Guide to the Human Genome
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Name: LOC100133267 Sequence: fasta or formatted (79aa) NCBI GI: 169172908
Description:

PREDICTED: similar to beta-defensin 130

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.3          1           1
 C cysteine            7.6          6           2
 D aspartate           3.8          3           2
 E glutamate           2.5          2           1
 F phenylalanine       1.3          1           1
 G glycine             8.9          7           1
 H histidine           1.3          1           1
 I isoleucine          8.9          7           1
 K lysine             12.7         10           2
 L leucine            12.7         10           3
 M methionine          1.3          1           1
 N asparagine          1.3          1           1
 P proline             8.9          7           1
 Q glutamine           2.5          2           1
 R arginine            3.8          3           2
 S serine              5.1          4           1
 T threonine           6.3          5           1
 V valine              6.3          5           1
 W tryptophan          2.5          2           2
 Y tyrosine            1.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to beta-defensin 130 
DEFB130               1.000   beta-defensin 130 
LOC729523             0.946   PREDICTED: similar to beta-defensin 130 
LOC729523             0.946   PREDICTED: similar to beta-defensin 130 
LOC729523             0.946   PREDICTED: similar to beta-defensin 130 
LOC100293245          0.939   PREDICTED: similar to beta-defensin 130 
LOC100290863          0.939   PREDICTED: hypothetical protein XP_002346650 
LOC100288554          0.939   PREDICTED: hypothetical protein XP_002342487 
LOC100287106          0.388   PREDICTED: hypothetical protein XP_002342470 
LOC100286963          0.374   PREDICTED: hypothetical protein XP_002342858 
LOC100287535          0.361   PREDICTED: hypothetical protein XP_002343194 
DEFB103A              0.068   defensin, beta 103A precursor 
DEFB103B              0.068   beta-defensin 103B precursor 
DEFB106A              0.048   defensin, beta 106A precursor 
DEFB106B              0.048   defensin, beta 106B precursor 
DEFB133               0.041   PREDICTED: defensin, beta 133 
DEFB133               0.041   PREDICTED: defensin, beta 133 
DEFB133               0.041   PREDICTED: beta-defensin 133 
ADAMTS2               0.020   ADAM metallopeptidase with thrombospondin type 1 mo...
DEFB117               0.014   PREDICTED: defensin, beta 117 
DEFB117               0.014   PREDICTED: defensin, beta 117 
DEFB117               0.014   PREDICTED: defensin, beta 117 
DEFB132               0.014   beta-defensin 32 precursor 
LOC100287524          0.007   PREDICTED: hypothetical protein XP_002342307 
DNAH3                 0.007   dynein, axonemal, heavy chain 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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