Search of human proteins with 239742932

Search of human proteins with 239742932

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742932 PREDICTED: hypothetical protein XP_002342691 [Homo
sapiens]
         (165 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754361 PREDICTED: hypothetical protein [Homo sapiens]           347   4e-96
gi|239748908 PREDICTED: hypothetical protein XP_002346853 [Homo ...   347   4e-96
gi|239742932 PREDICTED: hypothetical protein XP_002342691 [Homo ...   347   4e-96
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]           42   2e-04
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]           42   2e-04
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]           42   2e-04
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]            42   3e-04
gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo ...    41   5e-04
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]            41   5e-04
gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo ...    41   5e-04
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap...    40   0.001
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|41281612 zinc finger protein 828 [Homo sapiens]                     39   0.002
gi|38679909 testis expressed sequence 2 [Homo sapiens]                 38   0.003
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi...    37   0.006
gi|171543895 ataxin 2 [Homo sapiens]                                   37   0.006
gi|58761548 tau tubulin kinase 1 [Homo sapiens]                        37   0.006
gi|24307909 ral guanine nucleotide dissociation stimulator isofo...    37   0.006
gi|108796058 ral guanine nucleotide dissociation stimulator isof...    37   0.006
gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo ...    37   0.008
gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo ...    37   0.008
gi|117938759 GNAS complex locus XLas [Homo sapiens]                    37   0.010
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]                36   0.013
gi|239755172 PREDICTED: hypothetical protein [Homo sapiens]            36   0.017
gi|239749673 PREDICTED: hypothetical protein XP_002347141 [Homo ...    36   0.017
gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo sap...    36   0.017
gi|239743940 PREDICTED: hypothetical protein XP_002342994 [Homo ...    36   0.017
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]       35   0.023
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    35   0.023
gi|154146199 sal-like 3 [Homo sapiens]                                 35   0.023

>gi|239754361 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 165

 Score =  347 bits (889), Expect = 4e-96
 Identities = 165/165 (100%), Positives = 165/165 (100%)

Query: 1   MSHRNRKLSDINSEEEQKLNPFPGKEQHQPLCIPPIKVKDLLKFSISLHILGVSGAAADS 60
           MSHRNRKLSDINSEEEQKLNPFPGKEQHQPLCIPPIKVKDLLKFSISLHILGVSGAAADS
Sbjct: 1   MSHRNRKLSDINSEEEQKLNPFPGKEQHQPLCIPPIKVKDLLKFSISLHILGVSGAAADS 60

Query: 61  SRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPAPSRTHL 120
           SRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPAPSRTHL
Sbjct: 61  SRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPAPSRTHL 120

Query: 121 GHVITQCHVRRGHVPGALARRRARTKGPMGKIWGWGEWRERARGR 165
           GHVITQCHVRRGHVPGALARRRARTKGPMGKIWGWGEWRERARGR
Sbjct: 121 GHVITQCHVRRGHVPGALARRRARTKGPMGKIWGWGEWRERARGR 165


>gi|239748908 PREDICTED: hypothetical protein XP_002346853 [Homo
           sapiens]
          Length = 165

 Score =  347 bits (889), Expect = 4e-96
 Identities = 165/165 (100%), Positives = 165/165 (100%)

Query: 1   MSHRNRKLSDINSEEEQKLNPFPGKEQHQPLCIPPIKVKDLLKFSISLHILGVSGAAADS 60
           MSHRNRKLSDINSEEEQKLNPFPGKEQHQPLCIPPIKVKDLLKFSISLHILGVSGAAADS
Sbjct: 1   MSHRNRKLSDINSEEEQKLNPFPGKEQHQPLCIPPIKVKDLLKFSISLHILGVSGAAADS 60

Query: 61  SRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPAPSRTHL 120
           SRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPAPSRTHL
Sbjct: 61  SRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPAPSRTHL 120

Query: 121 GHVITQCHVRRGHVPGALARRRARTKGPMGKIWGWGEWRERARGR 165
           GHVITQCHVRRGHVPGALARRRARTKGPMGKIWGWGEWRERARGR
Sbjct: 121 GHVITQCHVRRGHVPGALARRRARTKGPMGKIWGWGEWRERARGR 165


>gi|239742932 PREDICTED: hypothetical protein XP_002342691 [Homo
           sapiens]
          Length = 165

 Score =  347 bits (889), Expect = 4e-96
 Identities = 165/165 (100%), Positives = 165/165 (100%)

Query: 1   MSHRNRKLSDINSEEEQKLNPFPGKEQHQPLCIPPIKVKDLLKFSISLHILGVSGAAADS 60
           MSHRNRKLSDINSEEEQKLNPFPGKEQHQPLCIPPIKVKDLLKFSISLHILGVSGAAADS
Sbjct: 1   MSHRNRKLSDINSEEEQKLNPFPGKEQHQPLCIPPIKVKDLLKFSISLHILGVSGAAADS 60

Query: 61  SRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPAPSRTHL 120
           SRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPAPSRTHL
Sbjct: 61  SRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPAPSRTHL 120

Query: 121 GHVITQCHVRRGHVPGALARRRARTKGPMGKIWGWGEWRERARGR 165
           GHVITQCHVRRGHVPGALARRRARTKGPMGKIWGWGEWRERARGR
Sbjct: 121 GHVITQCHVRRGHVPGALARRRARTKGPMGKIWGWGEWRERARGR 165


>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 20/92 (21%)

Query: 68  PVPGSPAAVAPAPGAARPGAAAPR-------RSRLRRNSTSPAR----PLRPPSSHPAPS 116
           P+P   AA AP PG   P A  P        R R     + PA+    PL  P+  PAP 
Sbjct: 199 PLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPP 258

Query: 117 RTHLGHVITQCHVRRGHVPGALARRRARTKGP 148
              L         R G  PG+ A RR R + P
Sbjct: 259 APEL---------REGRAPGSTAGRRPRPREP 281


>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 20/92 (21%)

Query: 68  PVPGSPAAVAPAPGAARPGAAAPR-------RSRLRRNSTSPAR----PLRPPSSHPAPS 116
           P+P   AA AP PG   P A  P        R R     + PA+    PL  P+  PAP 
Sbjct: 199 PLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPP 258

Query: 117 RTHLGHVITQCHVRRGHVPGALARRRARTKGP 148
              L         R G  PG+ A RR R + P
Sbjct: 259 APEL---------REGRAPGSTAGRRPRPREP 281


>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 20/92 (21%)

Query: 68  PVPGSPAAVAPAPGAARPGAAAPR-------RSRLRRNSTSPAR----PLRPPSSHPAPS 116
           P+P   AA AP PG   P A  P        R R     + PA+    PL  P+  PAP 
Sbjct: 199 PLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPP 258

Query: 117 RTHLGHVITQCHVRRGHVPGALARRRARTKGP 148
              L         R G  PG+ A RR R + P
Sbjct: 259 APEL---------REGRAPGSTAGRRPRPREP 281


>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 66  PRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPAPSRTHLGHVIT 125
           PR  P  PAA +P P  ARP +  PR S      + P RP+ PPS+  AP R  L   + 
Sbjct: 102 PRGAPAVPAAPSPGPLPARPSSPPPRPSL----PSGPHRPVLPPSALAAP-RPPLARPLP 156

Query: 126 QCHV-RRGHVPGALARRRARTKGPMGKI 152
           Q  V  R       +RRRA     +G +
Sbjct: 157 QGSVTAREQEQRPRSRRRAGAPEALGPV 184



 Score = 28.1 bits (61), Expect = 3.6
 Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 53  VSGAAADSSRWPLPRPVPGSPAAVA-PAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSS 111
           +S  AA   R   P P  G    +A P P A +P   AP           PARP  PP  
Sbjct: 69  LSALAAAQPRRRSPGPQGGGGGDIASPLPPALQP-RGAPAVPAAPSPGPLPARPSSPPPR 127

Query: 112 HPAPSRTH 119
              PS  H
Sbjct: 128 PSLPSGPH 135



 Score = 26.9 bits (58), Expect = 8.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 64  PLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLR 107
           P P  V      + PAP AA P A   R +  R ++ + A+P R
Sbjct: 36  PGPALVVAGLDGIRPAPAAAHPPAPRERPAAARLSALAAAQPRR 79


>gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo
           sapiens]
          Length = 408

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 46/139 (33%), Positives = 57/139 (41%), Gaps = 30/139 (21%)

Query: 16  EQKLNPFPGKEQHQPLCI---PPIKVKDLLKFSISLHILGVSGAAADSSRWPLPRPV-PG 71
           E  L P  G      LC+    P+  +     S  L  +   GA   SSR  L RPV P 
Sbjct: 2   ELLLQPVNGLVTKSQLCLWSREPVPSRQAAP-SKRLESVSFPGAHEMSSR-SLARPVSPS 59

Query: 72  SPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPAPSRTHLGHVITQCHVRR 131
           +P ++AP    ARPGA  PR          P RPL P +  P P R            R+
Sbjct: 60  APRSIAP----ARPGARPPR----------PGRPLAPRARQPVPHR---------AVPRQ 96

Query: 132 GHVPGALARRRARTKGPMG 150
           G +   L  RR R +GP G
Sbjct: 97  GSLREPLPSRRGR-RGPPG 114


>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 285

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 32/86 (37%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 66  PRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPAPSRTHLGHVIT 125
           PR  P  PAA +P P  ARP +  PR S      + P RP+ PPS+  AP R  L   + 
Sbjct: 102 PRGAPAVPAAPSPGPLPARPSSPPPRPSL----PSGPHRPVLPPSALAAP-RPPLARPLP 156

Query: 126 QCHV-RRGHVPGALARRRARTKGPMG 150
           Q  V  R       +RRRA     +G
Sbjct: 157 QGSVTAREQEQRPRSRRRAGAPEALG 182



 Score = 28.1 bits (61), Expect = 3.6
 Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 53  VSGAAADSSRWPLPRPVPGSPAAVA-PAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSS 111
           +S  AA   R   P P  G    +A P P A +P   AP           PARP  PP  
Sbjct: 69  LSALAAAQPRRRSPGPQGGGGGDIASPLPPALQP-RGAPAVPAAPSPGPLPARPSSPPPR 127

Query: 112 HPAPSRTH 119
              PS  H
Sbjct: 128 PSLPSGPH 135



 Score = 26.9 bits (58), Expect = 8.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 64  PLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLR 107
           P P  V      + PAP AA P A   R +  R ++ + A+P R
Sbjct: 36  PGPALVVAGLDGIRPAPAAAHPPAPRERPAAARLSALAAAQPRR 79


>gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo
           sapiens]
          Length = 408

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 46/139 (33%), Positives = 57/139 (41%), Gaps = 30/139 (21%)

Query: 16  EQKLNPFPGKEQHQPLCI---PPIKVKDLLKFSISLHILGVSGAAADSSRWPLPRPV-PG 71
           E  L P  G      LC+    P+  +     S  L  +   GA   SSR  L RPV P 
Sbjct: 2   ELLLQPVNGLVTKSQLCLWSREPVPSRQAAP-SKRLESVSFPGAHEMSSR-SLARPVSPS 59

Query: 72  SPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPAPSRTHLGHVITQCHVRR 131
           +P ++AP    ARPGA  PR          P RPL P +  P P R            R+
Sbjct: 60  APRSIAP----ARPGARPPR----------PGRPLAPRARQPVPHR---------AVPRQ 96

Query: 132 GHVPGALARRRARTKGPMG 150
           G +   L  RR R +GP G
Sbjct: 97  GSLREPLPSRRGR-RGPPG 114


>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
           sapiens]
          Length = 288

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 52  GVSGAAADSSRWPLPRPVPGSPAAVAPA---PGAARPGAAAPRRSRLRRNSTSPARPL-- 106
           G S A+  ++  P   P   SPAA AP    P AA   AAAP  + ++  + SPA PL  
Sbjct: 205 GPSAASLCAASQPAAVPAAASPAAAAPLAVNPAAAARAAAAPAAACVQSVAESPATPLAI 264

Query: 107 -RPPSSHPAP 115
            +P S  PAP
Sbjct: 265 AQPVSFPPAP 274



 Score = 31.2 bits (69), Expect = 0.43
 Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 68  PVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPAP 115
           P   SPAAVAPA  A  PGAA P  + L   S   A P     +  AP
Sbjct: 186 PAAASPAAVAPA--AVCPGAAGPSAASLCAASQPAAVPAAASPAAAAP 231



 Score = 28.1 bits (61), Expect = 3.6
 Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 32/129 (24%)

Query: 1   MSHRNRKLSDINSEEEQKL----------NPFPGKEQHQPLCIPPIKVKDLLKFSISLHI 50
           MSH  ++L   ++E +++           N +P      P+ +P          S     
Sbjct: 44  MSHDTQRLKSCDTETKERKTRGDSCGNTRNLYPLTPWSAPVVVP----------SALTRA 93

Query: 51  LGVSGAAADSSRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARP----- 105
           +    AAA ++  P   P  G PAA   AP A  P AA P  + L   S   A P     
Sbjct: 94  VAWRPAAAPAAVRP---PAAGPPAA---APAAVCPAAADPSAASLCAASPPAAVPAAVPA 147

Query: 106 -LRPPSSHP 113
            +RPP++ P
Sbjct: 148 AVRPPAAGP 156


>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 251

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 45/152 (29%), Positives = 53/152 (34%), Gaps = 51/152 (33%)

Query: 58  ADSSRWPL--PRPVPGSPAAVAPAPGA--ARPGAAAPRRSRLRRNSTSPAR--------- 104
           A S R PL  PRP PG   +  PA GA  + P AA P R  LR  + +P R         
Sbjct: 36  ARSPRPPLCAPRPAPGRAQSPVPAAGAVPSPPAAAHPARPALRGETPAPGRRGRATTRGE 95

Query: 105 ---PLRPPSSH--------------------------PAP---SRTHLGHVITQCHVRRG 132
               +RPP SH                          PAP    RT L  + T      G
Sbjct: 96  VQPSVRPPLSHRPLRGGGMGRGRPGKGPPPNPSRRLPPAPPGGRRTWLSALAT------G 149

Query: 133 HVPGALARRRARTKGPMGKIWGWGEWRERARG 164
              G   RRR          WG+G   +  RG
Sbjct: 150 PAAGGAGRRRRSPPVFRAADWGFGRSEQHLRG 181


>gi|41281612 zinc finger protein 828 [Homo sapiens]
          Length = 812

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 34/105 (32%), Positives = 40/105 (38%), Gaps = 14/105 (13%)

Query: 15  EEQKLNPFPGKEQHQPLCIPPIKVKDLL---KFSISLHILGVSGAAADSSRWPLPRPVPG 71
           E QKL P P  E  +P  + P  VK  L   K     H     G  + SS        P 
Sbjct: 195 ESQKLAPVPSPEPQKPAPVSPESVKATLSNPKPQKQSHFPETLGPPSASS--------PE 246

Query: 72  SPA-AVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPAP 115
           SP  A +P P    P A+   R   R  S  P +P   PS  P P
Sbjct: 247 SPVLAASPEPWGPSPAASPESRKSARTTSPEPRKP--SPSESPEP 289



 Score = 27.3 bits (59), Expect = 6.2
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 18/111 (16%)

Query: 13  SEEEQKLNPFPGKEQHQPLCIPPIKVKDLLKFSISLHILGVSGAAADSSRWPLPRPVPGS 72
           S E QKL      E  +P  + P++ +                  +   + PLP P P  
Sbjct: 131 SMETQKLGSVLSPESPKPTPLTPLEPQK------------PGSVVSPELQTPLPSPEPSK 178

Query: 73  PAAV-APAPGAARPGAAAPRRSRLRRNSTSPARPLRPPS-----SHPAPSR 117
           PA+V +P P  + P   + + + +         P+ P S     S+P P +
Sbjct: 179 PASVSSPEPPKSVPVCESQKLAPVPSPEPQKPAPVSPESVKATLSNPKPQK 229



 Score = 27.3 bits (59), Expect = 6.2
 Identities = 41/158 (25%), Positives = 57/158 (36%), Gaps = 53/158 (33%)

Query: 5   NRKLSDINSEEEQK-------------LNPFPGKEQHQPLCIPPIKVK--DLLKFSISLH 49
           ++KL+ + S E QK              NP P K+ H P  + P      +    + S  
Sbjct: 196 SQKLAPVPSPEPQKPAPVSPESVKATLSNPKPQKQSHFPETLGPPSASSPESPVLAASPE 255

Query: 50  ILGVSGAAADSSR------------------------WPLPRPVPGSPA-AVAPA----- 79
             G S AA+  SR                        +P   P P  PA AV+P      
Sbjct: 256 PWGPSPAASPESRKSARTTSPEPRKPSPSESPEPWKPFPAVSPEPRRPAPAVSPGSWKPG 315

Query: 80  -PGAARPGAAAPRRSRLRRNSTSPARPLRP-PSSHPAP 115
            PG+ RP  + P        S+ P +P +P PS  P P
Sbjct: 316 PPGSPRPWKSNPSA------SSGPWKPAKPAPSVSPGP 347


>gi|38679909 testis expressed sequence 2 [Homo sapiens]
          Length = 1134

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 8   LSDINSEEEQKLNPFPGKEQHQPLCIPPIKVKDLLKFSISLHILGVSGAAADSSRWPLP- 66
           ++ + ++E+  L P  G +   P   P +   D L  S +  IL VS         P+P 
Sbjct: 66  VTGLEAKEDLYLEPQVGHDPAGPAASPVLA--DGLSVSQAPAILPVSKNTVKLLESPVPA 123

Query: 67  -RPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHP 113
            + +   P AV+P   ++ P A++P  S L    TS + PL  PS  P
Sbjct: 124 AQVLSTVPLAVSPGSSSSGPLASSPSVSSLSEQKTSSSSPLSSPSKSP 171


>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
           sapiens]
          Length = 729

 Score = 37.4 bits (85), Expect = 0.006
 Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 14/77 (18%)

Query: 54  SGAAADSSRWP-LPRPVPGSPAAVAPA------------PGAARPGAAAPRRSRLRRN-S 99
           +GA +  S  P  P+P P  P   AP             P  A P A APRRS + R   
Sbjct: 304 AGAVSTGSSSPGTPQPAPQLPLNAAPPSSVPPVPPSEALPPPACPSAPAPRRSIISRLFG 363

Query: 100 TSPARPLRPPSSHPAPS 116
           TSPA    PP   P P+
Sbjct: 364 TSPATEAAPPPPEPVPA 380


>gi|171543895 ataxin 2 [Homo sapiens]
          Length = 1313

 Score = 37.4 bits (85), Expect = 0.006
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 63  WPLPRPVPGS--PAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPA 114
           WP P P P S  P+     P +  P AA P R      S  P+RP RPP SHP+
Sbjct: 552 WPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRP----PSRPPSRPSRPP-SHPS 600


>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
          Length = 1321

 Score = 37.4 bits (85), Expect = 0.006
 Identities = 37/100 (37%), Positives = 47/100 (47%), Gaps = 10/100 (10%)

Query: 55   GAAADSSRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRL-RRNSTSP---ARPLRPPS 110
            G A   +R P PR  P  PA+ +    AAR  +A+PR   L RR S SP   ARP  PP 
Sbjct: 1219 GRAQAGARPPAPRS-PRLPASTS----AARNASASPRSQSLSRRESPSPSHQARPGVPPP 1273

Query: 111  SHPAPSRTHLGHVITQCHVRRGHVPGALARRRARTKGPMG 150
                P+R       +    ++G   G L  +RA TKG  G
Sbjct: 1274 RGVPPARAQPDGTPSPGGSKKG-PRGKLQAQRATTKGRAG 1312


>gi|24307909 ral guanine nucleotide dissociation stimulator isoform
           1 [Homo sapiens]
          Length = 914

 Score = 37.4 bits (85), Expect = 0.006
 Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 64  PLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRP-PSSHPAPSRT 118
           P P P PGS   VAPAP  A     AP  +    ++ +PA  L P P   PAPS+T
Sbjct: 295 PAPTPAPGSELEVAPAP--APELQQAPEPAVGLESAPAPALELEPAPEQDPAPSQT 348


>gi|108796058 ral guanine nucleotide dissociation stimulator isoform
           2 [Homo sapiens]
          Length = 859

 Score = 37.4 bits (85), Expect = 0.006
 Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 64  PLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRP-PSSHPAPSRT 118
           P P P PGS   VAPAP  A     AP  +    ++ +PA  L P P   PAPS+T
Sbjct: 240 PAPTPAPGSELEVAPAP--APELQQAPEPAVGLESAPAPALELEPAPEQDPAPSQT 293


>gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo
           sapiens]
          Length = 144

 Score = 37.0 bits (84), Expect = 0.008
 Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 18/84 (21%)

Query: 65  LPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARP----LRPPSSHPAP----- 115
           LP P PGS  ++  APG   P A A RR+        PA P    LR   +HP P     
Sbjct: 55  LPAPPPGSRVSLGSAPGRPPPPALAARRA-------PPAPPVLIQLRGGDAHPPPAFSRA 107

Query: 116 --SRTHLGHVITQCHVRRGHVPGA 137
             S   L H    C +   H PGA
Sbjct: 108 RSSGALLEHPGATCALLSRHGPGA 131


>gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo
           sapiens]
          Length = 144

 Score = 37.0 bits (84), Expect = 0.008
 Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 18/84 (21%)

Query: 65  LPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARP----LRPPSSHPAP----- 115
           LP P PGS  ++  APG   P A A RR+        PA P    LR   +HP P     
Sbjct: 55  LPAPPPGSRVSLGSAPGRPPPPALAARRA-------PPAPPVLIQLRGGDAHPPPAFSRA 107

Query: 116 --SRTHLGHVITQCHVRRGHVPGA 137
             S   L H    C +   H PGA
Sbjct: 108 RSSGALLEHPGATCALLSRHGPGA 131


>gi|117938759 GNAS complex locus XLas [Homo sapiens]
          Length = 1037

 Score = 36.6 bits (83), Expect = 0.010
 Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 54  SGAAADSSRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHP 113
           SGAA D+   P     P +PA   P  GAA    AAP  +  R    +PA P     + P
Sbjct: 443 SGAAPDAPADPDSGAAPDAPAD--PDAGAAPEAPAAPAAAETRAAHVAPAAPDAGAPTAP 500

Query: 114 APSRTHLGHVITQCHVRRGHVPGALARRRARTKGPMGKI 152
           A S T    V           P + ARR+   + P  +I
Sbjct: 501 AASATRAAQVRRAASA----APASGARRKIHLRPPSPEI 535



 Score = 26.9 bits (58), Expect = 8.0
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 53  VSGAAADSSRWPLPRPVPGSPAA-VAPAPGAARPGAAAP 90
           + GAA  +    +P P  GSPAA  A A  AAR   AAP
Sbjct: 361 MEGAADAAEGGKVPSPGYGSPAAGAASADTAARAAPAAP 399


>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
          Length = 2017

 Score = 36.2 bits (82), Expect = 0.013
 Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 10/54 (18%)

Query: 64   PLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARP-LRPPSSHPAPS 116
            P PRPVPGSPA  APA G+   G  +P        ST    P  +PPS  PA S
Sbjct: 1452 PAPRPVPGSPARDAPAEGSGE-GLNSP--------STLECSPGSQPPSPGPATS 1496


>gi|239755172 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 265

 Score = 35.8 bits (81), Expect = 0.017
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 51  LGVSGAAADSSRWP-LPRPVPGSPA-AVAPAPGAARPGAAAPRRSRLRRNS 99
           +GVS   A +   P LP PVPG PA + +  PGA+ P  AA   + LRR S
Sbjct: 131 MGVSSTGATAGPPPPLPPPVPGPPAPSSSVGPGASPPSTAARTWATLRRTS 181


>gi|239749673 PREDICTED: hypothetical protein XP_002347141 [Homo
           sapiens]
          Length = 295

 Score = 35.8 bits (81), Expect = 0.017
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 51  LGVSGAAADSSRWP-LPRPVPGSPA-AVAPAPGAARPGAAAPRRSRLRRNS 99
           +GVS   A +   P LP PVPG PA + +  PGA+ P  AA   + LRR S
Sbjct: 161 MGVSSTGATAGPPPPLPPPVPGPPAPSSSVGPGASPPSTAARTWATLRRTS 211


>gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo
           sapiens]
          Length = 254

 Score = 35.8 bits (81), Expect = 0.017
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 6/55 (10%)

Query: 68  PVPGSPAAVAPA---PGAARPGAAAPRRSRLRRNSTSPARPL---RPPSSHPAPS 116
           P   +PAA +PA   P A  P AAAP  + ++  + SPA PL   +P SS  AP+
Sbjct: 141 PTAAAPAAASPAAAAPLAVNPAAAAPAAACVQSVAESPATPLAIAQPVSSPAAPA 195



 Score = 28.9 bits (63), Expect = 2.1
 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 47  SLHILGVSGAAADSSRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPL 106
           SL        A  + R P       SPAAVAPA  A  P AA+P  + L   S + A P 
Sbjct: 90  SLRAANPLAVAPAAVRRPAATLGAASPAAVAPA--AVCPAAASPSAASLCAASPTAAAPA 147

Query: 107 RPPSSHPAP 115
               +  AP
Sbjct: 148 AASPAAAAP 156


>gi|239743940 PREDICTED: hypothetical protein XP_002342994 [Homo
           sapiens]
          Length = 295

 Score = 35.8 bits (81), Expect = 0.017
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 51  LGVSGAAADSSRWP-LPRPVPGSPA-AVAPAPGAARPGAAAPRRSRLRRNS 99
           +GVS   A +   P LP PVPG PA + +  PGA+ P  AA   + LRR S
Sbjct: 161 MGVSSTGATAGPPPPLPPPVPGPPAPSSSVGPGASPPSTAARTWATLRRTS 211


>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
          Length = 1006

 Score = 35.4 bits (80), Expect = 0.023
 Identities = 38/105 (36%), Positives = 43/105 (40%), Gaps = 11/105 (10%)

Query: 58  ADSSRWPLPRPVPGS-PAAVAPAP-----GAARPGAAAPRRSRLRRNSTSPARPLRPPSS 111
           A SS WP P+  PG+ P   AP P      A RPG  +P   R R    SP     P   
Sbjct: 323 APSSEWPGPQRSPGTGPRWTAPLPRPAPLPAKRPG-DSPASKRPRPGGVSPEARDPPKGE 381

Query: 112 HPAPSRTHLGHVITQCHVRRGHVPGALARRRARTKGPMGKIWGWG 156
           +P  S    G   T     RG  P AL   R + KG  GK  G G
Sbjct: 382 NPLCSSEAAGE--TGPTQVRG--PDALGGGRLQGKGREGKAPGEG 422



 Score = 29.6 bits (65), Expect = 1.2
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 9/55 (16%)

Query: 71  GSP-AAVAPAPGAARPGAAAPRRS------RLRRNSTSP--ARPLRPPSSHPAPS 116
           GSP A + PA G+  P A APR++      RLRR S  P    P    S  PAP+
Sbjct: 893 GSPRAGLPPALGSRGPAAPAPRKASLLPLQRLRRRSVRPGVVVPRVRVSKAPAPT 947



 Score = 28.1 bits (61), Expect = 3.6
 Identities = 20/64 (31%), Positives = 27/64 (42%)

Query: 52  GVSGAAADSSRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSS 111
           G SG A   S     RP   S    APAP A +P AA    +   +   +    L  P++
Sbjct: 471 GFSGDAEARSGDLGARPASRSSLPSAPAPPAQQPQAARHGAAGRDQGRRAAGAQLHDPTT 530

Query: 112 HPAP 115
            P+P
Sbjct: 531 QPSP 534


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 35.4 bits (80), Expect = 0.023
 Identities = 32/114 (28%), Positives = 41/114 (35%), Gaps = 18/114 (15%)

Query: 53  VSGAAADSSRWPLPRPVPGSPAAVAPAP----------GAARPGAAAPRRSRLRRNSTSP 102
           VSG+ A ++      P  G+P A    P          G  RPG  +PRR  +      P
Sbjct: 63  VSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPP 122

Query: 103 ARPLRPP--------SSHPAPSRTHLGHVITQCHVRRGHVPGALARRRARTKGP 148
           A  LRPP        +  PA +    G         +   P ALA R     GP
Sbjct: 123 AAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGP 176



 Score = 33.5 bits (75), Expect = 0.086
 Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 55  GAAADSSRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPA 114
           GAAA     P P   P  PAA APA  AA P    P  + L R    P  P  PP++ PA
Sbjct: 245 GAAAP----PAPA-APSPPAAPAPAAPAAAPPPPPPAPATLAR---PPGHPAGPPTAAPA 296



 Score = 30.8 bits (68), Expect = 0.56
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 64  PLPRPV-PGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPARPLRPPSSHPAPSRTHLGH 122
           PLP+P  PG+     P  GAA P A A           +PA    PP   PA      GH
Sbjct: 227 PLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGH 286



 Score = 30.0 bits (66), Expect = 0.95
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 52  GVSGAAADSSRWPLPRPVPGSPAAVA--PAPGAARPGAAAPRRSRLRRNSTSPARPLRPP 109
           G +GAA      P P P  G PA V+  P PGAA    A   ++   +     A P    
Sbjct: 307 GSAGAA------PAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQT 360

Query: 110 SSHPAPSRTHLGHVI 124
            +   P+ T    VI
Sbjct: 361 LAASGPASTAASMVI 375


>gi|154146199 sal-like 3 [Homo sapiens]
          Length = 1300

 Score = 35.4 bits (80), Expect = 0.023
 Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 16/80 (20%)

Query: 53  VSGAAADSSRWPLPRPVPGSPA----AVAPAPGAARPGAAAPRR-------SRLRRNSTS 101
           +S AAA S+  P P  +PG  A    A APA   A  G AAP         SR    +++
Sbjct: 242 LSPAAAPSAPGPAPSQLPGLAALPLSAGAPAAAIAGSGPAAPAAFEGAQPLSRPESGAST 301

Query: 102 PARPLRP-----PSSHPAPS 116
           P  P  P     PS+ PAP+
Sbjct: 302 PGGPAEPSAPAAPSAAPAPA 321



 Score = 29.6 bits (65), Expect = 1.2
 Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 46   ISLHILGVSGAAADSSRWPLPR--PVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPA 103
            I + + G   A A     PLP    VP  P  V   PG A   A  PRR+  + N  S  
Sbjct: 1061 IKMEVNGHGKAMALGEGPPLPAGVQVPAGPQTVM-GPGLAPMLAPPPRRTPKQHNCQSCG 1119

Query: 104  RPLRPPSSHPAPSRTHLGHVITQCHV 129
            +     S+     RTH G     C +
Sbjct: 1120 KTFSSASALQIHERTHTGEKPFGCTI 1145



 Score = 28.9 bits (63), Expect = 2.1
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 52  GVSGAAADSSRWPLPRP-----VPGSPA--AVAPAPGAA-RPGAAAPRRSRLRRNSTSPA 103
           G +  AA     PL RP      PG PA  +   AP AA  P A AP  +     S+ P 
Sbjct: 279 GPAAPAAFEGAQPLSRPESGASTPGGPAEPSAPAAPSAAPAPAAPAPAPAPQSAASSQPQ 338

Query: 104 RPLRPPSSHP 113
               PP+  P
Sbjct: 339 SASTPPALAP 348


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,741,300
Number of Sequences: 37866
Number of extensions: 540559
Number of successful extensions: 8162
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 756
Number of HSP's that attempted gapping in prelim test: 5991
Number of HSP's gapped (non-prelim): 2612
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.