Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239742893
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens]
(61 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens] 137 2e-33
gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens] 137 2e-33
gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens] 137 2e-33
gi|22748617 defensin, beta 105A precursor [Homo sapiens] 40 4e-04
gi|83582794 beta-defensin 110 [Homo sapiens] 40 4e-04
gi|103485141 defensin, beta 105B precursor [Homo sapiens] 40 4e-04
gi|82734214 beta-defensin 111 [Homo sapiens] 39 7e-04
gi|22748611 defensin, beta 106A precursor [Homo sapiens] 32 0.084
gi|103485143 defensin, beta 106B precursor [Homo sapiens] 32 0.084
gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 31 0.19
gi|83699414 beta-defensin 130 [Homo sapiens] 31 0.19
gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 31 0.24
gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 31 0.24
gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 31 0.24
gi|82734217 beta-defensin 112 [Homo sapiens] 31 0.24
gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|50344744 beta-defensin 108B [Homo sapiens] 30 0.54
gi|82734219 beta-defensin 114 [Homo sapiens] 30 0.54
gi|103485147 defensin, beta 107B precursor [Homo sapiens] 29 0.93
gi|103485145 defensin, beta 107A precursor [Homo sapiens] 29 0.93
gi|74136827 beta-defensin 134 [Homo sapiens] 28 1.2
gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|170016023 hypothetical protein LOC100130613 [Homo sapiens] 26 6.0
gi|215982802 F-box only protein 5 isoform b [Homo sapiens] 26 7.9
gi|6912366 F-box only protein 5 isoform a [Homo sapiens] 26 7.9
gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens] 26 7.9
gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens] 26 7.9
gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens] 26 7.9
gi|23503331 defensin, beta 123 precursor [Homo sapiens] 26 7.9
>gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens]
Length = 61
Score = 137 bits (344), Expect = 2e-33
Identities = 61/61 (100%), Positives = 61/61 (100%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANCY 60
MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANCY
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANCY 60
Query: 61 M 61
M
Sbjct: 61 M 61
>gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens]
Length = 61
Score = 137 bits (344), Expect = 2e-33
Identities = 61/61 (100%), Positives = 61/61 (100%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANCY 60
MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANCY
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANCY 60
Query: 61 M 61
M
Sbjct: 61 M 61
>gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens]
Length = 61
Score = 137 bits (344), Expect = 2e-33
Identities = 61/61 (100%), Positives = 61/61 (100%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANCY 60
MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANCY
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANCY 60
Query: 61 M 61
M
Sbjct: 61 M 61
>gi|22748617 defensin, beta 105A precursor [Homo sapiens]
Length = 78
Score = 40.0 bits (92), Expect = 4e-04
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 2 KIHVFLFVLFFFLVPIATRMKCAVKDTY-----------SCFIMRGKCRHECHDFEKPIG 50
K FLF +FF LV + + + + + SC + RGKCR EC + EKP G
Sbjct: 6 KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65
Query: 51 FCTKLNANC 59
C +LN C
Sbjct: 66 NC-RLNFLC 73
>gi|83582794 beta-defensin 110 [Homo sapiens]
Length = 62
Score = 40.0 bits (92), Expect = 4e-04
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYS-CFIMRGKCRHECHDFEKPIGFCTKLNANC 59
MKI +F F+L F++ + R K + C +RG C+ C D E G+C K + C
Sbjct: 1 MKIQLFFFILHFWVTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQC 60
>gi|103485141 defensin, beta 105B precursor [Homo sapiens]
Length = 78
Score = 40.0 bits (92), Expect = 4e-04
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 2 KIHVFLFVLFFFLVPIATRMKCAVKDTY-----------SCFIMRGKCRHECHDFEKPIG 50
K FLF +FF LV + + + + + SC + RGKCR EC + EKP G
Sbjct: 6 KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65
Query: 51 FCTKLNANC 59
C +LN C
Sbjct: 66 NC-RLNFLC 73
>gi|82734214 beta-defensin 111 [Homo sapiens]
Length = 67
Score = 39.3 bits (90), Expect = 7e-04
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYS----CFIMRGKCRHECHDFEKPIGFCTKLN 56
MKI +F F+L F++ + + K + C I G+C+++CH+ E I +C +
Sbjct: 1 MKIQLFFFILHFWVTILPAKKKYPEYGSLDLRRECRIGNGQCKNQCHENEIRIAYCIRPG 60
Query: 57 ANC 59
+C
Sbjct: 61 THC 63
>gi|22748611 defensin, beta 106A precursor [Homo sapiens]
Length = 65
Score = 32.3 bits (72), Expect = 0.084
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTK 54
M+ +FLF + FFL P K A D C ++G C++ C E+ I C K
Sbjct: 1 MRTFLFLFAVLFFLTPA----KNAFFDE-KCNKLKGTCKNNCGKNEELIALCQK 49
>gi|103485143 defensin, beta 106B precursor [Homo sapiens]
Length = 65
Score = 32.3 bits (72), Expect = 0.084
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTK 54
M+ +FLF + FFL P K A D C ++G C++ C E+ I C K
Sbjct: 1 MRTFLFLFAVLFFLTPA----KNAFFDE-KCNKLKGTCKNNCGKNEELIALCQK 49
>gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 79
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHE-CHDFEKPIGFCTKLNANC 59
MK+H + VL F+ I + C ++G CR + C + IG C + C
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
>gi|83699414 beta-defensin 130 [Homo sapiens]
Length = 79
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHE-CHDFEKPIGFCTKLNANC 59
MK+H + VL F+ I + C ++G CR + C + IG C + C
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
>gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 78
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHE-CHDFEKPIGFCTK 54
MK+H + VL F+ I + C ++G CR + C + IG C +
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNE 55
>gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 78
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHE-CHDFEKPIGFCTK 54
MK+H + VL F+ I + C ++G CR + C + IG C +
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNE 55
>gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 78
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHE-CHDFEKPIGFCTK 54
MK+H + VL F+ I + C ++G CR + C + IG C +
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNE 55
>gi|82734217 beta-defensin 112 [Homo sapiens]
Length = 113
Score = 30.8 bits (68), Expect = 0.24
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 30 SCFIMRGKCRHECHDFEKPIGFCTKLNANC 59
SC + G+C+++C D E I +C + +C
Sbjct: 53 SCTAIGGRCKNQCDDSEFRISYCARPTTHC 82
>gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]
Length = 73
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANC 59
M+I V LF +FFF+ + + K C G CR C + E +G C C
Sbjct: 1 MRIAVLLFAIFFFMSQV---LPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCC 56
>gi|50344744 beta-defensin 108B [Homo sapiens]
Length = 73
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANC 59
M+I V LF +FFF+ + + K C G CR C + E +G C C
Sbjct: 1 MRIAVLLFAIFFFMSQV---LPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCC 56
>gi|82734219 beta-defensin 114 [Homo sapiens]
Length = 69
Score = 29.6 bits (65), Expect = 0.54
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 3 IHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCT 53
+ +F ++ F V C + + C G+C+ +C + EK I C+
Sbjct: 1 MRIFYYLHFLCYVTFILPATCTLVNADRCTKRYGRCKRDCLESEKQIDICS 51
>gi|103485147 defensin, beta 107B precursor [Homo sapiens]
Length = 70
Score = 28.9 bits (63), Expect = 0.93
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFC 52
MKI VF+ L I + + A+ M G C EC FE IG C
Sbjct: 5 MKIFVFILAALILLAQIF-QARTAIHRALISKRMEGHCEAECLTFEVKIGGC 55
>gi|103485145 defensin, beta 107A precursor [Homo sapiens]
Length = 70
Score = 28.9 bits (63), Expect = 0.93
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFC 52
MKI VF+ L I + + A+ M G C EC FE IG C
Sbjct: 5 MKIFVFILAALILLAQIF-QARTAIHRALISKRMEGHCEAECLTFEVKIGGC 55
>gi|74136827 beta-defensin 134 [Homo sapiens]
Length = 66
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFC 52
MK + +FV F P+ + + + G CR EC++ E + +C
Sbjct: 1 MKPLLVVFVFLFLWDPVLAGINSLSSEMHKKCYKNGICRLECYESEMLVAYC 52
>gi|239753808 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANC 59
++I V LF +FFF+ + + K C G CR C + E +G C C
Sbjct: 11 VRIAVLLFAIFFFMSQV---LPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCC 66
>gi|239748372 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANC 59
++I V LF +FFF+ + + K C G CR C + E +G C C
Sbjct: 11 VRIAVLLFAIFFFMSQV---LPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCC 66
>gi|170016023 hypothetical protein LOC100130613 [Homo sapiens]
Length = 298
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 16 PIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPI 49
P TR+ C K + F +RG C H H++ +PI
Sbjct: 197 PGNTRIACRGKLAHVSFPLRGPC-HPMHNWPRPI 229
>gi|215982802 F-box only protein 5 isoform b [Homo sapiens]
Length = 401
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 21 MKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNAN 58
++C Y C++ R C+ E F+ +CTK N
Sbjct: 333 IRCNSPAKYDCYLQRATCKREGCGFD----YCTKCLCN 366
>gi|6912366 F-box only protein 5 isoform a [Homo sapiens]
Length = 447
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 21 MKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNAN 58
++C Y C++ R C+ E F+ +CTK N
Sbjct: 379 IRCNSPAKYDCYLQRATCKREGCGFD----YCTKCLCN 412
>gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 17 IATRMKCAVKDTYSCFIMRGKCRHECHDFEK 47
I T + + SC+I++G CR C E+
Sbjct: 4 ICTDLSSVCRSQKSCWIIKGHCRKNCKPGEQ 34
>gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 17 IATRMKCAVKDTYSCFIMRGKCRHECHDFEK 47
I T + + SC+I++G CR C E+
Sbjct: 4 ICTDLSSVCRSQKSCWIIKGHCRKNCKPGEQ 34
>gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 17 IATRMKCAVKDTYSCFIMRGKCRHECHDFEK 47
I T + + SC+I++G CR C E+
Sbjct: 4 ICTDLSSVCRSQKSCWIIKGHCRKNCKPGEQ 34
>gi|23503331 defensin, beta 123 precursor [Homo sapiens]
Length = 67
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 28 TYSCFIMRGKCRHECHDFEKPIGFCTKLNANC 59
T C+ + GKCR+ C E+ +C C
Sbjct: 22 TQRCWNLYGKCRYRCSKKERVYVYCINNKMCC 53
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.341 0.148 0.524
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,248,944
Number of Sequences: 37866
Number of extensions: 71426
Number of successful extensions: 284
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 30
length of query: 61
length of database: 18,247,518
effective HSP length: 34
effective length of query: 27
effective length of database: 16,960,074
effective search space: 457921998
effective search space used: 457921998
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.