective HSP length: 99
effective length of query: 132
effective length of database: 14,498,784
effective search space: 1913839488
effective search space used: 1913839488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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